Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002069

Physical Location & Seq

Genomic Coordinates Forward (+)

31450991 .. 31451948

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGGCTCATTCTTTGTGTGAGTTTGGTGGAGCTGATGAAGAAAGAAAAGAGTTGGAAGCATATCGTGAAATCCACTTCCCCGCACCGACACTTCTTAAGAAGACTAAAACGCTGCCTACTCCTGCAGAGCTCAGGGAAGAAGGCTTCTGTCCCTTAACACCTGAAGAAGCAGTACTAATGCTTGCTGCTCTTGGTTTCAACCGGAACACACGTGTATTTGTGGCAGGTTCACAAATATATGCAGGGAGATCAAGGATGATTGCTTTGACTAGCTTGTATCTGGAATTAGTGACTAAAGAAAATTTGCTCACACAGACTGAACTCGAACCTTTCATGAATTTTTCATCACAGTTAGCAGCACTGGACTTCATAGGCTGCACTGCTGCCGATGCATTTGCCATGACCGATTCAGGAAGTCAGTTATCATCCTTGGTATCCAGTTTTCGAATATACTACGGTGGAGGAAAAATGCCAACAATACGACCAAACAAACGCAGGCTTTCAAGCATCGTTATGAAGAACTCCACTATTGAATGGCGTGTGTTCGAGCAGAGAATTCGAAAGGCAGTCAGACAAACTAAACACATCCAACCAAGGCCCAAGGCAAGGAGTATGTATAGGTATCCATGGTGTGATGAGTGTATGCGCAACATGACAATATCCTCCCGACATTTGCTTCCTAGATTTGTGCCATGCTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

236

Amino Acids

26.83

Weight (kDa)

