Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006483

Physical Location & Seq

Genomic Coordinates Forward (+)

849683 .. 854144

Gene Structure 4462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1011600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCGATGTTATCCCGCACAGATTTGGTACCATTGGTTCCGGTCATTGGGCAGAGACCTGTGTTAGGATTATCTGGCAATGTGATCAACAACATTGGCTTCGTGTTTGCGGCTGGTTATCTATACAGATATTCAGAGACACTGTTCGCCCTTTTTTCAGTTGGAGGATTGTATCATCTAATATCTGGAAAAGATGTTATTGCTGTTCTTTGGTTTGCCCTCTCTGGATTTTCAAGGTCCCATGGAGTGCTGAGTGCTGGTTATTTCTGTTTTCAGACTATGCATCAGACCTATGATGCTGTTTTCTCGAGGAAGTGTCCTTTTTTGGCATTGCAGGCTGTTGTTGGTGGAGCTCTGCCTTGTATATGCATTTTTGCCCCTTTTGTTGCATTTCAAGCATATGGATACAACAATATTTGTCTTGGACATCTTCCATCCAATATGAGGCCCTGGTGCAAAGCAAGAGTACCGTTGCTGTACAATTATATTCAAAGTCATTATTGGGGAGTAGGTTTCTTGAGATACTTCCAAGTTAAACGGTTGCCAAACTTTCTACTGGCATCCCCAATATTGTCTCTGACACTTTGCTCAATCGTCCATTACGCGAAGTCAAAGTCCGAAACTTTCTTCTCTTTGGGATTCCAATACTCCTCCAGAAGTCAGGAAAATCACAATCTCAAAGCAAGGAACCAAGTGAACAAAGATGGTGCTGCTCTTGTCTCAGAAGAACATAAATTATCAGCAAAGCGAGGATACTTGTCTGTTGCTGTGCTTCCATGTATTCTACATTTGGGATTTATGGCAGCCACGGCGTTTTTTGTCACGCATGTGCAGGTTGCTACTCATTTCTTATCTTTCAGCCCTGCCCTCTATTGGTTTGCCTCGTATATAATGAAATCCCTTGGCACTGGTAAAAGACGGGGATATATAGTTTGGGCATACTCTGCGGCCTACATTCTTCTAGGCAGTTTGCTCTTTTCGAACTTCTATCCTTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans2

Protein Analysis

334

Amino Acids

37.18

Weight (kDa)

