Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002069

Physical Location & Seq

Genomic Coordinates Forward (+)

94417449 .. 94420523

Gene Structure 3075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATACAACAAATGGGTGCTTTCCTTCTTCAAAGGTTGTGTCACAGTGAAAGTCATGATGGACCACTGGATCGTTATCTAGTTGGTCCATATGCAGCACCAATCAAGAAAGAAAATGAAGGTCCTGCTAAGAAAGCTTCCAAGTACCTGGCTTTACACCTGAGGTTTGAAATTGACATGGTAGCTCATTCTTTGTGTGAATTTGGTGGAGGAGATGTGGAGCAAAAGGAGCTACCTACTCCTGCAGTACTTAGGTCAGAAGGCTTGTGTCCTTTATCGCCTGAAGAAGTTGTGCTTATGCTTGCTGCTCTTGGTTTCAAGTGTAAGACACATATATTTGTGGCAGGTTCACAGATATATGGAGGGAGATCGAGGATGATTGCTTTGACGAGCTTGTACCCTAAATTGATGACTAAAGAAAACTTGCTTACACCCGCTGAACTTGAAGCTTTGAAGAATTTTAAATCTCGGTTAGCAGCACTGGACTTCATAGGCTGCACTGCTGCCAATGCATTTGCCATGACTGATTCTGGAAGTCAATTATCATCCTTGGTAACTGGTTTTCGCATATACTATGGTGGAGGAATAACGCCAACAATACGACCAAACAAACGGAGGCTTGCCAGCATTTTTTCAAAGAACTCCGGTATTGAATGGCATGCATTTGAGCAGAGTGAGGAGGGCAGTTTGACAAACCAAACATGTTCAGCCAAGGCCCAGGGCAAGGAGTGTTTATCGGTATCCACGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

250

Amino Acids

27.21

Weight (kDa)

