Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006483

Physical Location & Seq

Genomic Coordinates Reverse (-)

85259061 .. 85262890

Gene Structure 3830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCCTGTTCCCTCGCTCGGCTCGGCCATCGAGGCCAGCATTGTATGGGACGGTGTCTACTACGTTCGAATCGCACAATGTGGATACGAGTACGAACAGTTTACGCTTTCTTCCCACTCCTCCCACTCTGCATTTCATTGTTGTCCCGCAAAGTTTTGGCGCCATTGATTCCGGTTATTGGGCATAGAGCTGTGTTGGGGTTATCAGGCTATGTGATCAATAACGTTGGCTTTGTGTTTGCGGCTCTTTATTTGTACAGGCTCTCAGTTATTATTTTGAAGGACCATGAAGCAGCATTGAGGGCTTCAATTTTGTTTTGCTTCAATCCAGCTTCCATATTCTATTCATCAATATATTCGGAGACTCTGTACGCCCTATTTTCACTTGGGGGATTGTACCATCTAATGTCCGGAAAGAATGCTATTGCTTTTCTTTGGCTTGCCCTCTCTGGATTTTCAAGGTCCAATGGAATGCTTAATGCTGGTTATTTCTGTTTTCAGACTATGCATCAGGCTTACGATGCTGTTTTCTTGAGAAAGCGTGCTTTTTTGGCAATGCAGGTTCTTGTTGGTGGAGCTCTCCGTTGTATATGTATTTTTGTTCCTTTTGTTGCATTTCAAGCATACGGATACCACAATATCTGTCTCGGGCATTTTCCAAATGAACTGAGCCCCTGGTGCAAAGCAAGAGTGCCTATGCTGTATAATTATATTCAAAATCATTACTGGGGAGTAGGTTTTCTGAAATACTTCCAAGTTAAACAGTTGCCAAACTTTCTACTGGCATCGCCGATATTGTCTTTGGCACTTTGCTCAATTGTCCATTACGCGAAGTCAAATCCCGAAAACTTCTTCTCTTTAGGTTTCCATGCTCCTACTGAGGACAAAAATTCTGCTGCTGTGCTGTTTACCTTGAGTCATGGTAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans2

Protein Analysis

310

Amino Acids

34.89

Weight (kDa)

