AT1G11990

fucose metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002069
Physical Location & Seq
Reverse (-)
4046079 .. 4049140
3062 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11990.2

Sequence Viewer

Length: 1773 bp
ATGGGACAAGAAAGACCTAACGACGAAGAGAGACCCGAGTCACGTGATCTTGGGGTCTACGGATGTTCACCGCCTCATTCGCCGCGTCTCGGTCCGACCAGGTTCTACGTCTTTGCTGGAGACCCGAATCCAAAACAAACGATAAAGCGATGCAAGAGGAAGAGAATCCAAGCTTGTAACGATCAAAGAACGGCTAAAACAGCTATTGGCGTTATGGCGATTTTGGGTTTCTTTTGCCTCGTTAATTGGTTCATGCTCTCTCGCCTTCACGAAGGTCGGGTCTGGCTTCGAAGAGGACTCTCTGAGAACCCAAAACATGTTTCTGCACAGAATGAAGAGCGTAAAAAGTTTGAAAAACAGAAGATGAAATATAATGGAACATATGGTAGAATGTTGAGTTTGGCTACTGATGCTTTGGCAGAGGGAATGCGTGATAACCGTTATTGTAATGGTTTTGATTTTGAGCAGAACAAACTTGAGACCAAAGACTTATGGCAGGAGCCGAAGGAACAAGCTTCGGCGTGGAAGCCTTGTGCGGATCAACGTTCTTTGACTCCTGACGATGGCAAAAATGGATATATTATGGTAACTGCAAACGGAGGGATTAATCAGCAAAGAGTTGCTGTATGTAACATTGTTGTTGTAGCTCGATTGCTCAATGCGGCTCTCGTCATTCCCAAATTCATGTTAAGTGACGTTTGGACAGATGCAAGTCAGTTTGGAGATATCTACCAAGAGGAACATTTTATGGAGTACTTGTCGCCCGATATTCGGATAGTAAAGGAGCTACCAAAAGAGCTTCAATCTCTTAATCTTGAAGAAATCGGTAGCGTCGTGACAGATATAGAAGTGATGAAAGAAGCCAAACCAGACTTTTATATGACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTTGTCGGATTCGGAAACCGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGAGGCTTCGGTGCAGATGTAACTTTCATGCGCTAAACTTTGTCCCGAGGATACAAGAAACTGCGGCATTGCTCGTGAAGAGATTACGGGGCAGTGGATCTTACTACCTTGCTCTCCATTTACGGTTTGAAATCGACATGGTGGCTCATTCTCTATGTTACTTCGGAGGAGGTGAAACAGAACAGAAAGAGTTGGATTCTTACCGCCAAAAACACTTTCCATCTCTTTCAACTTTAACCAGAAAAAAAAAATTCCGATCTGCGGATGTTTTGAGGACAGAAGGACTTTGTCCACTAACACCCGAAGAAGCCGTGCTTATGCTCGCGGCTCTTGGCTTCAACCGCGAAACCCGAGTTTTCGTAGCTGGTGCAAACATATATGGAGGATCAAAACGTTTAGCCGTGTTAACTAGCTTATACCCGAATCTAGTCACCAAAGAAAAGTTACTAACAGAATCCGAACTACAACCATTCAAAAACTTTTCATCTCAGCTAGCGGCATTAGATTTCATCGCTTGTGCTGCAGCAGACGCTTTTGCGATGACGGATTCAGGGAGTCAGTTATCATCTCTTGTATCGGGTTATCGGATTTATTACGGAGGAGGGAAATTGCCGACGATAAGACCGAACAAACGGAGACTTTCGGACATATTGTTGAAGAACAGTACGATTGAGTGGAACGTGTTTGAGAAAAGAGTAAGAAAAGCGATTAGACAGACGAAACATGTATTCGCTAGACCTAATGGACGCAGCGTTTACCGTTACCCAAGATGTAAAGAATGTATGTGTCATGCATGA

Protein Analysis

590

Amino Acids

67.31

Weight (kDa)

