Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006483

Physical Location & Seq

Genomic Coordinates Forward (+)

557224 .. 558910

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTTTACCTTGATGCCAGGGGAGTAGGTTTCTTGAGATACTTCCAAGTTAAACGGTTGCCAAACTTTCTACTGGCATCCCCAATGCTGTCTCTGGCATTTTGCTCAATTGTCCATTATGCGAACTCAAAGCCTGAAACTTTCTTCTCTTTGGGTTTCCGTGCTCCTCCTGAGGATAAAGATTCTGCTGCTGTGCTCTTTTCTCTAGCGGAATACTCCTCCAGGAGTCTGGAAAATCACAATCTCAAAGCAAGGAACCAAGTGAACAAAGATGGTCCTGCTTTTCTCTCAGAAGAACGTAAATTATCAGCAAAGCGAGGATACTTGTCTGTTGCTGTGCTTCCATGTATTCTACATTTGGGATTTATGGCAGCCACGGCGTTTTTTGTCATGCATGTGCAGGCTGAAATAAAACCATCTGATGGGAGTGAAATACAGGGTGAATATGAAAACTTATGCGTTCATATATCGGCTGACACATTTGAGAAAGTAGTTGCAGCGGTTGCTATAATTGAACTGCTAGTCACCTCTGTATCAGAAATCTGGCAACATCAACTTCCATATAGGGAAATCTGGCAGTATCATTTCTTGACGGGCCCATCGTCTGCTCCCGTGAATATGCCTGGCTTCAATCCGCTGAATTCTTCGAGACCAATTCTCAACAATCCATCCCATCTGTCAACATCACCTTTCAATCCCACAGACCTGCCTTCATCATTTGGGCTTCCACGATCTCTTGTTTCCCCTAGACAACATCTCTTGTTTCCCCTATATAAAACCCACCAAGACCACAAATTTTGCCGCATACATATCTGGCTCCCCAGCCTGAATCAGTTCAAAATAATGTTTCAGTTCCACTCGCATTCATGGGAAACCGACCCCCACAAATTTTGCGCCTTCATTTCTGCAATATGTGTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans2

Protein Analysis

308

Amino Acids

34.77

Weight (kDa)

