Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006483

Physical Location & Seq

Genomic Coordinates Reverse (-)

37318959 .. 37323376

Gene Structure 4418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44841.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATGAATCCGACCAAATCCCACCACGAATCCACCGTCATCAAATACGCAATCCGATCCAGACTCCTAGTCCTCTCTCTCATCATCCTATGGCGCACCCTCCTCACCCCGTACGACACCTCCGCTCCCCTCAACCCCACTTGTCTCTCACAACAACAACATCCTAACGTTGTTGCTGACGATGATCAACACGTCATCCTCGTACCTCGTCTCGCCTCGGCTATCGAGTCCAGCATTGTCTGGGACAGCGTCTACTTTGTTAGGATCGCACAATGTGGTTACGAGTACGAACAGTCCTATGCTTTCTTCCCTCTCCTCCCTATCTGCATTTCATGGTTGTCTCGCAAAGTTTTGGCGCCGTTGATTCCGGTGATTGGGCATAGAGCTGTGTTGGGGTTATCAGGCTATGTGATCAACAACGTTGGATTTGTGTTCGCGGCTCTTTATTTGTATAGGCTCTCAGTTATCATTTTGAAGGACCAGGAAGCAGCATTGAGGGCTTCAATTCTGTTTTGCTTCAATCCAGCTTCCATATTTTATTCATCAATATACTCAGAGACTTTGTTCGCCCTATTTTCACTTGGAGGATTGTACCATCTGATGTCCGGAAAGAATACTATTGCTGTTCTTTGGCTTGCCCTCTCTGGATTTTCAAGTTGGCAATGCAGGTTCTTGTTGGTGGAGCTCTCCGTTGTATATGTATTTTTGTTCCATTTGTTGCATTTCAGTCATATGGATACCACAATATCTGTCTTGGACATTTTCCAAATGAAACGAGCCCCTGGTGCAAAGCAAGAGTGCCTATGCTCTATAATTATATTCAAAATCATTACTGGGGGGTTGGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans2

Protein Analysis

284

Amino Acids

31.88

Weight (kDa)

