Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006483

Physical Location & Seq

Genomic Coordinates Reverse (-)

23432306 .. 23436160

Gene Structure 3855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1141900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCGTTCTTATCCCGCACAGTTTTGGCGCCATTGGTTCCAGTTATTGGGCAAAGAGCTGTGTTGGGATTATCCGGCTATGTCATTAATAACATTGGCTTCGTGTTTGCGGCAGTTTATTTATACAGGCTTTCAGTTGTCATTTTGAAGGACCAAGAAGCAGCAGTGAGGGCTTCAGTTTTGTTTTGCTTCAATCCAGCTTCCATATTCTATTCATCAATATATTCGGAGACATTGTTCGCCCTTTTTTCAGTTGGAGGATTGTACCATCTAATATCTGGAAAAGATGTCATTGCTGTTCTTTGGTTTGCCCTTTCAGGATTTTCAAGGTCCATTGGAGTGCTTAATGCTGATTATTTCTGTTTTCAGACTATGCATCAGGCGTATGATGCTGTTTTCTTGAGAAAGCGTCCTTTTTTGGCATTGCAGGCTGTTGTTGGTGGAGCTCTGCGCTGCATATGTATATTTGTTCCTTTTATTGCATTTGAAGCAAATGGATACAACAATCTTTGTCTTGGACATCTTCCATCCGATATGAGGCCCTGGTGCAAAGCAAGAGTCCCTTCGCTGTACAATTATATTCAGAGTCACTATTGGGGAGTAGGTTTCTTGAGATACTTCCAAGTTAAACGGTTGCCAAACTTTCTGCTGGCTTCACCAATATTGTCTCTGGCACTTTGCTCAATCGTCCATTATGCGAAGTCAAAGCCTGAAAAGTTCTTCTCTTTGGGTTTTCGTGCTCCTCCTGAGGATAAAGATTCTGGTGCTGTGCTCTTTTCTCTAGCAGAATACTCCTCCAGAAGTCAGGAAAATTGCACAAGGAAGCAAGTGAACAAAGATGGTCCTGCTTTACTCCCAGAAGAACATAAGGTATCAGCAAAGCAAGGATACTTGTCTGTTGCTGTGCTTCCATGTATTCTACATTTGGGATTTATGGCAGCCACCGCATTTTTTGTCATGCATGTGCAGGTTGCTACTCGTCTCTTATCCTTCAGCCCTCCCCTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans2

Protein Analysis

337

Amino Acids

37.36

Weight (kDa)