8.19

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11880 AT1G11880 AT1G11880
fragaria_vesca	FvH4_3g44841 FvH4_3g44841 FvH4_3g44841
malus_domestica	MD03G1008000.v1.1 MD03G1008200.v1.1 MD11G1011600.v1.1 MD12G1151800.v1.1 MD14G1141900.v1.1
prunus_persica	Prupe.6G010000_v2.0.a1
pyrus_communis	pycom03g00820 pycom03g00840 pycom03g00850 pycom03g00880 pycom11g00770
rosa_chinensis	RchiOBHm_Chr5g0081551
rosa_laevigata	RLG00000036947
rosa_multiflora	Rmu_sc0002706.1_g000001 Rmu_sc0014139.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002000
rosa_samantha	Rh5AG528600 Rh5CG576200 Rh5DG563500
rosa_wichuraiana	Rw5G049180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	714
AccB7I	CCANNNNNTGG	1 cut(s)	422
AciI	CCGC	4 cut(s)	209, 500, 635, 802
AcsI	RAATTY	3 cut(s)	640, 794, 887
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	515, 631, 694, 838
AjnI	CCWGG	3 cut(s)	17, 221, 622
Alw21I	GWGCWC	2 cut(s)	166, 198
Alw26I	GTCTC	2 cut(s)	96, 643
AoxI	GGCC	1 cut(s)	595
ApaI	GGGCCC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	188, 371, 497
ApoI	RAATTY	3 cut(s)	640, 794, 887
Asp700I	GAANNNNTTC	1 cut(s)	833
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	3 cut(s)	275, 595, 596
AsuHPI	GGTGA	3 cut(s)	452, 517, 678
AvaII	GGWCC	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	516, 549
BanII	GRGCYC	1 cut(s)	599
Bbv12I	GWGCWC	2 cut(s)	166, 198
BbvI	GCAGC	3 cut(s)	175, 383, 509
BccI	CCATC	6 cut(s)	266, 416, 424, 607, 676, 681
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	3 cut(s)	19, 223, 624
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	96, 643
BfaI	CTAG	3 cut(s)	206, 521, 747
BfuAI	ACCTGC	1 cut(s)	714
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	4 cut(s)	189, 372, 498, 802
BlsI	GCNGC	4 cut(s)	190, 373, 499, 803
Bme1390I	CCNGG	3 cut(s)	19, 223, 624
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	275, 595, 596
BmiI	GGNNCC	3 cut(s)	257, 597, 818
BmrFI	CCNGG	3 cut(s)	19, 223, 624
BmsI	GCATC	2 cut(s)	4, 86
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	643
BsaJI	CCNNGG	2 cut(s)	18, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	78
Bse21I	CCTNAGG	1 cut(s)	171
BseBI	CCWGG	3 cut(s)	19, 223, 624
BseDI	CCNNGG	2 cut(s)	18, 375
BseGI	GGATG	2 cut(s)	77, 668
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	162, 303
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	2 cut(s)	156, 208
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	175, 383, 509
BseYI	CCCAGC	1 cut(s)	821
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	1 cut(s)	597
BsiHKAI	GWGCWC	2 cut(s)	166, 198
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	96, 643
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	1 cut(s)	597
Bso31I	GGTCTC	1 cut(s)	643
Bsp120I	GGGCCC	1 cut(s)	595
Bsp1286I	GDGCHC	3 cut(s)	166, 198, 599
Bsp143I	GATC	1 cut(s)	731
BspACI	CCGC	4 cut(s)	209, 500, 635, 802
BspANI	GGCC	1 cut(s)	597
BspCNI	CTCAG	2 cut(s)	163, 302
BspLI	GGNNCC	3 cut(s)	257, 597, 818
BspMI	ACCTGC	1 cut(s)	714
BspTNI	GGTCTC	1 cut(s)	643
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	18, 375
BssMI	GATC	1 cut(s)	731
Bst2UI	CCWGG	3 cut(s)	19, 223, 624
Bst4CI	ACNGT	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	171, 289
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	77, 668
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	1 cut(s)	734
BstMAI	GTCTC	2 cut(s)	96, 643
BstMBI	GATC	1 cut(s)	731
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 503
BstNI	CCWGG	3 cut(s)	19, 223, 624
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	17, 221, 622
BstSLI	GKGCMC	1 cut(s)	599
BstV1I	GCAGC	3 cut(s)	175, 383, 509
BstXI	CCANNNNNNTGG	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	597
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	77, 668
BveI	ACCTGC	1 cut(s)	714
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	896
Cfr13I	GGNCC	3 cut(s)	275, 595, 596
CspCI	CAANNNNNGTGG	4 cut(s)	779, 814, 872, 907
CviAII	CATG	4 cut(s)	345, 391, 395, 867
CviJI	RGCY	9 cut(s)	133, 374, 404, 473, 597, 627, 724, 817, 825