9.61

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mannosyl_trans2	PF04188	44 - 333	1.5e-89	Mannosyltransferase (PIG-V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11880 AT1G11880 AT1G11880
fragaria_vesca	FvH4_3g44841 FvH4_3g44841 FvH4_3g44841
malus_domestica	MD03G1008000.v1.1 MD03G1008200.v1.1 MD11G1011600.v1.1 MD12G1151800.v1.1 MD14G1141900.v1.1
prunus_persica	Prupe.6G010000_v2.0.a1
pyrus_communis	pycom03g00820 pycom03g00840 pycom03g00850 pycom03g00880 pycom11g00770
rosa_chinensis	RchiOBHm_Chr5g0081551
rosa_laevigata	RLG00000036947
rosa_multiflora	Rmu_sc0002706.1_g000001 Rmu_sc0014139.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002000
rosa_samantha	Rh5AG528600 Rh5CG576200 Rh5DG563500
rosa_wichuraiana	Rw5G049180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	823
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	605
AciI	CCGC	3 cut(s)	16, 110, 947
AfaI	GTAC	3 cut(s)	30, 468, 479
AfiI	CCNNNNNNNGG	4 cut(s)	47, 65, 444, 873
AgsI	TTSAA	3 cut(s)	234, 395, 491
AjnI	CCWGG	1 cut(s)	449
AleI	CACNNNNGTG	1 cut(s)	827
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	4 cut(s)	49, 131, 579, 724
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	2 cut(s)	446, 948
ApeKI	GCWGC	2 cut(s)	710, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	599, 631
Asp718I	GGTACC	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	237, 447
AsuII	TTCGAA	1 cut(s)	980
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	697, 815
BccI	CCATC	2 cut(s)	442, 698
BceAI	ACGGC	1 cut(s)	825
BciT130I	CCWGG	1 cut(s)	451
BciVI	GTATCC	2 cut(s)	398, 746
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	4 cut(s)	49, 131, 579, 724
BfaI	CTAG	1 cut(s)	962
BfuAI	ACCTGC	1 cut(s)	823
BfuI	GTATCC	2 cut(s)	398, 746
BisI	GCNGC	4 cut(s)	111, 711, 804, 948
BlsI	GCNGC	4 cut(s)	112, 712, 805, 949
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	237, 447
BmiI	GGNNCC	4 cut(s)	30, 39, 239, 689
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	3 cut(s)	286, 292, 569
BpmI	CTGGAG	1 cut(s)	637
Bpu14I	TTCGAA	1 cut(s)	980
BpuEI	CTTGAG	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	4 cut(s)	241, 449, 807, 901
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 65, 444, 873
Bse1I	ACTGG	2 cut(s)	561, 913
Bse3DI	GCAATG	2 cut(s)	85, 329
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	4 cut(s)	241, 449, 807, 901
BseGI	GGATG	2 cut(s)	434, 560
BseLI	CCNNNNNNNGG	4 cut(s)	47, 65, 444, 873
BseMI	GCAATG	2 cut(s)	85, 329
BseMII	CTCAG	2 cut(s)	242, 735
BseNI	ACTGG	2 cut(s)	561, 913
BseRI	GAGGAG	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	697, 815
BsgI	GTGCAG	1 cut(s)	851
Bsh1236I	CGCG	1 cut(s)	605
BshFI	GGCC	2 cut(s)	448, 950
BshNI	GGYRCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	4 cut(s)	47, 65, 444, 873
BsmAI	GTCTC	4 cut(s)	49, 131, 579, 724
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	448, 950
Bso31I	GGTCTC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	980
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	84
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	3 cut(s)	16, 110, 947
BspANI	GGCC	2 cut(s)	448, 950
BspCNI	CTCAG	2 cut(s)	243, 734
BspFNI	CGCG	1 cut(s)	605
BspLI	GGNNCC	4 cut(s)	30, 39, 239, 689
BspMI	ACCTGC	1 cut(s)	823
BspT104I	TTCGAA	1 cut(s)	980
BspT107I	GGYRCC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	2 cut(s)	85, 329
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	561, 913
BssECI	CCNNGG	4 cut(s)	241, 449, 807, 901
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	241, 901
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	3 cut(s)	144, 471, 540
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstAUI	TGTACA	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	980
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	251, 721
BstDSI	CCRYGG	2 cut(s)	241, 807
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	434, 560
BstFNI	CGCG	1 cut(s)	605
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	4 cut(s)	49, 131, 579, 724
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 395, 809, 944
BstNI	CCWGG	1 cut(s)	451
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	1 cut(s)	449
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	2 cut(s)	697, 815
BsuI	GTATCC	2 cut(s)	398, 746
BsuRI	GGCC	2 cut(s)	448, 950