8.42

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	2 - 192	2.3e-36	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11990 AT1G11990 AT1G62330
fragaria_vesca	FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440
malus_domestica	MD05G1352000.v1.1 MD05G1352100.v1.1 MD10G1326100.v1.1
prunus_persica	Prupe.4G015600_v2.0.a1 Prupe.4G015600_v2.0.a1
pyrus_communis	pycom05g31900 pycom10g27610
rosa_chinensis	RchiOBHm_Chr5g0002251 RchiOBHm_Chr5g0002271
rosa_laevigata	RLG00000031006 RLG00000031013
rosa_multiflora	Rmu_sc0001492.1_g000007 Rmu_sc0013155.1_g000002 Rmu_sc0013155.1_g000011
rosa_roxburghii	Rroxscaffold_1G00073660 Rroxscaffold_1G00073680
rosa_rugosa	Rorug04G0394800
rosa_samantha	Rh5AG017400 Rh5BG020200 Rh5CG019000 Rh5DG018200
rosa_wichuraiana	Rw5G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	200, 457
AcuI	CTGAAG	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	750
AfaI	GTAC	3 cut(s)	146, 249, 398
AfiI	CCNNNNNNNGG	1 cut(s)	724
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	7 cut(s)	32, 170, 319, 446, 454, 636, 653
AjnI	CCWGG	2 cut(s)	147, 717
AluBI	AGCT	5 cut(s)	137, 185, 232, 393, 449
AluI	AGCT	5 cut(s)	137, 185, 232, 393, 449
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	714
ApeKI	GCWGC	5 cut(s)	95, 305, 476, 495, 503
ApoI	RAATTY	2 cut(s)	200, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
AspS9I	GGNCC	4 cut(s)	62, 86, 122, 715
AvaII	GGWCC	3 cut(s)	62, 86, 122
AxyI	CCTNAGG	1 cut(s)	161
BbvI	GCAGC	5 cut(s)	107, 292, 482, 488, 490
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	149, 719
BciVI	GTATCC	1 cut(s)	751
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	751
BisI	GCNGC	5 cut(s)	96, 306, 477, 496, 504
BlsI	GCNGC	5 cut(s)	97, 307, 478, 497, 505
BmcAI	AGTACT	1 cut(s)	249
Bme1390I	CCNGG	2 cut(s)	149, 719
Bme18I	GGWCC	3 cut(s)	62, 86, 122
BmgT120I	GGNCC	4 cut(s)	62, 86, 122, 715
BmrFI	CCNGG	2 cut(s)	149, 719
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	5 cut(s)	549, 711, 717, 718, 744
BsaWI	WCCGGW	1 cut(s)	644
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse1I	ACTGG	3 cut(s)	72, 486, 562
Bse21I	CCTNAGG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	149, 719
BseDI	CCNNGG	5 cut(s)	549, 711, 717, 718, 744
BseGI	GGATG	2 cut(s)	381, 545
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	3 cut(s)	72, 486, 562
BseRI	GAGGAG	2 cut(s)	225, 692
BseXI	GCAGC	5 cut(s)	107, 292, 482, 488, 490
BsgI	GTGCAG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	716
BsiSI	CCGG	1 cut(s)	645
BslI	CCNNNNNNNGG	1 cut(s)	724
BsnI	GGCC	1 cut(s)	716
Bsp143I	GATC	2 cut(s)	70, 368
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	1 cut(s)	716
BspCNI	CTCAG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	72, 486, 562
BssECI	CCNNGG	5 cut(s)	549, 711, 717, 718, 744
BssMI	GATC	2 cut(s)	70, 368
BssT1I	CCWWGG	2 cut(s)	549, 711
Bst2UI	CCWGG	2 cut(s)	149, 719
Bst4CI	ACNGT	2 cut(s)	47, 748
BstC8I	GCNNGC	4 cut(s)	303, 621, 625, 660
BstDEI	CTNAG	3 cut(s)	129, 161, 251
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	2 cut(s)	381, 545
BstKTI	GATC	2 cut(s)	73, 371
BstMBI	GATC	2 cut(s)	70, 368
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 229, 509
BstNI	CCWGG	2 cut(s)	149, 719
BstNSI	RCATGY	2 cut(s)	662, 705
BstSCI	CCNGG	2 cut(s)	147, 717
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	5 cut(s)	107, 292, 482, 488, 490
BstXI	CCANNNNNNTGG	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	716
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	2 cut(s)	381, 545
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	4 cut(s)	52, 65, 479, 498
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	4 cut(s)	303, 621, 625, 660
CciI	TCATGA	1 cut(s)	55
Cfr13I	GGNCC	4 cut(s)	62, 86, 122, 715
Csp6I	GTAC	3 cut(s)	145, 248, 397