8.44

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mannosyl_trans2	PF04188	13 - 479	4.1e-149	Mannosyltransferase (PIG-V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11880 AT1G11880 AT1G11880
fragaria_vesca	FvH4_3g44841 FvH4_3g44841 FvH4_3g44841
malus_domestica	MD03G1008000.v1.1 MD03G1008200.v1.1 MD11G1011600.v1.1 MD12G1151800.v1.1 MD14G1141900.v1.1
prunus_persica	Prupe.6G010000_v2.0.a1
pyrus_communis	pycom03g00820 pycom03g00840 pycom03g00850 pycom03g00880 pycom11g00770
rosa_chinensis	RchiOBHm_Chr5g0081551
rosa_laevigata	RLG00000036947
rosa_multiflora	Rmu_sc0002706.1_g000001 Rmu_sc0014139.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002000
rosa_samantha	Rh5AG528600 Rh5CG576200 Rh5DG563500
rosa_wichuraiana	Rw5G049180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	657
AccB1I	GGYRCC	1 cut(s)	355
AccBSI	CCGCTC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	437
AccIII	TCCGGA	1 cut(s)	605
AciI	CCGC	2 cut(s)	123, 437
AclI	AACGTT	2 cut(s)	168, 420
AclWI	GGATC	2 cut(s)	51, 272
AcyI	GRCGYC	1 cut(s)	356
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	4 cut(s)	113, 204, 287, 593
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	475, 504, 520, 654, 823
AhdI	GACNNNNNGTC	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	480, 781
AluBI	AGCT	3 cut(s)	386, 527, 685
AluI	AGCT	3 cut(s)	386, 527, 685
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	4 cut(s)	149, 215, 345, 551
AlwI	GGATC	2 cut(s)	51, 272
Aor13HI	TCCGGA	1 cut(s)	605
ApeKI	GCWGC	1 cut(s)	488
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspLEI	GCGC	2 cut(s)	96, 358
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	97, 382
AvaII	GGWCC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	2 cut(s)	687, 781
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	1 cut(s)	603
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	2 cut(s)	482, 783
BciVI	GTATCC	1 cut(s)	730
BclI	TGATCA	2 cut(s)	184, 411
BcoDI	GTCTC	4 cut(s)	149, 215, 345, 551
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	657
BfuI	GTATCC	1 cut(s)	730
BisI	GCNGC	2 cut(s)	438, 489
BlsI	GCNGC	2 cut(s)	439, 490
Bme1390I	CCNGG	2 cut(s)	482, 783
Bme18I	GGWCC	1 cut(s)	478
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	2 cut(s)	482, 783
BmrI	ACTGGG	1 cut(s)	843
BmuI	ACTGGG	1 cut(s)	843
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	216, 781
BsaWI	WCCGGW	2 cut(s)	367, 605
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 109, 134, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	838
Bse3DI	GCAATG	1 cut(s)	668
BseAI	TCCGGA	1 cut(s)	605
BseBI	CCWGG	2 cut(s)	482, 783
BseDI	CCNNGG	2 cut(s)	216, 781
BseGI	GGATG	3 cut(s)	84, 160, 195
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	2 cut(s)	474, 567
BseNI	ACTGG	1 cut(s)	838
BseRI	GAGGAG	2 cut(s)	92, 305
BseXI	GCAGC	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	437
BshNI	GGYRCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	687
BsiSI	CCGG	2 cut(s)	368, 606
BsiWI	CGTACG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	4 cut(s)	149, 215, 345, 551
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	687, 781
Bsp13I	TCCGGA	1 cut(s)	605
Bsp143I	GATC	4 cut(s)	56, 184, 264, 411
BspACI	CCGC	2 cut(s)	123, 437
BspCNI	CTCAG	2 cut(s)	473, 566
BspEI	TCCGGA	1 cut(s)	605
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	51, 272
BspT107I	GGYRCC	1 cut(s)	355
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	2 cut(s)	216, 781
BssMI	GATC	4 cut(s)	56, 184, 264, 411
BssNI	GRCGYC	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	482, 783
Bst4CI	ACNGT	2 cut(s)	37, 294
BstACI	GRCGYC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	2 cut(s)	460, 553
BstF5I	GGATG	3 cut(s)	84, 160, 195
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	2 cut(s)	96, 358
BstKTI	GATC	4 cut(s)	59, 187, 267, 414
BstMAI	GTCTC	4 cut(s)	149, 215, 345, 551
BstMBI	GATC	4 cut(s)	56, 184, 264, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 785
BstNI	CCWGG	2 cut(s)	482, 783
BstSCI	CCNGG	2 cut(s)	480, 781
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	730
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	84, 160, 195
BveI	ACCTGC	1 cut(s)	657
Cac8I	GCNNGC	1 cut(s)	636
CfoI	GCGC	2 cut(s)	96, 358