9.4

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11990 AT1G11990 AT1G62330
fragaria_vesca	FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440
malus_domestica	MD05G1352000.v1.1 MD05G1352100.v1.1 MD10G1326100.v1.1
prunus_persica	Prupe.4G015600_v2.0.a1 Prupe.4G015600_v2.0.a1
pyrus_communis	pycom05g31900 pycom10g27610
rosa_chinensis	RchiOBHm_Chr5g0002251 RchiOBHm_Chr5g0002271
rosa_laevigata	RLG00000031006 RLG00000031013
rosa_multiflora	Rmu_sc0001492.1_g000007 Rmu_sc0013155.1_g000002 Rmu_sc0013155.1_g000011
rosa_roxburghii	Rroxscaffold_1G00073660 Rroxscaffold_1G00073680
rosa_rugosa	Rorug04G0394800
rosa_samantha	Rh5AG017400 Rh5BG020200 Rh5CG019000 Rh5DG018200
rosa_wichuraiana	Rw5G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	218
AciI	CCGC	1 cut(s)	84
AcsI	RAATTY	3 cut(s)	304, 340, 558
AcuI	CTGAAG	1 cut(s)	186
AcvI	CACGTG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	609
AflII	CTTAAG	1 cut(s)	98
AflIII	ACRYGT	2 cut(s)	212, 214
AgsI	TTSAA	3 cut(s)	202, 507, 536
AluBI	AGCT	3 cut(s)	35, 133, 276
AluI	AGCT	3 cut(s)	35, 133, 276
Alw21I	GWGCWC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	5 cut(s)	115, 188, 359, 378, 386
ApoI	RAATTY	3 cut(s)	304, 340, 558
AspLEI	GCGC	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	600
AsuII	TTCGAA	2 cut(s)	448, 562
BanII	GRGCYC	1 cut(s)	135
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbrPI	CACGTG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	5 cut(s)	102, 175, 365, 371, 373
BcgI	CGANNNNNNTGC	4 cut(s)	380, 414, 542, 576
BciVI	GTATCC	2 cut(s)	448, 636
BfaI	CTAG	2 cut(s)	273, 684
BfmI	CTRYAG	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	218
BfuI	GTATCC	2 cut(s)	448, 636
BisI	GCNGC	5 cut(s)	116, 189, 360, 379, 387
BlsI	GCNGC	5 cut(s)	117, 190, 361, 380, 388
BmcAI	AGTACT	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	600
BmsI	GCATC	2 cut(s)	382, 519
BpiI	GAAGAC	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	134
Bpu14I	TTCGAA	2 cut(s)	448, 562
BsaAI	YACGTR	1 cut(s)	215
BsaJI	CCNNGG	4 cut(s)	432, 596, 603, 629
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse1I	ACTGG	2 cut(s)	369, 441
BseDI	CCNNGG	4 cut(s)	432, 596, 603, 629
BseGI	GGATG	3 cut(s)	264, 428, 588
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	2 cut(s)	369, 441
BseXI	GCAGC	5 cut(s)	102, 175, 365, 371, 373
BsgI	GTGCAG	1 cut(s)	364
BshFI	GGCC	1 cut(s)	601
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	601
Bsp119I	TTCGAA	2 cut(s)	448, 562
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	251
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	218
BspT104I	TTCGAA	2 cut(s)	448, 562
BspTI	CTTAAG	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	369, 441
BssECI	CCNNGG	4 cut(s)	432, 596, 603, 629
BssMI	GATC	1 cut(s)	251
BssT1I	CCWWGG	4 cut(s)	432, 596, 603, 629
Bst4CI	ACNGT	2 cut(s)	354, 461
BstAFI	CTTAAG	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	215
BstBI	TTCGAA	2 cut(s)	448, 562
BstC8I	GCNNGC	2 cut(s)	186, 500
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	3 cut(s)	264, 428, 588
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	5 cut(s)	102, 175, 365, 371, 373
BstV2I	GAAGAC	1 cut(s)	110
BsuI	GTATCC	2 cut(s)	448, 636
BsuRI	GGCC	1 cut(s)	601
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	3 cut(s)	264, 428, 588
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	362, 381
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	186, 500
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	1 cut(s)	651
Cfr13I	GGNCC	1 cut(s)	600
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	5 cut(s)	337, 403, 630, 655, 696
CviJI	RGCY	8 cut(s)	8, 35, 133, 147, 276, 378, 502, 601
CviKI_1	RGCY	8 cut(s)	8, 35, 133, 147, 276, 378, 502, 601
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	4 cut(s)	432, 596, 603, 629
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	186
Eco72I	CACGTG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	558
EcoT14I	CCWWGG	4 cut(s)	432, 596, 603, 629
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	4 cut(s)	432, 596, 603, 629
FaeI	CATG	5 cut(s)	340, 406, 633, 658, 699
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	5 cut(s)	336, 402, 629, 654, 695
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	5 cut(s)	116, 189, 360, 379, 387
FokI	GGATG	3 cut(s)	271, 415, 575
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	116, 189, 360, 379, 387
FspBI	CTAG	2 cut(s)	273, 684
FspI	TGCGCA	1 cut(s)	650
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	5 cut(s)	116, 189, 360, 379, 387
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	1 cut(s)	205
HhaI	GCGC	1 cut(s)	651
Hin1II	CATG	5 cut(s)	340, 406, 633, 658, 699
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	575, 707
Hpy188III	TCNNGA	5 cut(s)	68, 284, 337, 414, 669
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	354, 461
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	4 cut(s)	128, 245, 381, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	5 cut(s)	340, 406, 633, 658, 699
HspAI	GCGC	1 cut(s)	649
Kzo9I	GATC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	5 cut(s)	102, 175, 365, 371, 373
LweI	GCATC	2 cut(s)	382, 519
MaeI	CTAG	2 cut(s)	273, 684
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	5 cut(s)	53, 115, 152, 179, 532
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	4 cut(s)	287, 304, 340, 558
MmeI	TCCRAC	2 cut(s)	36, 616
MnlI	CCTC	2 cut(s)	458, 676
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	2 cut(s)	99, 158
MslI	CAYNNNNRTG	1 cut(s)	515
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	392
NcoI	CCATGG	1 cut(s)	629
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	5 cut(s)	340, 406, 633, 658, 699
NmuCI	GTSAC	1 cut(s)	292
NsbI	TGCGCA	1 cut(s)	650
NsiI	ATGCAT	1 cut(s)	397
NspV	TTCGAA	2 cut(s)	448, 562
PagI	TCATGA	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	117, 190, 361, 380, 388
PmaCI	CACGTG	1 cut(s)	215
PmlI	CACGTG	1 cut(s)	215
Ppu21I	YACGTR	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	135
PspCI	CACGTG	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	600
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	99, 158
SatI	GCNGC	5 cut(s)	116, 189, 360, 379, 387
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	600
ScaI	AGTACT	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	8 cut(s)	37, 135, 166, 217, 232, 278, 334, 626
SfaNI	GCATC	2 cut(s)	382, 519
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	2 cut(s)	448, 562
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	287, 304, 340, 558
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	273, 684
SstI	GAGCTC	1 cut(s)	135
StyI	CCWWGG	4 cut(s)	432, 596, 603, 629
TaaI	ACNGT	2 cut(s)	354, 461
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	4 cut(s)	327, 448, 549, 562
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	4 cut(s)	287, 304, 340, 558
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	99, 158
Tru9I	TTAA	2 cut(s)	99, 158
TscAI	CASTG	2 cut(s)	369, 388
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	5 cut(s)	115, 188, 359, 378, 386
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	6 cut(s)	54, 325, 336, 353, 361, 533
TspRI	CASTG	2 cut(s)	369, 388
Vha464I	CTTAAG	1 cut(s)	98
XapI	RAATTY	3 cut(s)	304, 340, 558
XspI	CTAG	2 cut(s)	273, 684
ZrmI	AGTACT	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.