BtgI	CCRYGG	2 cut(s)	241, 807
BtsCI	GGATG	2 cut(s)	434, 560
BtsIMutI	CAGTG	2 cut(s)	140, 906
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	237, 447
Csp6I	GTAC	3 cut(s)	29, 467, 478
CviAII	CATG	3 cut(s)	242, 777, 827
CviJI	RGCY	8 cut(s)	99, 113, 338, 353, 448, 806, 861, 950
CviKI_1	RGCY	8 cut(s)	99, 113, 338, 353, 448, 806, 861, 950
CviQI	GTAC	3 cut(s)	29, 467, 478
DdeI	CTNAG	2 cut(s)	251, 721
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	241, 901
Eco24I	GRGCYC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	353
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoO109I	RGGNCCY	2 cut(s)	237, 447
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	241, 901
EcoT22I	ATGCAT	2 cut(s)	285, 371
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	241, 901
FaeI	CATG	3 cut(s)	245, 780, 830
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	3 cut(s)	241, 776, 826
FauI	CCCGC	1 cut(s)	23
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	111, 711, 804, 948
FokI	GGATG	2 cut(s)	421, 547
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	4 cut(s)	111, 711, 804, 948
FspBI	CTAG	1 cut(s)	962
GluI	GCNGC	4 cut(s)	111, 711, 804, 948
GsuI	CTGGAG	1 cut(s)	637
HaeIII	GGCC	2 cut(s)	448, 950
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	3 cut(s)	245, 780, 830
HinfI	GANTC	1 cut(s)	639
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	6 cut(s)	136, 276, 288, 579, 619, 724
Hpy188III	TCNNGA	6 cut(s)	186, 225, 307, 517, 654, 662
Hpy8I	GTNNAC	1 cut(s)	697
HpyCH4III	ACNGT	3 cut(s)	144, 471, 540
HpyCH4V	TGCA	6 cut(s)	283, 334, 369, 389, 456, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 395, 809, 944
HpyF3I	CTNAG	2 cut(s)	251, 721
Hsp92II	CATG	3 cut(s)	245, 780, 830
KpnI	GGTACC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	2 cut(s)	697, 815
LweI	GCATC	3 cut(s)	286, 292, 569
MaeI	CTAG	1 cut(s)	962
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	4 cut(s)	422, 619, 737, 950
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	2 cut(s)	481, 734
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	8 cut(s)	158, 230, 303, 438, 661, 743, 878, 892
Mph1103I	ATGCAT	2 cut(s)	285, 371
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	827
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	4 cut(s)	335, 395, 809, 944
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	3 cut(s)	245, 780, 830
NlaIV	GGNNCC	4 cut(s)	30, 39, 239, 689
NmuCI	GTSAC	1 cut(s)	820
NsiI	ATGCAT	2 cut(s)	285, 371
NspI	RCATGY	1 cut(s)	830
NspV	TTCGAA	1 cut(s)	980
OliI	CACNNNNGTG	1 cut(s)	827
PaeR7I	CTCGAG	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	639
PkrI	GCNGC	4 cut(s)	112, 712, 805, 949
PpuMI	RGGWCCY	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	4 cut(s)	30, 39, 239, 689
PspPI	GGNCC	2 cut(s)	237, 447
PspPPI	RGGWCCY	1 cut(s)	237
PsrI	GAACNNNNNNTAC	2 cut(s)	21, 53
RsaI	GTAC	3 cut(s)	30, 468, 479
RsaNI	GTAC	3 cut(s)	29, 467, 478
RseI	CAYNNNNRTG	1 cut(s)	827
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	4 cut(s)	111, 711, 804, 948
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	237, 447
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	6 cut(s)	61, 239, 293, 355, 514, 837
SfaNI	GCATC	3 cut(s)	286, 292, 569
Sfr274I	CTCGAG	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	980
SinI	GGWCC	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	827
SmlI	CTYRAG	2 cut(s)	307, 517
SmoI	CTYRAG	2 cut(s)	307, 517
Sse9I	AATT	2 cut(s)	481, 734
SsiI	CCGC	3 cut(s)	16, 110, 947
SspI	AATATT	2 cut(s)	415, 570
SspMI	CTAG	1 cut(s)	962
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	449
StyI	CCWWGG	2 cut(s)	241, 901
TaaI	ACNGT	3 cut(s)	144, 471, 540
TaqI	TCGA	3 cut(s)	5, 308, 980
TasI	AATT	2 cut(s)	481, 734
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	2 cut(s)	113, 950
TfiI	GAWTC	1 cut(s)	639
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	2 cut(s)	147, 913
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	2 cut(s)	710, 803
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	1 cut(s)	908
TspRI	CASTG	2 cut(s)	147, 913
VpaK11BI	GGWCC	1 cut(s)	237
XagI	CCTNNNNNAGG	1 cut(s)	63
XceI	RCATGY	1 cut(s)	830
XhoI	CTCGAG	1 cut(s)	307
XspI	CTAG	1 cut(s)	962
Zsp2I	ATGCAT	2 cut(s)	285, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.