CviAII	CATG	5 cut(s)	56, 178, 520, 659, 702
CviQI	GTAC	3 cut(s)	145, 248, 397
DdeI	CTNAG	3 cut(s)	129, 161, 251
DpnI	GATC	2 cut(s)	72, 370
DpnII	GATC	2 cut(s)	70, 368
DraI	TTTAAA	1 cut(s)	463
DraIII	CACNNNGTG	1 cut(s)	750
Eco130I	CCWWGG	2 cut(s)	549, 711
Eco47I	GGWCC	3 cut(s)	62, 86, 122
Eco57I	CTGAAG	1 cut(s)	303
Eco81I	CCTNAGG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	147, 717
EcoT14I	CCWWGG	2 cut(s)	549, 711
EcoT22I	ATGCAT	2 cut(s)	514, 664
ErhI	CCWWGG	2 cut(s)	549, 711
FaeI	CATG	5 cut(s)	59, 181, 523, 662, 705
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	5 cut(s)	55, 177, 519, 658, 701
FauI	CCCGC	1 cut(s)	442
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	5 cut(s)	96, 306, 477, 496, 504
FokI	GGATG	2 cut(s)	388, 532
Fsp4HI	GCNGC	5 cut(s)	96, 306, 477, 496, 504
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	5 cut(s)	96, 306, 477, 496, 504
HaeIII	GGCC	1 cut(s)	716
HapII	CCGG	1 cut(s)	645
Hin1II	CATG	5 cut(s)	59, 181, 523, 662, 705
HindIII	AAGCTT	2 cut(s)	135, 447
HinfI	GANTC	1 cut(s)	527
HpaII	CCGG	1 cut(s)	645
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	56, 106, 531
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	35, 113, 254
HpyCH4III	ACNGT	2 cut(s)	47, 748
HpyCH4V	TGCA	5 cut(s)	95, 245, 498, 512, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 229, 509
HpyF3I	CTNAG	3 cut(s)	129, 161, 251
Hsp92II	CATG	5 cut(s)	59, 181, 523, 662, 705
Kzo9I	GATC	2 cut(s)	70, 368
LmnI	GCTCC	2 cut(s)	220, 229
Lsp1109I	GCAGC	5 cut(s)	107, 292, 482, 488, 490
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	41, 553
MalI	GATC	2 cut(s)	72, 370
MboI	GATC	2 cut(s)	70, 368
MboII	GAAGA	3 cut(s)	20, 296, 466
MluCI	AATT	5 cut(s)	171, 200, 404, 457, 539
MnlI	CCTC	8 cut(s)	156, 203, 356, 366, 575, 609, 670, 673
Mph1103I	ATGCAT	2 cut(s)	514, 664
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	2 cut(s)	149, 719
MvaI	CCWGG	2 cut(s)	149, 719
MwoI	GCNNNNNNNGC	3 cut(s)	134, 229, 509
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	70, 368
NlaIII	CATG	5 cut(s)	59, 181, 523, 662, 705
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	2 cut(s)	514, 664
NspI	RCATGY	2 cut(s)	662, 705
PaeI	GCATGC	1 cut(s)	662
PagI	TCATGA	1 cut(s)	55
PasI	CCCWGGG	1 cut(s)	718
PciI	ACATGT	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	527
PkrI	GCNGC	5 cut(s)	97, 307, 478, 497, 505
PpuMI	RGGWCCY	1 cut(s)	122
PscI	ACATGT	1 cut(s)	701
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	147, 717
PspGI	CCWGG	2 cut(s)	147, 717
PspPI	GGNCC	4 cut(s)	62, 86, 122, 715
PspPPI	RGGWCCY	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	3 cut(s)	146, 249, 398
RsaNI	GTAC	3 cut(s)	145, 248, 397
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	5 cut(s)	96, 306, 477, 496, 504
Sau3AI	GATC	2 cut(s)	70, 368
Sau96I	GGNCC	4 cut(s)	62, 86, 122, 715
ScaI	AGTACT	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	149, 719
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	3 cut(s)	62, 86, 122
SphI	GCATGC	1 cut(s)	662
Sse9I	AATT	5 cut(s)	171, 200, 404, 457, 539
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	147, 717
StyI	CCWWGG	2 cut(s)	549, 711
TaaI	ACNGT	2 cut(s)	47, 748
TaqI	TCGA	1 cut(s)	371
TasI	AATT	5 cut(s)	171, 200, 404, 457, 539
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	4 cut(s)	52, 72, 486, 505
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	5 cut(s)	95, 305, 476, 495, 503
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	132, 478
TspGWI	ACGGA	1 cut(s)	628
TspRI	CASTG	4 cut(s)	52, 72, 486, 505
VpaK11BI	GGWCC	3 cut(s)	62, 86, 122
XapI	RAATTY	2 cut(s)	200, 457
XceI	RCATGY	2 cut(s)	662, 705
XspI	CTAG	1 cut(s)	80
ZrmI	AGTACT	1 cut(s)	249
Zsp2I	ATGCAT	2 cut(s)	514, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.