9.38

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 178 - 546 3.5e-95 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 57
AccII CGCG 3 cut(s) 85, 1301, 1320
AclI AACGTT 2 cut(s) 544, 1369
AclWI GGATC 4 cut(s) 546, 950, 1081, 1369
AcsI RAATTY 2 cut(s) 680, 1226
AcvI CACGTG 1 cut(s) 44
AfaI GTAC 2 cut(s) 755, 1642
AfiI CCNNNNNNNGG 4 cut(s) 89, 563, 771, 1237
AflIII ACRYGT 3 cut(s) 316, 1656, 1699
AgsI TTSAA 8 cut(s) 353, 803, 818, 1106, 1206, 1315, 1450, 1633
AjnI CCWGG 1 cut(s) 98
AjuI GAANNNNNNNTTGG 4 cut(s) 304, 336, 1176, 1208
AluBI AGCT 9 cut(s) 173, 203, 515, 647, 787, 799, 1340, 1389, 1468
AluI AGCT 9 cut(s) 173, 203, 515, 647, 787, 799, 1340, 1389, 1468
Alw26I GTCTC 5 cut(s) 25, 92, 114, 473, 1606
AlwI GGATC 4 cut(s) 546, 950, 1081, 1369
Ama87I CYCGRG 3 cut(s) 35, 1021, 1326
ApeKI GCWGC 3 cut(s) 1496, 1499, 1725
ApoI RAATTY 2 cut(s) 680, 1226
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AseI ATTAAT 1 cut(s) 606
AspLEI GCGC 1 cut(s) 1009
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 3 cut(s) 60, 1160, 1399
AsuII TTCGAA 1 cut(s) 289
AsuNHI GCTAGC 1 cut(s) 1468
AvaI CYCGRG 3 cut(s) 35, 1021, 1326
AvaII GGWCC 1 cut(s) 92
BauI CACGAG 1 cut(s) 1049
BbrPI CACGTG 1 cut(s) 44
BbvI GCAGC 3 cut(s) 1483, 1511, 1737
BccI CCATC 2 cut(s) 557, 1204
BceAI ACGGC 3 cut(s) 207, 1271, 1361
BciT130I CCWGG 1 cut(s) 100
BciVI GTATCC 1 cut(s) 1020
BcoDI GTCTC 5 cut(s) 25, 92, 114, 473, 1606
BfaI CTAG 4 cut(s) 1386, 1403, 1469, 1710
BfmI CTRYAG 1 cut(s) 1497
BfuI GTATCC 1 cut(s) 1020
BisI GCNGC 8 cut(s) 83, 663, 1041, 1302, 1473, 1497, 1500, 1726
BlpI GCTNAGC 1 cut(s) 946
BlsI GCNGC 8 cut(s) 84, 664, 1042, 1303, 1474, 1498, 1501, 1727
BmcAI AGTACT 1 cut(s) 755
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 3 cut(s) 35, 1021, 1326
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 3 cut(s) 140, 400, 697
BmtI GCTAGC 1 cut(s) 1472
BoxI GACNNNNGTC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 946
Bpu14I TTCGAA 1 cut(s) 289
BpuEI CTTGAG 2 cut(s) 497, 890
BsaAI YACGTR 1 cut(s) 44
BsaI GGTCTC 3 cut(s) 25, 114, 473
BsaJI CCNNGG 1 cut(s) 1022
BsaXI ACNNNNNCTCC 4 cut(s) 743, 773, 876, 906
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 563, 771, 1237
Bse3DI GCAATG 1 cut(s) 1043
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 1022
BseGI GGATG 2 cut(s) 68, 1246
BseLI CCNNNNNNNGG 4 cut(s) 89, 563, 771, 1237
BseMI GCAATG 1 cut(s) 1043
BseMII CTCAG 2 cut(s) 294, 1478
BseRI GAGGAG 2 cut(s) 1158, 1590
BseXI GCAGC 3 cut(s) 1483, 1511, 1737
BsgI GTGCAG 2 cut(s) 309, 1009
Bsh1236I CGCG 3 cut(s) 85, 1301, 1320
BsiHKCI CYCGRG 3 cut(s) 35, 1021, 1326
BslFI GGGAC 2 cut(s) 18, 1004