CviKI_1	RGCY	9 cut(s)	133, 374, 404, 473, 597, 627, 724, 817, 825
DdeI	CTNAG	2 cut(s)	171, 289
DpnI	GATC	1 cut(s)	733
DpnII	GATC	1 cut(s)	731
Eco24I	GRGCYC	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	640
EcoRII	CCWGG	3 cut(s)	17, 221, 622
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	599
FaeI	CATG	4 cut(s)	348, 394, 398, 870
FatI	CATG	4 cut(s)	344, 390, 394, 866
Fnu4HI	GCNGC	4 cut(s)	189, 372, 498, 802
FokI	GGATG	2 cut(s)	64, 655
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	4 cut(s)	189, 372, 498, 802
FspBI	CTAG	3 cut(s)	206, 521, 747
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	4 cut(s)	189, 372, 498, 802
GsaI	CCCAGC	1 cut(s)	825
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	597
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	4 cut(s)	348, 394, 398, 870
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HinfI	GANTC	3 cut(s)	182, 226, 829
HphI	GGTGA	3 cut(s)	452, 517, 678
Hpy166II	GTNNAC	3 cut(s)	7, 265, 681
Hpy188I	TCNGA	3 cut(s)	292, 421, 538
Hpy188III	TCNNGA	5 cut(s)	34, 170, 230, 589, 648
Hpy8I	GTNNAC	3 cut(s)	7, 265, 681
HpyAV	CCTTC	2 cut(s)	720, 907
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	4 cut(s)	394, 400, 497, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 503
HpyF3I	CTNAG	2 cut(s)	171, 289
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	4 cut(s)	348, 394, 398, 870
HspAI	GCGC	1 cut(s)	894
Kzo9I	GATC	1 cut(s)	731
LmnI	GCTCC	3 cut(s)	169, 613, 822
Lsp1109I	GCAGC	3 cut(s)	175, 383, 509
LweI	GCATC	2 cut(s)	4, 86
MaeI	CTAG	3 cut(s)	206, 521, 747
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	1 cut(s)	733
MboI	GATC	1 cut(s)	731
MboII	GAAGA	3 cut(s)	136, 305, 636
MfeI	CAATTG	1 cut(s)	108
MhlI	GDGCHC	3 cut(s)	166, 198, 599
MluCI	AATT	7 cut(s)	108, 302, 510, 640, 654, 794, 887
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	166, 177, 229, 311, 538
Mph1103I	ATGCAT	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	833
MseI	TTAA	2 cut(s)	51, 922
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	2 cut(s)	500, 637
MspR9I	CCNGG	3 cut(s)	19, 223, 624
MunI	CAATTG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	3 cut(s)	19, 223, 624
MwoI	GCNNNNNNNGC	2 cut(s)	377, 503
NdeII	GATC	1 cut(s)	731
NlaIII	CATG	4 cut(s)	348, 394, 398, 870
NlaIV	GGNNCC	3 cut(s)	257, 597, 818
NmuCI	GTSAC	1 cut(s)	523
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	599
PctI	GAATGC	1 cut(s)	862
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	2 cut(s)	182, 829
PflMI	CCANNNNNTGG	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	4 cut(s)	190, 373, 499, 803
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp6I	CCWGG	3 cut(s)	17, 221, 622
PspFI	CCCAGC	1 cut(s)	821
PspGI	CCWGG	3 cut(s)	17, 221, 622
PspN4I	GGNNCC	3 cut(s)	257, 597, 818
PspOMI	GGGCCC	1 cut(s)	595
PspPI	GGNCC	3 cut(s)	275, 595, 596
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	51, 922
SatI	GCNGC	4 cut(s)	189, 372, 498, 802
Sau3AI	GATC	1 cut(s)	731
Sau96I	GGNCC	3 cut(s)	275, 595, 596
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	3 cut(s)	19, 223, 624
SduI	GDGCHC	3 cut(s)	166, 198, 599
SetI	ASST	6 cut(s)	12, 31, 301, 530, 691, 708
SfaNI	GCATC	2 cut(s)	4, 86
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	7 cut(s)	108, 302, 510, 640, 654, 794, 887
SsiI	CCGC	4 cut(s)	209, 500, 635, 802
SspMI	CTAG	3 cut(s)	206, 521, 747
StyD4I	CCNGG	3 cut(s)	17, 221, 622
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	647
TasI	AATT	7 cut(s)	108, 302, 510, 640, 654, 794, 887
TauI	GCSGC	1 cut(s)	804
TfiI	GAWTC	2 cut(s)	182, 829
Tru1I	TTAA	2 cut(s)	51, 922
Tru9I	TTAA	2 cut(s)	51, 922
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	3 cut(s)	188, 371, 497
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	5 cut(s)	452, 462, 702, 855, 889
TspGWI	ACGGA	1 cut(s)	149
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	3 cut(s)	640, 794, 887
XceI	RCATGY	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	3 cut(s)	206, 521, 747
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.