Rmu_sc0013155.1_g000011

DUF246 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013155.1
Physical Location & Seq
Reverse (-)
50807 .. 54845
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013155.1_g000011.1.cds

Sequence Viewer

Length: 1461 bp
atgtccctcaccgccgtccaagacccccctgaatccgaatcggaagacgggcctgattcagatcagggcgagcccaatgccgcctggcccagcagctcgttccatttccggtcggggactcctaggagccgccactcctcgccgggtcactcgccccgacccggcaccggccacactaggttcggcgacgcggattcccacacgacgtcgttttgggggggactgagtgtgcaaaggagatcggggacgaggaaagtggagagggcttggtatagcaaaaagagagtgaaagggattgtgggtgtgattgggctgttggttttgtactttgttatgaattgggttatgcttttgcggctacaagaccaccgccttcatagcaagtcttggttttccggcaaatcttcatcgtctccggcgcccatctcggaaaagtcaaaaaaatatggtaaagggaaaaagccagtgaaaggttacgaaagaatgttggcttttgctgctcatgccttggcagagggacatagtaagcccgagccaaaagatttgtggcaggagccatttgttcctgcttcttcttggaaaccttgtgcggaccaacgcagctgggaacccaatgcaccaatcaagaaagaaaatgaaggtcctgctaagaaagcttccaagtatctggctttacacctgaggtttgaaattgacatggtagcccattctttgtgtgaatttggcggaggagatgcggagcaaaaggagttggaagcttttcgacaaatccatttccctgcaattgtgcttctccagaatactacaaggctacctactccagcagtactcaggtcagaaggcttgtgtcctttgtcgcctgaagaagcagtgcttatgcttgctgctcttggtttcaagcgtaagacacatatatttgtggcaggttcacaaatatatggagggagatcaaggatgattgctttgacgagcttgtaccctaaattggtgactaaagaaaacttgcttacacccgctgaacttgaacctttcaagaattttaaatctcagttagcagcactggacttcatagcctgcactgctgccgatgcatttgccatgactgattctggaagtcaattatcatccctggtaactggttttcgcatatactatggtggagggataacaccaacaatacgaccaaacaaacggaggcttgccagcattttttcaaagaaatccagtattgaatggcgtgtgtttgagcagagagtgaggaaggcagttagacaaactaaacatgttcagccaagacccagggcaaggagtgtttatcggatccataacagaaagaattatgttaaagaatatcccaggtacctctataaacagagttctgttacaagctttgcccagactccagacaaaggatacagaccaccagaatcattcgggaagtcgattaaagataaaccatga

Protein Analysis

486

Amino Acids

54.44

Weight (kDa)

