Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002069

Physical Location & Seq

Genomic Coordinates Reverse (-)

1315612 .. 1316894

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031006

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTGCAACTCCTGAAGCTGCTTAAAGTACCAACCACCAGGATGCAGAGCAAAGTTTGCAATGTTGTTGTTATTGCACGATTACTCAATGCAACCCTGGTGGTCCCCAAATTTTTGTATAGTTGTATATGGAGGGATGTAAGTCAATTCAGCGATATCTATCAGGAGGATCATTTTATTAACTACTTGAGTCCTGATATTCGGATAGTGAAGGAACTCCCTAAGGAACTACAGTCATTAAATTTGGAAGCTATTGGTAGTCTTGTGACAGATGCAGACATCCCTAAAGAGGCAAAGCCAAGTTTTTACTTGAAAAACATTACCCCTATTCTACTTACAAATGGGGTTGTACATTTTCTTGGATTTGGGAATCGATTGGCATTTGATCCAATACCATTTCAGTTGCACAGATTAAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

141

Amino Acids

16.0

Weight (kDa)

8.95

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	15 - 138	2.2e-31	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11990 AT1G11990 AT1G62330
fragaria_vesca	FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440
malus_domestica	MD05G1352000.v1.1 MD05G1352100.v1.1 MD10G1326100.v1.1
prunus_persica	Prupe.4G015600_v2.0.a1 Prupe.4G015600_v2.0.a1
pyrus_communis	pycom05g31900 pycom10g27610
rosa_chinensis	RchiOBHm_Chr5g0002251 RchiOBHm_Chr5g0002271
rosa_laevigata	RLG00000031006 RLG00000031013
rosa_multiflora	Rmu_sc0001492.1_g000007 Rmu_sc0013155.1_g000002 Rmu_sc0013155.1_g000011
rosa_roxburghii	Rroxscaffold_1G00073660 Rroxscaffold_1G00073680
rosa_rugosa	Rorug04G0394800
rosa_samantha	Rh5AG017400 Rh5BG020200 Rh5CG019000 Rh5DG018200
rosa_wichuraiana	Rw5G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	177, 380
AcsI	RAATTY	2 cut(s)	110, 241
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	30, 351
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	38, 96
AluBI	AGCT	3 cut(s)	19, 251, 417
AluI	AGCT	3 cut(s)	19, 251, 417
AlwI	GGATC	2 cut(s)	177, 380
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	110, 241
AspS9I	GGNCC	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	6
BciT130I	CCWGG	2 cut(s)	40, 98
BfmI	CTRYAG	1 cut(s)	230
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	40, 98
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	40, 98
BmsI	GCATC	2 cut(s)	33, 262
BpuEI	CTTGAG	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse21I	CCTNAGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	40, 98
BseCI	ATCGAT	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	3 cut(s)	48, 142, 279
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	89
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	169, 385
BspDI	ATCGAT	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	177, 380
BsrDI	GCAATG	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	169, 385
Bst2UI	CCWGG	2 cut(s)	40, 98
Bst4CI	ACNGT	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstAUI	TGTACA	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	3 cut(s)	48, 142, 279
BstKTI	GATC	2 cut(s)	172, 388
BstMBI	GATC	2 cut(s)	169, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	2 cut(s)	40, 98
BstSCI	CCNGG	2 cut(s)	38, 96
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	373
Bsu36I	CCTNAGG	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	48, 142, 279
Cfr13I	GGNCC	1 cut(s)	103
ClaI	ATCGAT	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	29, 350
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviJI	RGCY	4 cut(s)	19, 251, 298, 417
CviKI_1	RGCY	4 cut(s)	19, 251, 298, 417
CviQI	GTAC	2 cut(s)	29, 350
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	171, 387
DpnII	GATC	2 cut(s)	169, 385
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	38, 96
EcoRV	GATATC	1 cut(s)	157
FaiI	YATR	3 cut(s)	120, 128, 130
FaqI	GGGAC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	3 cut(s)	55, 149, 266
Fsp4HI	GCNGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	20
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	2 cut(s)	190, 370
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	3 cut(s)	13, 164, 194
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	7 cut(s)	7, 46, 60, 77, 92, 275, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	169, 385
LpnPI	CCDG	7 cut(s)	25, 26, 52, 83, 110, 149, 207
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	2 cut(s)	33, 262
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	171, 387
MboI	GATC	2 cut(s)	169, 385
MluCI	AATT	3 cut(s)	110, 146, 241
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	3 cut(s)	126, 160, 283
MseI	TTAA	4 cut(s)	24, 180, 239, 413
MslI	CAYNNNNRTG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	40, 98
MvaI	CCWGG	2 cut(s)	40, 98
MwoI	GCNNNNNNNGC	1 cut(s)	57
NdeII	GATC	2 cut(s)	169, 385
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	38, 96
PspGI	CCWGG	2 cut(s)	38, 96
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	103
RsaI	GTAC	2 cut(s)	30, 351
RsaNI	GTAC	2 cut(s)	29, 350
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	24, 180, 239, 413
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	169, 385
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	40, 98
SetI	ASST	3 cut(s)	21, 253, 419
SfaNI	GCATC	2 cut(s)	33, 262
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	110, 146, 241
StyD4I	CCNGG	2 cut(s)	38, 96
TaaI	ACNGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	373
TasI	AATT	3 cut(s)	110, 146, 241
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	4 cut(s)	24, 180, 239, 413
Tru9I	TTAA	4 cut(s)	24, 180, 239, 413
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	110, 241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.