Cfr13I	GGNCC	1 cut(s)	478
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	4 cut(s)	112, 203, 286, 592
CviAII	CATG	1 cut(s)	333
CviQI	GTAC	4 cut(s)	112, 203, 286, 592
DdeI	CTNAG	2 cut(s)	460, 553
DinI	GGCGCC	1 cut(s)	357
DpnI	GATC	4 cut(s)	58, 186, 266, 413
DpnII	GATC	4 cut(s)	56, 184, 264, 411
DraIII	CACNNNGTG	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	685
Eco24I	GRGCYC	2 cut(s)	687, 781
Eco47I	GGWCC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	685
EcoICRI	GAGCTC	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	480, 781
EcoT38I	GRGCYC	2 cut(s)	687, 781
EgeI	GGCGCC	1 cut(s)	357
EheI	GGCGCC	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	1 cut(s)	336
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	1 cut(s)	332
FauNDI	CATATG	1 cut(s)	732
FbaI	TGATCA	2 cut(s)	184, 411
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	438, 489
FokI	GGATG	3 cut(s)	71, 147, 182
FriOI	GRGCYC	2 cut(s)	687, 781
Fsp4HI	GCNGC	2 cut(s)	438, 489
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	2 cut(s)	95, 357
GluI	GCNGC	2 cut(s)	438, 489
HaeII	RGCGCY	1 cut(s)	359
HapII	CCGG	2 cut(s)	368, 606
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	2 cut(s)	96, 358
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	1 cut(s)	336
Hin6I	GCGC	2 cut(s)	94, 356
HinP1I	GCGC	2 cut(s)	94, 356
HinfI	GANTC	5 cut(s)	7, 29, 63, 227, 364
HpaII	CCGG	2 cut(s)	368, 606
HphI	GGTGA	2 cut(s)	97, 382
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	5 cut(s)	12, 56, 556, 600, 851
Hpy188III	TCNNGA	3 cut(s)	60, 606, 645
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	37, 294
HpyCH4IV	ACGT	3 cut(s)	168, 192, 420
HpyCH4V	TGCA	4 cut(s)	327, 666, 721, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 785
HpyF3I	CTNAG	2 cut(s)	460, 553
HpySE526I	ACGT	3 cut(s)	168, 192, 420
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	1 cut(s)	336
HspAI	GCGC	2 cut(s)	94, 356
KasI	GGCGCC	1 cut(s)	355
Kpn2I	TCCGGA	1 cut(s)	605
Ksp22I	TGATCA	2 cut(s)	184, 411
Kzo9I	GATC	4 cut(s)	56, 184, 264, 411
LmnI	GCTCC	2 cut(s)	130, 682
Lsp1109I	GCAGC	1 cut(s)	500
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	3 cut(s)	168, 192, 420
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	4 cut(s)	58, 186, 266, 413
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	4 cut(s)	56, 184, 264, 411
MboII	GAAGA	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	687, 781
MluCI	AATT	2 cut(s)	504, 813
Mly113I	GGCGCC	1 cut(s)	356
MlyI	GAGTC	2 cut(s)	57, 236
MmeI	TCCRAC	2 cut(s)	35, 403
MroI	TCCGGA	1 cut(s)	605
MspI	CCGG	2 cut(s)	368, 606
MspR9I	CCNGG	2 cut(s)	482, 783
MvaI	CCWGG	2 cut(s)	482, 783
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	497, 785
NarI	GGCGCC	1 cut(s)	356
NdeI	CATATG	1 cut(s)	732
NdeII	GATC	4 cut(s)	56, 184, 264, 411
NlaIII	CATG	1 cut(s)	336
NlaIV	GGNNCC	1 cut(s)	357
NmeAIII	GCCGAG	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 198
PfeI	GAWTC	3 cut(s)	7, 29, 364
Pfl23II	CGTACG	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	439, 490
PleI	GAGTC	2 cut(s)	57, 235
PluTI	GGCGCC	1 cut(s)	359
PpsI	GAGTC	2 cut(s)	57, 235
Psp124BI	GAGCTC	1 cut(s)	687
Psp1406I	AACGTT	2 cut(s)	168, 420
Psp6I	CCWGG	2 cut(s)	480, 781
PspGI	CCWGG	2 cut(s)	480, 781
PspLI	CGTACG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	478
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	4 cut(s)	113, 204, 287, 593
RsaNI	GTAC	4 cut(s)	112, 203, 286, 592
SacI	GAGCTC	1 cut(s)	687
SatI	GCNGC	2 cut(s)	438, 489
Sau3AI	GATC	4 cut(s)	56, 184, 264, 411
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	57, 236
ScrFI	CCNGG	2 cut(s)	482, 783
SduI	GDGCHC	2 cut(s)	687, 781
SetI	ASST	9 cut(s)	122, 171, 195, 208, 388, 423, 529, 671, 687
SfoI	GGCGCC	1 cut(s)	357
SinI	GGWCC	1 cut(s)	478
Sse9I	AATT	2 cut(s)	504, 813
SsiI	CCGC	2 cut(s)	123, 437
SspDI	GGCGCC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	480, 781
TaaI	ACNGT	2 cut(s)	37, 294
TaiI	ACGT	3 cut(s)	171, 195, 423
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	504, 813
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	3 cut(s)	7, 29, 364
TseI	GCWGC	1 cut(s)	488
TspDTI	ATGAA	4 cut(s)	20, 321, 531, 785
TspGWI	ACGGA	1 cut(s)	679
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.