BslI CCNNNNNNNGG 4 cut(s) 89, 563, 771, 1237
BsmAI GTCTC 5 cut(s) 25, 92, 114, 473, 1606
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 18, 1004
BsmI GAATGC 1 cut(s) 432
Bso31I GGTCTC 3 cut(s) 25, 114, 473
BsoBI CYCGRG 3 cut(s) 35, 1021, 1326
Bsp119I TTCGAA 1 cut(s) 289
Bsp143I GATC 7 cut(s) 46, 181, 538, 955, 1073, 1232, 1361
Bsp1720I GCTNAGC 1 cut(s) 946
BspCNI CTCAG 2 cut(s) 295, 1477
BspFNI CGCG 3 cut(s) 85, 1301, 1320
BspLI GGNNCC 1 cut(s) 501
BspMAI CTGCAG 1 cut(s) 1501
BspOI GCTAGC 1 cut(s) 1472
BspPI GGATC 4 cut(s) 546, 950, 1081, 1369
BspQI GCTCTTC 1 cut(s) 330
BspT104I TTCGAA 1 cut(s) 289
BspTNI GGTCTC 3 cut(s) 25, 114, 473
BsrDI GCAATG 1 cut(s) 1043
BssECI CCNNGG 1 cut(s) 1022
BssMI GATC 7 cut(s) 46, 181, 538, 955, 1073, 1232, 1361
BssSI CACGAG 1 cut(s) 1049
Bst2BI CACGAG 1 cut(s) 1049
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 5 cut(s) 440, 966, 1101, 1640, 1736
Bst6I CTCTTC 5 cut(s) 21, 155, 286, 330, 1049
BstBAI YACGTR 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 1299, 1470
BstDEI CTNAG 3 cut(s) 303, 946, 1464
BstF5I GGATG 2 cut(s) 68, 1246
BstFNI CGCG 3 cut(s) 85, 1301, 1320
BstHHI GCGC 1 cut(s) 1009
BstKTI GATC 7 cut(s) 49, 184, 541, 958, 1076, 1235, 1364
BstMAI GTCTC 5 cut(s) 25, 92, 114, 473, 1606
BstMBI GATC 7 cut(s) 46, 181, 538, 955, 1073, 1232, 1361
BstMWI GCNNNNNNNGC 6 cut(s) 79, 200, 410, 1317, 1496, 1505
BstNI CCWGG 1 cut(s) 100
BstNSI RCATGY 2 cut(s) 320, 1703
BstPAI GACNNNNGTC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 1497
BstUI CGCG 3 cut(s) 85, 1301, 1320
BstV1I GCAGC 3 cut(s) 1483, 1511, 1737
BstX2I RGATCY 1 cut(s) 1073
BstYI RGATCY 1 cut(s) 1073
BsuI GTATCC 1 cut(s) 1020
BtgZI GCGATG 3 cut(s) 163, 1471, 1529
BtsCI GGATG 2 cut(s) 68, 1246
BtsI GCAGTG 1 cut(s) 1075
BtsIMutI CAGTG 1 cut(s) 1075
Cac8I GCNNGC 2 cut(s) 1299, 1470
CfoI GCGC 1 cut(s) 1009
Cfr13I GGNCC 1 cut(s) 92
CpoI CGGWCCG 1 cut(s) 92
CseI GACGC 4 cut(s) 74, 820, 1514, 1731
CsiI ACCWGGT 1 cut(s) 98
Csp6I GTAC 2 cut(s) 754, 1641
CspI CGGWCCG 1 cut(s) 92
CviAII CATG 8 cut(s) 253, 317, 685, 1004, 1114, 1700, 1766, 1770
CviQI GTAC 2 cut(s) 754, 1641
DdeI CTNAG 3 cut(s) 303, 946, 1464
DpnI GATC 7 cut(s) 48, 183, 540, 957, 1075, 1234, 1363
DpnII GATC 7 cut(s) 46, 181, 538, 955, 1073, 1232, 1361
Eam1104I CTCTTC 5 cut(s) 21, 155, 286, 330, 1049
EarI CTCTTC 5 cut(s) 21, 155, 286, 330, 1049
Eco31I GGTCTC 3 cut(s) 25, 114, 473
Eco32I GATATC 1 cut(s) 727
Eco47I GGWCC 1 cut(s) 92
Eco72I CACGTG 1 cut(s) 44
Eco88I CYCGRG 3 cut(s) 35, 1021, 1326
EcoRII CCWGG 1 cut(s) 98
EcoRV GATATC 1 cut(s) 727
EcoT22I ATGCAT 1 cut(s) 1771
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 8 cut(s) 256, 320, 688, 1007, 1117, 1703, 1769, 1773