9.58

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mannosyl_trans2	PF04188	34 - 300	2e-100	Mannosyltransferase (PIG-V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11880 AT1G11880 AT1G11880
fragaria_vesca	FvH4_3g44841 FvH4_3g44841 FvH4_3g44841
malus_domestica	MD03G1008000.v1.1 MD03G1008200.v1.1 MD11G1011600.v1.1 MD12G1151800.v1.1 MD14G1141900.v1.1
prunus_persica	Prupe.6G010000_v2.0.a1
pyrus_communis	pycom03g00820 pycom03g00840 pycom03g00850 pycom03g00880 pycom11g00770
rosa_chinensis	RchiOBHm_Chr5g0081551
rosa_laevigata	RLG00000036947
rosa_multiflora	Rmu_sc0002706.1_g000001 Rmu_sc0014139.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002000
rosa_samantha	Rh5AG528600 Rh5CG576200 Rh5DG563500
rosa_wichuraiana	Rw5G049180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	58
AccII	CGCG	1 cut(s)	830
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	2 cut(s)	148, 242
AclI	AACGTT	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	889
AcyI	GRCGYC	1 cut(s)	161
AdeI	CACNNNGTG	1 cut(s)	81
AfaI	GTAC	4 cut(s)	93, 257, 371, 398
AfiI	CCNNNNNNNGG	2 cut(s)	18, 179
AgsI	TTSAA	6 cut(s)	280, 309, 325, 459, 620, 716
AjnI	CCWGG	1 cut(s)	674
AluBI	AGCT	3 cut(s)	191, 332, 578
AluI	AGCT	3 cut(s)	191, 332, 578
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	2 cut(s)	356, 650
Ama87I	CYCGRG	1 cut(s)	647
Aor13HI	TCCGGA	1 cut(s)	410
AoxI	GGCC	2 cut(s)	25, 34
ApeKI	GCWGC	2 cut(s)	293, 896
ApoI	RAATTY	1 cut(s)	889
Asp700I	GAANNNNTTC	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	283, 462
AsuII	TTCGAA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	647
AvaII	GGWCC	2 cut(s)	283, 462
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	2 cut(s)	580, 674
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	305, 883
BccI	CCATC	2 cut(s)	36, 408
BciT130I	CCWGG	1 cut(s)	676
BciVI	GTATCC	2 cut(s)	78, 623
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	356, 650
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	550
BfuI	GTATCC	2 cut(s)	78, 623
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	3 cut(s)	243, 294, 897
BlsI	GCNGC	3 cut(s)	244, 295, 898
Bme1390I	CCNGG	1 cut(s)	676
Bme18I	GGWCC	2 cut(s)	283, 462
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	283, 462
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	676
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	3 cut(s)	511, 517, 794
BmuI	ACTGGG	1 cut(s)	736
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	553
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	674
BsaWI	WCCGGW	2 cut(s)	172, 410
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 179
Bse1I	ACTGG	2 cut(s)	731, 786
Bse3DI	GCAATG	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	674
BseLI	CCNNNNNNNGG	2 cut(s)	18, 179
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	3 cut(s)	279, 659, 870
BseNI	ACTGG	2 cut(s)	731, 786
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	305, 883
Bsh1236I	CGCG	1 cut(s)	830
BshFI	GGCC	2 cut(s)	27, 36
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	580
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	173, 411
BslFI	GGGAC	2 cut(s)	63, 130
BslI	CCNNNNNNNGG	2 cut(s)	18, 179
BsmAI	GTCTC	2 cut(s)	356, 650
BsmFI	GGGAC	2 cut(s)	63, 130
BsmI	GAATGC	2 cut(s)	424, 477
BsnI	GGCC	2 cut(s)	27, 36
BsoBI	CYCGRG	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	580, 674
Bsp13I	TCCGGA	1 cut(s)	410
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	148, 242
BspANI	GGCC	2 cut(s)	27, 36
BspCNI	CTCAG	3 cut(s)	278, 660, 871
BspEI	TCCGGA	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	830
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	550
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	561
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	731, 786
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	1 cut(s)	216
BssNI	GRCGYC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	676
Bst4CI	ACNGT	3 cut(s)	54, 100, 765
BstACI	GRCGYC	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	255
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	3 cut(s)	38, 441, 543
BstDEI	CTNAG	3 cut(s)	265, 668, 879
BstFNI	CGCG	1 cut(s)	830
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	356, 650
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 302, 521, 551, 620, 678
BstNI	CCWGG	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	674
BstUI	CGCG	1 cut(s)	830
BstV1I	GCAGC	2 cut(s)	305, 883
BsuI	GTATCC	2 cut(s)	78, 623
BsuRI	GGCC	2 cut(s)	27, 36
BtgZI	GCGATG	1 cut(s)	771
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	3 cut(s)	38, 441, 543