9.3

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mannosyl_trans2	PF04188	2 - 336	5.9e-105	Mannosyltransferase (PIG-V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11880 AT1G11880 AT1G11880
fragaria_vesca	FvH4_3g44841 FvH4_3g44841 FvH4_3g44841
malus_domestica	MD03G1008000.v1.1 MD03G1008200.v1.1 MD11G1011600.v1.1 MD12G1151800.v1.1 MD14G1141900.v1.1
prunus_persica	Prupe.6G010000_v2.0.a1
pyrus_communis	pycom03g00820 pycom03g00840 pycom03g00850 pycom03g00880 pycom11g00770
rosa_chinensis	RchiOBHm_Chr5g0081551
rosa_laevigata	RLG00000036947
rosa_multiflora	Rmu_sc0002706.1_g000001 Rmu_sc0014139.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002000
rosa_samantha	Rh5AG528600 Rh5CG576200 Rh5DG563500
rosa_wichuraiana	Rw5G049180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	958
AccB1I	GGYRCC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	3 cut(s)	16, 110, 945
AcuI	CTGAAG	2 cut(s)	159, 976
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	266, 572
AfiI	CCNNNNNNNGG	2 cut(s)	47, 537
AgsI	TTSAA	4 cut(s)	148, 193, 327, 488
AjnI	CCWGG	1 cut(s)	542
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	59, 200, 446
AluI	AGCT	3 cut(s)	59, 200, 446
Alw21I	GWGCWC	3 cut(s)	448, 742, 774
Alw26I	GTCTC	3 cut(s)	224, 672, 986
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	161, 453, 938
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	31, 453
AspS9I	GGNCC	4 cut(s)	151, 330, 540, 842
AsuHPI	GGTGA	1 cut(s)	648
AvaII	GGWCC	3 cut(s)	151, 330, 842
AxyI	CCTNAGG	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	448
Bbv12I	GWGCWC	3 cut(s)	448, 742, 774
BbvI	GCAGC	3 cut(s)	173, 440, 950
BccI	CCATC	3 cut(s)	276, 535, 833
BciT130I	CCWGG	1 cut(s)	544
BciVI	GTATCC	2 cut(s)	491, 881
BcoDI	GTCTC	3 cut(s)	224, 672, 986
BfaI	CTAG	1 cut(s)	782
BfoI	RGCGCY	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	958
BfuI	GTATCC	2 cut(s)	491, 881
BisI	GCNGC	4 cut(s)	111, 162, 454, 939
BlsI	GCNGC	4 cut(s)	112, 163, 455, 940
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	3 cut(s)	151, 330, 842
BmgT120I	GGNCC	4 cut(s)	151, 330, 540, 842
BmiI	GGNNCC	2 cut(s)	30, 39
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	2 cut(s)	379, 385
BpmI	CTGGAG	1 cut(s)	781
BpuEI	CTTGAG	2 cut(s)	421, 631
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 537
Bse1I	ACTGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	747
Bse3DI	GCAATG	2 cut(s)	291, 422
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	1 cut(s)	527
BseLI	CCNNNNNNNGG	2 cut(s)	47, 537
BseMI	GCAATG	2 cut(s)	291, 422
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	2 cut(s)	732, 784
BseXI	GCAGC	3 cut(s)	173, 440, 950
BsgI	GTGCAG	1 cut(s)	986
BshFI	GGCC	1 cut(s)	541
BshNI	GGYRCC	1 cut(s)	28
BsiHKAI	GWGCWC	3 cut(s)	448, 742, 774
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	47, 537
BsmAI	GTCTC	3 cut(s)	224, 672, 986
BsmBI	CGTCTC	1 cut(s)	986
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	541
Bsp1286I	GDGCHC	3 cut(s)	448, 742, 774
Bsp1407I	TGTACA	1 cut(s)	570
BspACI	CCGC	3 cut(s)	16, 110, 945
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	30, 39
BspMI	ACCTGC	1 cut(s)	958
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	291, 422
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	542
BssNI	GRCGYC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	2 cut(s)	22, 633
BstACI	GRCGYC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	429, 651
BstDEI	CTNAG	1 cut(s)	747
BstF5I	GGATG	1 cut(s)	527
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	31, 453
BstMAI	GTCTC	3 cut(s)	224, 672, 986
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 389, 428, 488, 944
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	965
BstSCI	CCNGG	1 cut(s)	542
BstV1I	GCAGC	3 cut(s)	173, 440, 950
Bsu36I	CCTNAGG	1 cut(s)	747
BsuI	GTATCC	2 cut(s)	491, 881
BsuRI	GGCC	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	527
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	2 cut(s)	429, 651
CfoI	GCGC	2 cut(s)	31, 453
Cfr13I	GGNCC	4 cut(s)	151, 330, 540, 842
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	265, 571
CviAII	CATG	3 cut(s)	912, 958, 962
