Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006483

Physical Location & Seq

Genomic Coordinates Forward (+)

691410 .. 692851

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTTTACCTTCATGCCAGGGGAGTAGGTTTCTTGAGATACTTCCAAGTTAAACAGTTGCCAAACTTTCTGCTGGTGTCACCAATATTGTCTCTGGAACTTTGCTCAATCGTCCATTACGATACAGATTCTGCTGCTGTGCTATTTTCCCTAGCAGAATACTCCTCCAGAAATCAGGAAAATCGCACAAGGAAGCAAGTGAACAAAGATGGTCCTGCTTTACTCTCAGAAGAACAAAAAGTACTAGCAAAGCAAGGATACTTGTCTGTTGCTGTGCTTCCATGTATTCTACATTTGGGATTTATGGCAGCCACCACATTTTTTGTCATGCATGTGCAGGTTGCTACTCGTTTCTTATCCTTCAGCCCTCCCCTCTATTGTTTTGCATCGTATATAATGAAATCTCGTGGTACTGGTAAGAGATGGGGATATATAGTTTGGGCATACTCTGCTGCGTACATTCTTCTTGGCAGTTTGCTCTTTTCGAACTTCTATCCTTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans2

Protein Analysis

169

Amino Acids

19.05

Weight (kDa)

9.43

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11880 AT1G11880 AT1G11880
fragaria_vesca	FvH4_3g44841 FvH4_3g44841 FvH4_3g44841
malus_domestica	MD03G1008000.v1.1 MD03G1008200.v1.1 MD11G1011600.v1.1 MD12G1151800.v1.1 MD14G1141900.v1.1
prunus_persica	Prupe.6G010000_v2.0.a1
pyrus_communis	pycom03g00820 pycom03g00840 pycom03g00850 pycom03g00880 pycom11g00770
rosa_chinensis	RchiOBHm_Chr5g0081551
rosa_laevigata	RLG00000036947
rosa_multiflora	Rmu_sc0002706.1_g000001 Rmu_sc0014139.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002000
rosa_samantha	Rh5AG528600 Rh5CG576200 Rh5DG563500
rosa_wichuraiana	Rw5G049180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	346
AfaI	GTAC	3 cut(s)	243, 412, 458
AjnI	CCWGG	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	96
AlwNI	CAGNNNCTG	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	134, 308, 452
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	72
AsuII	TTCGAA	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	121, 320, 439
BccI	CCATC	2 cut(s)	203, 417
BciT130I	CCWGG	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	152, 245
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	3 cut(s)	135, 309, 453
BlsI	GCNGC	3 cut(s)	136, 310, 454
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	3 cut(s)	121, 320, 439
BsgI	GTGCAG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	328
BspT104I	TTCGAA	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	18
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBI	TTCGAA	1 cut(s)	485
BstDEI	CTNAG	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	17
BstV1I	GCAGC	3 cut(s)	121, 320, 439
BsuI	GTATCC	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	328
CaiI	CAGNNNCTG	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	3 cut(s)	242, 411, 457
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	4 cut(s)	14, 282, 328, 332
CviJI	RGCY	2 cut(s)	311, 366
CviKI_1	RGCY	2 cut(s)	311, 366
CviQI	GTAC	3 cut(s)	242, 411, 457
DdeI	CTNAG	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	4 cut(s)	17, 285, 331, 335
FatI	CATG	4 cut(s)	13, 281, 327, 331
Fnu4HI	GCNGC	3 cut(s)	135, 309, 453
Fsp4HI	GCNGC	3 cut(s)	135, 309, 453
FspBI	CTAG	2 cut(s)	152, 245
GluI	GCNGC	3 cut(s)	135, 309, 453
GsuI	CTGGAG	1 cut(s)	151
Hin1II	CATG	4 cut(s)	17, 285, 331, 335
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	7, 202
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	4 cut(s)	34, 95, 168, 176
Hpy8I	GTNNAC	2 cut(s)	7, 202
HpyAV	CCTTC	2 cut(s)	20, 370
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	331, 337, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	4 cut(s)	17, 285, 331, 335
LpnPI	CCDG	9 cut(s)	4, 31, 59, 80, 161, 181, 228, 323, 399
Lsp1109I	GCAGC	3 cut(s)	121, 320, 439
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	2 cut(s)	152, 245
MaeIII	GTNAC	1 cut(s)	78
MboII	GAAGA	2 cut(s)	242, 455
MnlI	CCTC	3 cut(s)	175, 378, 383
Mph1103I	ATGCAT	1 cut(s)	333
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	449
NlaIII	CATG	4 cut(s)	17, 285, 331, 335
NmuCI	GTSAC	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	136, 310, 454
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	212
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
PstNI	CAGNNNCTG	1 cut(s)	131
RsaI	GTAC	3 cut(s)	243, 412, 458
RsaNI	GTAC	3 cut(s)	242, 411, 457
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	3 cut(s)	135, 309, 453
Sau96I	GGNCC	1 cut(s)	212
ScaI	AGTACT	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	3 cut(s)	12, 31, 342
SfaNI	GCATC	1 cut(s)	395
SfuI	TTCGAA	1 cut(s)	485
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	2 cut(s)	152, 245
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	485
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	3 cut(s)	134, 308, 452
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	2 cut(s)	152, 245
ZrmI	AGTACT	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.