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	283, 462
Csp6I	GTAC	4 cut(s)	92, 256, 370, 397
CviAII	CATG	3 cut(s)	287, 869, 920
CviQI	GTAC	4 cut(s)	92, 256, 370, 397
DdeI	CTNAG	3 cut(s)	265, 668, 879
DinI	GGCGCC	1 cut(s)	162
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
DraIII	CACNNNGTG	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	578
Eco24I	GRGCYC	2 cut(s)	580, 674
Eco47I	GGWCC	2 cut(s)	283, 462
Eco53kI	GAGCTC	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	674
EcoT22I	ATGCAT	1 cut(s)	510
EcoT38I	GRGCYC	2 cut(s)	580, 674
EgeI	GGCGCC	1 cut(s)	162
EheI	GGCGCC	1 cut(s)	162
FaeI	CATG	3 cut(s)	290, 872, 923
FaqI	GGGAC	2 cut(s)	63, 130
FatI	CATG	3 cut(s)	286, 868, 919
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	243, 294, 897
FriOI	GRGCYC	2 cut(s)	580, 674
Fsp4HI	GCNGC	3 cut(s)	243, 294, 897
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	3 cut(s)	243, 294, 897
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	27, 36
HapII	CCGG	2 cut(s)	173, 411
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	290, 872, 923
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	4 cut(s)	70, 169, 364, 916
HpaII	CCGG	2 cut(s)	173, 411
Hpy166II	GTNNAC	3 cut(s)	59, 103, 909
Hpy188I	TCNGA	3 cut(s)	361, 501, 744
Hpy188III	TCNNGA	4 cut(s)	411, 450, 532, 842
Hpy8I	GTNNAC	3 cut(s)	59, 103, 909
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	3 cut(s)	54, 100, 765
HpyCH4IV	ACGT	2 cut(s)	64, 225
HpyCH4V	TGCA	5 cut(s)	132, 508, 559, 614, 681
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 302, 521, 551, 620, 678
HpyF3I	CTNAG	3 cut(s)	265, 668, 879
HpySE526I	ACGT	2 cut(s)	64, 225
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	3 cut(s)	290, 872, 923
HspAI	GCGC	1 cut(s)	161
KasI	GGCGCC	1 cut(s)	160
Kpn2I	TCCGGA	1 cut(s)	410
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	575, 877
Lsp1109I	GCAGC	2 cut(s)	305, 883
LweI	GCATC	3 cut(s)	511, 517, 794
MaeII	ACGT	2 cut(s)	64, 225
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	2 cut(s)	103, 844
MfeI	CAATTG	1 cut(s)	816
MhlI	GDGCHC	2 cut(s)	580, 674
MluCI	AATT	4 cut(s)	309, 706, 816, 889
Mly113I	GGCGCC	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	358, 925
MnlI	CCTC	6 cut(s)	23, 26, 131, 294, 455, 874
Mph1103I	ATGCAT	1 cut(s)	510
MroI	TCCGGA	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	3 cut(s)	477, 759, 931
MspI	CCGG	2 cut(s)	173, 411
MspR9I	CCNGG	1 cut(s)	676
MunI	CAATTG	1 cut(s)	816
Mva1269I	GAATGC	2 cut(s)	424, 477
MvaI	CCWGG	1 cut(s)	676
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	6 cut(s)	33, 302, 521, 551, 620, 678
NarI	GGCGCC	1 cut(s)	161
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	3 cut(s)	290, 872, 923
NlaIV	GGNNCC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	510
NspV	TTCGAA	1 cut(s)	68
PctI	GAATGC	2 cut(s)	424, 477
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	2 cut(s)	70, 169
PflFI	GACNNNGTC	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	244, 295, 898
PleI	GAGTC	2 cut(s)	358, 924
PluTI	GGCGCC	1 cut(s)	164
PpsI	GAGTC	2 cut(s)	358, 924
Psp124BI	GAGCTC	1 cut(s)	580
Psp1406I	AACGTT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	674
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	283, 462
PsyI	GACNNNGTC	1 cut(s)	54
RsaI	GTAC	4 cut(s)	93, 257, 371, 398
RsaNI	GTAC	4 cut(s)	92, 256, 370, 397
SacI	GAGCTC	1 cut(s)	580
SaqAI	TTAA	3 cut(s)	477, 759, 931
SatI	GCNGC	3 cut(s)	243, 294, 897
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	2 cut(s)	283, 462
SchI	GAGTC	2 cut(s)	358, 925
ScrFI	CCNGG	1 cut(s)	676
SduI	GDGCHC	2 cut(s)	580, 674
SfaNI	GCATC	3 cut(s)	511, 517, 794
SfiI	GGCCNNNNNGGCC	1 cut(s)	33
SfoI	GGCGCC	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	2 cut(s)	283, 462
SmlI	CTYRAG	2 cut(s)	532, 913
SmoI	CTYRAG	2 cut(s)	532, 913
Sse9I	AATT	4 cut(s)	309, 706, 816, 889
SsiI	CCGC	2 cut(s)	148, 242
SspDI	GGCGCC	1 cut(s)	160
SstI	GAGCTC	1 cut(s)	580
StyD4I	CCNGG	1 cut(s)	674
TaaI	ACNGT	3 cut(s)	54, 100, 765
TaiI	ACGT	2 cut(s)	67, 228
TaqI	TCGA	2 cut(s)	31, 68
TasI	AATT	4 cut(s)	309, 706, 816, 889
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	70, 169
Tru1I	TTAA	3 cut(s)	477, 759, 931
Tru9I	TTAA	3 cut(s)	477, 759, 931
TseI	GCWGC	2 cut(s)	293, 896
TspDTI	ATGAA	4 cut(s)	126, 303, 336, 678
TspGWI	ACGGA	2 cut(s)	572, 642
Tth111I	GACNNNGTC	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	283, 462
XapI	RAATTY	1 cut(s)	889
XmiI	GTMKAC	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	749
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.