Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002069

Physical Location & Seq

Genomic Coordinates Forward (+)

28510772 .. 28511709

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCCGTAAACATAGTTCAAATTGAACCCGTCCCACCAGAAGAAGATGGACCCACCTCAGCTCAGCCCCTCGACCCCACCACCTCCTCCTCCGCCTGTCCCAGCCCCGCTTTTCTGCATTACCGGTCCGGCTCCTCCACTCCCCGGAGCCGCCCTTCATCCCCGACTAACTCGCCGGGAAACGGCCTCACTCGGTTTTCCACCTCGGAGGCGCCGCTGGATTGGGTGCCGAAGATGCAGAGGAGGACCTCCGCCAGGAAGGTAGGAGTTGAGAGGCCTTGGTATAGCAAAAAGCGAGTGAAGGGGATTGTGGGGGTGATTGGATTGTTGGTATTTTACTTCTTGATGAATTGGGTTATGCTTTTGCGGCTTCAAGATCATGGGATCCGTTCTGAATCTGGGTTTCCCGGGAATTCGTCTCTGCCGTCGGTCTCCGTCACCATTCCGGCGAAATGGAGAAAAATTGGTAAAGTAAAAAAGGCACAGAAAGGTAACTATGGAAGGATGCTGGCTTTGGCTGCTCATGCATTGGCAGAGACAGGGGCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

184

Amino Acids

19.89

Weight (kDa)

10.28

Isoelectric Point (pI)