FalI AAGNNNNNCTT 2 cut(s) 1275, 1307
FaqI GGGAC 2 cut(s) 18, 1004
FatI CATG 8 cut(s) 252, 316, 684, 1003, 1113, 1699, 1765, 1769
FauNDI CATATG 1 cut(s) 382
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 8 cut(s) 83, 663, 1041, 1302, 1473, 1497, 1500, 1726
FokI GGATG 2 cut(s) 75, 1253
Fsp4HI GCNGC 8 cut(s) 83, 663, 1041, 1302, 1473, 1497, 1500, 1726
FspBI CTAG 4 cut(s) 1386, 1403, 1469, 1710
GlaI GCGC 1 cut(s) 1008
GluI GCNGC 8 cut(s) 83, 663, 1041, 1302, 1473, 1497, 1500, 1726
GsuI CTGGAG 1 cut(s) 138
HgaI GACGC 4 cut(s) 74, 820, 1514, 1731
HhaI GCGC 1 cut(s) 1009
Hin1II CATG 8 cut(s) 256, 320, 688, 1007, 1117, 1703, 1769, 1773
Hin6I GCGC 1 cut(s) 1007
HinP1I GCGC 1 cut(s) 1007
HincII GTYRAC 1 cut(s) 1383
HindII GTYRAC 1 cut(s) 1383
HindIII AAGCTT 2 cut(s) 171, 513
HpaI GTTAAC 1 cut(s) 1383
HphI GGTGA 3 cut(s) 60, 1160, 1399
Hpy166II GTNNAC 5 cut(s) 58, 68, 1268, 1383, 1732
Hpy188III TCNNGA 7 cut(s) 269, 557, 815, 835, 907, 1021, 1051
Hpy8I GTNNAC 5 cut(s) 58, 68, 1268, 1383, 1732
Hpy99I CGWCG 3 cut(s) 26, 836, 1594
HpyAV CCTTC 4 cut(s) 266, 275, 499, 1250
HpyCH4III ACNGT 5 cut(s) 440, 966, 1101, 1640, 1736
HpyCH4IV ACGT 6 cut(s) 43, 108, 544, 696, 1369, 1656
HpyCH4V TGCA 8 cut(s) 153, 326, 593, 710, 990, 1346, 1499, 1769
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 200, 410, 1317, 1496, 1505
HpyF3I CTNAG 3 cut(s) 303, 946, 1464
HpySE526I ACGT 6 cut(s) 43, 108, 544, 696, 1369, 1656
Hsp92II CATG 8 cut(s) 256, 320, 688, 1007, 1117, 1703, 1769, 1773
HspAI GCGC 1 cut(s) 1007
KspAI GTTAAC 1 cut(s) 1383
Kzo9I GATC 7 cut(s) 46, 181, 538, 955, 1073, 1232, 1361
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 499, 784
Lsp1109I GCAGC 3 cut(s) 1483, 1511, 1737
LweI GCATC 3 cut(s) 140, 400, 697
MabI ACCWGGT 1 cut(s) 98
MaeI CTAG 4 cut(s) 1386, 1403, 1469, 1710
MaeII ACGT 6 cut(s) 43, 108, 544, 696, 1369, 1656
MalI GATC 7 cut(s) 48, 183, 540, 957, 1075, 1234, 1363
MboI GATC 7 cut(s) 46, 181, 538, 955, 1073, 1232, 1361
MboII GAAGA 9 cut(s) 38, 172, 303, 347, 373, 830, 1066, 1292, 1645
MflI RGATCY 1 cut(s) 1073
MluCI AATT 4 cut(s) 244, 680, 1226, 1583
MlyI GAGTC 4 cut(s) 47, 291, 547, 1540
MmeI TCCRAC 3 cut(s) 119, 910, 1149
Mph1103I ATGCAT 1 cut(s) 1771
MseI TTAA 6 cut(s) 243, 606, 689, 810, 1211, 1382
MspR9I CCNGG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 432
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 3 cut(s) 85, 1301, 1320
MwoI GCNNNNNNNGC 6 cut(s) 79, 200, 410, 1317, 1496, 1505
NdeI CATATG 1 cut(s) 382
NdeII GATC 7 cut(s) 46, 181, 538, 955, 1073, 1232, 1361
NheI GCTAGC 1 cut(s) 1468
NlaIII CATG 8 cut(s) 256, 320, 688, 1007, 1117, 1703, 1769, 1773
NlaIV GGNNCC 1 cut(s) 501