CviQI	GTAC	2 cut(s)	265, 571
DdeI	CTNAG	1 cut(s)	747
DinI	GGCGCC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	448
Eco47I	GGWCC	3 cut(s)	151, 330, 842
Eco53kI	GAGCTC	1 cut(s)	446
Eco57I	CTGAAG	2 cut(s)	159, 976
Eco81I	CCTNAGG	1 cut(s)	747
EcoICRI	GAGCTC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	542
EcoT22I	ATGCAT	2 cut(s)	378, 963
EcoT38I	GRGCYC	1 cut(s)	448
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	986
FaeI	CATG	3 cut(s)	915, 961, 965
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	3 cut(s)	911, 957, 961
FauI	CCCGC	1 cut(s)	23
FauNDI	CATATG	1 cut(s)	458
Fnu4HI	GCNGC	4 cut(s)	111, 162, 454, 939
FokI	GGATG	1 cut(s)	514
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	4 cut(s)	111, 162, 454, 939
FspBI	CTAG	1 cut(s)	782
GlaI	GCGC	2 cut(s)	30, 452
GluI	GCNGC	4 cut(s)	111, 162, 454, 939
GsuI	CTGGAG	1 cut(s)	781
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	2 cut(s)	31, 453
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	915, 961, 965
Hin6I	GCGC	2 cut(s)	29, 451
HinP1I	GCGC	2 cut(s)	29, 451
HinfI	GANTC	3 cut(s)	558, 586, 758
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	648
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	4 cut(s)	229, 369, 532, 585
Hpy188III	TCNNGA	7 cut(s)	279, 318, 400, 610, 746, 798, 806
Hpy8I	GTNNAC	1 cut(s)	832
HpyAV	CCTTC	3 cut(s)	142, 573, 1000
HpyCH4III	ACNGT	2 cut(s)	22, 633
HpyCH4V	TGCA	8 cut(s)	376, 427, 456, 482, 549, 816, 961, 967
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 389, 428, 488, 944
HpyF3I	CTNAG	1 cut(s)	747
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	915, 961, 965
HspAI	GCGC	2 cut(s)	29, 451
KasI	GGCGCC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	443, 745
Lsp1109I	GCAGC	3 cut(s)	173, 440, 950
LweI	GCATC	2 cut(s)	379, 385
MaeI	CTAG	1 cut(s)	782
MaeIII	GTNAC	1 cut(s)	587
MboII	GAAGA	3 cut(s)	515, 712, 872
MhlI	GDGCHC	3 cut(s)	448, 742, 774
MluCI	AATT	2 cut(s)	574, 811
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	567, 595
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	7 cut(s)	162, 251, 531, 742, 753, 805, 1008
Mph1103I	ATGCAT	2 cut(s)	378, 963
MseI	TTAA	3 cut(s)	87, 345, 627
MslI	CAYNNNNRTG	2 cut(s)	338, 962
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	5 cut(s)	170, 389, 428, 488, 944
NarI	GGCGCC	1 cut(s)	29
NdeI	CATATG	1 cut(s)	458
NlaIII	CATG	3 cut(s)	915, 961, 965
NlaIV	GGNNCC	2 cut(s)	30, 39
NmuCI	GTSAC	1 cut(s)	587
NsiI	ATGCAT	2 cut(s)	378, 963
NspI	RCATGY	1 cut(s)	965
PfeI	GAWTC	1 cut(s)	758
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	4 cut(s)	112, 163, 455, 940
PleI	GAGTC	2 cut(s)	566, 594
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	2 cut(s)	566, 594
PshBI	ATTAAT	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	30, 39
PspPI	GGNCC	4 cut(s)	151, 330, 540, 842
RsaI	GTAC	2 cut(s)	266, 572
RsaNI	GTAC	2 cut(s)	265, 571
RseI	CAYNNNNRTG	2 cut(s)	338, 962
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	3 cut(s)	87, 345, 627
SatI	GCNGC	4 cut(s)	111, 162, 454, 939
Sau96I	GGNCC	4 cut(s)	151, 330, 540, 842
SchI	GAGTC	2 cut(s)	567, 595
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	3 cut(s)	448, 742, 774
SetI	ASST	7 cut(s)	61, 202, 332, 448, 607, 873, 972
SfaNI	GCATC	2 cut(s)	379, 385
SfoI	GGCGCC	1 cut(s)	30
SinI	GGWCC	3 cut(s)	151, 330, 842
SmiMI	CAYNNNNRTG	2 cut(s)	338, 962
SmlI	CTYRAG	2 cut(s)	400, 610
SmoI	CTYRAG	2 cut(s)	400, 610
Sse9I	AATT	2 cut(s)	574, 811
SsiI	CCGC	3 cut(s)	16, 110, 945
SspDI	GGCGCC	1 cut(s)	28
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	1 cut(s)	782
SstI	GAGCTC	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	22, 633
TasI	AATT	2 cut(s)	574, 811
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	758
Tru1I	TTAA	3 cut(s)	87, 345, 627
Tru9I	TTAA	3 cut(s)	87, 345, 627
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	3 cut(s)	161, 453, 938
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	3 cut(s)	151, 330, 842
VspI	ATTAAT	1 cut(s)	87
XceI	RCATGY	1 cut(s)	965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	1 cut(s)	782
Zsp2I	ATGCAT	2 cut(s)	378, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.