64.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11990 AT1G11990 AT1G62330
fragaria_vesca	FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440
malus_domestica	MD05G1352000.v1.1 MD05G1352100.v1.1 MD10G1326100.v1.1
prunus_persica	Prupe.4G015600_v2.0.a1 Prupe.4G015600_v2.0.a1
pyrus_communis	pycom05g31900 pycom10g27610
rosa_chinensis	RchiOBHm_Chr5g0002251 RchiOBHm_Chr5g0002271
rosa_laevigata	RLG00000031006 RLG00000031013
rosa_multiflora	Rmu_sc0001492.1_g000007 Rmu_sc0013155.1_g000002 Rmu_sc0013155.1_g000011
rosa_roxburghii	Rroxscaffold_1G00073660 Rroxscaffold_1G00073680
rosa_rugosa	Rorug04G0394800
rosa_samantha	Rh5AG017400 Rh5BG020200 Rh5CG019000 Rh5DG018200
rosa_wichuraiana	Rw5G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	211, 226
AciI	CCGC	6 cut(s)	93, 108, 151, 215, 252, 367
AclWI	GGATC	2 cut(s)	379, 392
AcsI	RAATTY	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	144, 182, 255
AgeI	ACCGGT	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	20, 26, 374
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	3 cut(s)	423, 436, 530
AlwI	GGATC	2 cut(s)	379, 392
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	2 cut(s)	184, 275
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	412
AsiGI	ACCGGT	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	50, 126, 246
AsuC2I	CCSGG	4 cut(s)	145, 177, 408, 409
AsuHPI	GGTGA	2 cut(s)	328, 430
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	3 cut(s)	50, 126, 246
BamHI	GGATCC	1 cut(s)	384
BanI	GGYRCC	2 cut(s)	211, 226
BbvCI	CCTCAGC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	2 cut(s)	199, 409
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	4 cut(s)	145, 177, 408, 409
BcoDI	GTCTC	3 cut(s)	423, 436, 530
BfoI	RGCGCY	1 cut(s)	215
BisI	GCNGC	4 cut(s)	151, 215, 368, 519
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	4 cut(s)	152, 216, 369, 520
Bme1390I	CCNGG	5 cut(s)	145, 177, 256, 408, 409
Bme18I	GGWCC	3 cut(s)	50, 126, 246
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	3 cut(s)	50, 126, 246
BmiI	GGNNCC	6 cut(s)	52, 133, 149, 213, 228, 386
BmrFI	CCNGG	5 cut(s)	145, 177, 256, 408, 409
BmsI	GCATC	2 cut(s)	225, 495
Bpu10I	CCTNAGC	1 cut(s)	58
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuMI	CCSGG	4 cut(s)	145, 177, 408, 409
BsaHI	GRCGYC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	4 cut(s)	143, 204, 278, 407
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 182, 255
Bse118I	RCCGGY	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	4 cut(s)	143, 204, 278, 407
BseGI	GGATG	2 cut(s)	158, 510
BseLI	CCNNNNNNNGG	3 cut(s)	144, 182, 255
BseMII	CTCAG	2 cut(s)	72, 77
BseRI	GAGGAG	4 cut(s)	76, 79, 124, 256
BseXI	GCAGC	1 cut(s)	505
BseYI	CCCAGC	1 cut(s)	101
BshFI	GGCC	2 cut(s)	186, 277
BshNI	GGYRCC	2 cut(s)	211, 226
BshTI	ACCGGT	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	6 cut(s)	124, 129, 145, 176, 408, 446
BslFI	GGGAC	2 cut(s)	17, 84
BslI	CCNNNNNNNGG	3 cut(s)	144, 182, 255
BsmAI	GTCTC	3 cut(s)	423, 436, 530
BsmBI	CGTCTC	1 cut(s)	423
BsmFI	GGGAC	2 cut(s)	17, 84
BsnI	GGCC	2 cut(s)	186, 277
Bso31I	GGTCTC	1 cut(s)	436
BsoBI	CYCGRG	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	376, 384
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	6 cut(s)	93, 108, 151, 215, 252, 367
BspANI	GGCC	2 cut(s)	186, 277
BspCNI	CTCAG	2 cut(s)	71, 76
BspLI	GGNNCC	6 cut(s)	52, 133, 149, 213, 228, 386
BspPI	GGATC	2 cut(s)	379, 392
BspT107I	GGYRCC	2 cut(s)	211, 226
BspTNI	GGTCTC	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	143, 204, 278, 407
BssMI	GATC	2 cut(s)	376, 384
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	58, 63
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	158, 510
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	379, 387
BstMAI	GTCTC	3 cut(s)	423, 436, 530
BstMBI	GATC	2 cut(s)	376, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	235, 367, 518, 524
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	5 cut(s)	143, 175, 254, 406, 407
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	186, 277
BtsCI	GGATG	2 cut(s)	158, 510
Cac8I	GCNNGC	1 cut(s)	510
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	3 cut(s)	50, 126, 246
Cfr9I	CCCGGG	1 cut(s)	407
CpoI	CGGWCCG	1 cut(s)	126
CspAI	ACCGGT	1 cut(s)	123
CspI	CGGWCCG	1 cut(s)	126
CviAII	CATG	2 cut(s)	380, 524
DdeI	CTNAG	2 cut(s)	58, 63
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	2 cut(s)	378, 386
DpnII	GATC	2 cut(s)	376, 384
EciI	GGCGGA	2 cut(s)	82, 241
Eco130I	CCWWGG	1 cut(s)	278
Eco147I	AGGCCT	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	3 cut(s)	50, 126, 246
Eco88I	CYCGRG	1 cut(s)	407
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	529
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	278
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	2 cut(s)	383, 527
FaiI	YATR	6 cut(s)	14, 285, 359, 381, 498, 525
FaqI	GGGAC	2 cut(s)	17, 84
FatI	CATG	2 cut(s)	379, 523
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	4 cut(s)	151, 215, 368, 519
FokI	GGATG	2 cut(s)	145, 517
Fsp4HI	GCNGC	4 cut(s)	151, 215, 368, 519
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	4 cut(s)	151, 215, 368, 519
GsaI	CCCAGC	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	186, 277
HapII	CCGG	6 cut(s)	124, 129, 145, 176, 408, 446
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	383, 527
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	6 cut(s)	124, 129, 145, 176, 408, 446
HphI	GGTGA	2 cut(s)	328, 430
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	208, 394
Hpy188III	TCNNGA	2 cut(s)	343, 374
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	4 cut(s)	165, 253, 295, 495
HpyCH4V	TGCA	3 cut(s)	118, 238, 527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	235, 367, 518, 524
HpyF3I	CTNAG	2 cut(s)	58, 63
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	383, 527
HspAI	GCGC	1 cut(s)	212
KasI	GGCGCC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	376, 384
LmnI	GCTCC	2 cut(s)	137, 147
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	2 cut(s)	225, 495
MaeIII	GTNAC	2 cut(s)	436, 491
MalI	GATC	2 cut(s)	378, 386
MboI	GATC	2 cut(s)	376, 384
MboII	GAAGA	3 cut(s)	53, 56, 244
MflI	RGATCY	1 cut(s)	384
MluCI	AATT	4 cut(s)	21, 349, 412, 462
Mly113I	GGCGCC	1 cut(s)	212
Mph1103I	ATGCAT	1 cut(s)	529
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	6 cut(s)	124, 129, 145, 176, 408, 446
MspR9I	CCNGG	5 cut(s)	145, 177, 256, 408, 409
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	235, 367, 518, 524
NarI	GGCGCC	1 cut(s)	212
NciI	CCSGG	4 cut(s)	145, 177, 408, 409
NdeII	GATC	2 cut(s)	376, 384
NlaIII	CATG	2 cut(s)	383, 527
NlaIV	GGNNCC	6 cut(s)	52, 133, 149, 213, 228, 386
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	395
PinAI	ACCGGT	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	152, 216, 369, 520
PluTI	GGCGCC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	6 cut(s)	52, 133, 149, 213, 228, 386
PspPI	GGNCC	3 cut(s)	50, 126, 246
PspPPI	RGGWCCY	1 cut(s)	246
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	384
Rsr2I	CGGWCCG	1 cut(s)	126
RsrII	CGGWCCG	1 cut(s)	126
SatI	GCNGC	4 cut(s)	151, 215, 368, 519
Sau3AI	GATC	2 cut(s)	376, 384
Sau96I	GGNCC	3 cut(s)	50, 126, 246
ScrFI	CCNGG	5 cut(s)	145, 177, 256, 408, 409
SetI	ASST	7 cut(s)	59, 64, 86, 206, 251, 264, 493
SfaNI	GCATC	2 cut(s)	225, 495
SfoI	GGCGCC	1 cut(s)	213
SinI	GGWCC	3 cut(s)	50, 126, 246
SmaI	CCCGGG	1 cut(s)	409
Sse9I	AATT	4 cut(s)	21, 349, 412, 462
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	6 cut(s)	93, 108, 151, 215, 252, 367
SspDI	GGCGCC	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	5 cut(s)	143, 175, 254, 406, 407
StyI	CCWWGG	1 cut(s)	278
TaqI	TCGA	1 cut(s)	72
TaqII	GACCGA	1 cut(s)	418
TasI	AATT	4 cut(s)	21, 349, 412, 462
TauI	GCSGC	3 cut(s)	153, 217, 370
TfiI	GAWTC	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	147, 362
TspGWI	ACGGA	2 cut(s)	377, 424
TspMI	CCCGGG	1 cut(s)	407
VpaK11BI	GGWCC	3 cut(s)	50, 126, 246
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	412
XmaI	CCCGGG	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.