NmuCI GTSAC 4 cut(s) 39, 692, 835, 1405
NsiI ATGCAT 1 cut(s) 1771
NspI RCATGY 2 cut(s) 320, 1703
NspV TTCGAA 1 cut(s) 289
PciI ACATGT 2 cut(s) 316, 1699
PciSI GCTCTTC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 2 cut(s) 831, 1598
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 7 cut(s) 127, 165, 933, 1172, 1399, 1430, 1523
PflFI GACNNNGTC 1 cut(s) 1263
PkrI GCNGC 8 cut(s) 84, 664, 1042, 1303, 1474, 1498, 1501, 1727
PleI GAGTC 4 cut(s) 46, 291, 547, 1539
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 4 cut(s) 46, 291, 547, 1539
Ppu21I YACGTR 1 cut(s) 44
PscI ACATGT 2 cut(s) 316, 1699
PshAI GACNNNNGTC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 606
Psp1406I AACGTT 2 cut(s) 544, 1369
Psp6I CCWGG 1 cut(s) 98
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 1501
PsuI RGATCY 1 cut(s) 1073
PsyI GACNNNGTC 1 cut(s) 1263
RsaI GTAC 2 cut(s) 755, 1642
RsaNI GTAC 2 cut(s) 754, 1641
Rsr2I CGGWCCG 1 cut(s) 92
RsrII CGGWCCG 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 6 cut(s) 243, 606, 689, 810, 1211, 1382
SatI GCNGC 8 cut(s) 83, 663, 1041, 1302, 1473, 1497, 1500, 1726
Sau3AI GATC 7 cut(s) 46, 181, 538, 955, 1073, 1232, 1361
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 755
SchI GAGTC 4 cut(s) 47, 291, 547, 1540
ScrFI CCNGG 1 cut(s) 100
SexAI ACCWGGT 1 cut(s) 98
SfaNI GCATC 3 cut(s) 140, 400, 697
SfcI CTRYAG 1 cut(s) 1497
SfuI TTCGAA 1 cut(s) 289
SinI GGWCC 1 cut(s) 92
SmlI CTYRAG 2 cut(s) 476, 905
SmoI CTYRAG 2 cut(s) 476, 905
Sse9I AATT 4 cut(s) 244, 680, 1226, 1583
SspMI CTAG 4 cut(s) 1386, 1403, 1469, 1710
StyD4I CCNGG 1 cut(s) 98
TaaI ACNGT 5 cut(s) 440, 966, 1101, 1640, 1736
TaiI ACGT 6 cut(s) 46, 111, 547, 699, 1372, 1659
TaqI TCGA 3 cut(s) 289, 649, 1110
TaqII GACCGA 2 cut(s) 80, 1615
TasI AATT 4 cut(s) 244, 680, 1226, 1583
TatI WGTACW 1 cut(s) 753
TauI GCSGC 5 cut(s) 85, 665, 1043, 1304, 1475
TfiI GAWTC 7 cut(s) 127, 165, 933, 1172, 1399, 1430, 1523
Tru1I TTAA 6 cut(s) 243, 606, 689, 810, 1211, 1382
Tru9I TTAA 6 cut(s) 243, 606, 689, 810, 1211, 1382
TscAI CASTG 1 cut(s) 1075
TseFI GTSAC 4 cut(s) 39, 692, 835, 1405
TseI GCWGC 3 cut(s) 1496, 1499, 1725
Tsp45I GTSAC 4 cut(s) 39, 692, 835, 1405
TspDTI ATGAA 8 cut(s) 241, 348, 380, 673, 869, 992, 1449, 1474
TspGWI ACGGA 5 cut(s) 75, 612, 1535, 1587, 1624
TspRI CASTG 1 cut(s) 1075
Tth111I GACNNNGTC 1 cut(s) 1263
VpaK11BI GGWCC 1 cut(s) 92
VspI ATTAAT 1 cut(s) 606
XapI RAATTY 2 cut(s) 680, 1226
XceI RCATGY 2 cut(s) 320, 1703
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 4 cut(s) 1386, 1403, 1469, 1710
ZrmI AGTACT 1 cut(s) 755
Zsp2I ATGCAT 1 cut(s) 1771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.