9.99

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 914
Acc65I GGTACC 1 cut(s) 1359
AccB1I GGYRCC 3 cut(s) 164, 418, 1359
AccII CGCG 1 cut(s) 191
AclWI GGATC 2 cut(s) 1315, 1328
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 2 cut(s) 719, 1036
AcuI CTGAAG 1 cut(s) 882
AcyI GRCGYC 2 cut(s) 206, 419
AfaI GTAC 4 cut(s) 326, 828, 977, 1361
AfiI CCNNNNNNNGG 6 cut(s) 161, 167, 470, 985, 1305, 1409
AflIII ACRYGT 1 cut(s) 1282
AgsI TTSAA 6 cut(s) 689, 898, 1025, 1033, 1215, 1232
AjnI CCWGG 4 cut(s) 83, 1128, 1298, 1355
AluBI AGCT 6 cut(s) 96, 603, 656, 758, 972, 1389
AluI AGCT 6 cut(s) 96, 603, 656, 758, 972, 1389
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 2 cut(s) 1315, 1328
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 3 cut(s) 50, 86, 169
ApeKI GCWGC 6 cut(s) 93, 497, 600, 884, 1055, 1082
ApoI RAATTY 2 cut(s) 719, 1036
Asp700I GAANNNNTTC 1 cut(s) 759
Asp718I GGTACC 1 cut(s) 1359
AspA2I CCTAGG 1 cut(s) 122
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 4 cut(s) 50, 87, 592, 641
AsuC2I CCSGG 2 cut(s) 144, 162
AsuHPI GGTGA 1 cut(s) 1000
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 2 cut(s) 592, 641
AvrII CCTAGG 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 680
BamHI GGATCC 1 cut(s) 1320
BanI GGYRCC 3 cut(s) 164, 418, 1359
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 6 cut(s) 105, 484, 612, 871, 1067, 1069
BccI CCATC 1 cut(s) 431
BcgI CGANNNNNNTGC 4 cut(s) 59, 93, 1076, 1110
BciT130I CCWGG 4 cut(s) 85, 1130, 1300, 1357
BciVI GTATCC 1 cut(s) 1406
BcnI CCSGG 2 cut(s) 144, 162
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 2 cut(s) 123, 177
BfoI RGCGCY 1 cut(s) 422
BfuAI ACCTGC 1 cut(s) 914
BfuI GTATCC 1 cut(s) 1406
BisI GCNGC 9 cut(s) 81, 94, 130, 356, 498, 601, 885, 1056, 1083
BlnI CCTAGG 1 cut(s) 122
BlsI GCNGC 9 cut(s) 82, 95, 131, 357, 499, 602, 886, 1057, 1084
BmcAI AGTACT 1 cut(s) 828
Bme1390I CCNGG 6 cut(s) 85, 144, 162, 1130, 1300, 1357
Bme18I GGWCC 2 cut(s) 592, 641
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 4 cut(s) 50, 87, 592, 641
BmiI GGNNCC 7 cut(s) 128, 166, 420, 555, 609, 1322, 1361
BmrFI CCNGG 6 cut(s) 85, 144, 162, 1130, 1300, 1357
BmsI GCATC 2 cut(s) 724, 1078
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 3 cut(s) 779, 804, 1386
BpuMI CCSGG 2 cut(s) 144, 162
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 2 cut(s) 206, 419
BsaJI CCNNGG 6 cut(s) 122, 507, 1128, 1298, 1299, 1355
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 167, 470, 985, 1305, 1409
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 4 cut(s) 464, 1065, 1141, 1224
Bse21I CCTNAGG 1 cut(s) 680
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 4 cut(s) 85, 1130, 1300, 1357
BseDI CCNNGG 6 cut(s) 122, 507, 1128, 1298, 1299, 1355
BseGI GGATG 2 cut(s) 960, 1124
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 6 cut(s) 161, 167, 470, 985, 1305, 1409
BseMII CTCAG 4 cut(s) 215, 671, 844, 1061
BseNI ACTGG 4 cut(s) 464, 1065, 1141, 1224
BseRI GAGGAG 2 cut(s) 127, 744
BseXI GCAGC 6 cut(s) 105, 484, 612, 871, 1067, 1069
BseYI CCCAGC 2 cut(s) 89, 603
BsgI GTGCAG 1 cut(s) 1060
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 52, 88, 171
BshNI GGYRCC 3 cut(s) 164, 418, 1359
BsiEI CGRYCG 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 6 cut(s) 109, 143, 162, 168, 396, 416
BslFI GGGAC 4 cut(s) 130, 234, 259, 531
BslI CCNNNNNNNGG 6 cut(s) 161, 167, 470, 985, 1305, 1409
BsmAI GTCTC 1 cut(s) 417
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 4 cut(s) 130, 234, 259, 531
BsnI GGCC 3 cut(s) 52, 88, 171
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 4 cut(s) 61, 239, 947, 1320
BspANI GGCC 3 cut(s) 52, 88, 171
BspCNI CTCAG 4 cut(s) 216, 672, 843, 1060
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 7 cut(s) 128, 166, 420, 555, 609, 1322, 1361
BspMI ACCTGC 1 cut(s) 914
BspPI GGATC 2 cut(s) 1315, 1328
BspT107I GGYRCC 3 cut(s) 164, 418, 1359
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 4 cut(s) 464, 1065, 1141, 1224
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 6 cut(s) 122, 507, 1128, 1298, 1299, 1355
BssMI GATC 4 cut(s) 61, 239, 947, 1320
BssNI GRCGYC 2 cut(s) 206, 419
BssT1I CCWWGG 2 cut(s) 122, 507
Bst2UI CCWGG 4 cut(s) 85, 1130, 1300, 1357
BstACI GRCGYC 2 cut(s) 206, 419
BstC8I GCNNGC 5 cut(s) 71, 882, 1075, 1200, 1204
BstDEI CTNAG 5 cut(s) 224, 648, 680, 830, 1047
BstF5I GGATG 2 cut(s) 960, 1124
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 4 cut(s) 64, 242, 950, 1323
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 4 cut(s) 61, 239, 947, 1320
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 7 cut(s) 355, 378, 497, 503, 653, 1079, 1088
BstNI CCWGG 4 cut(s) 85, 1130, 1300, 1357
BstNSI RCATGY 1 cut(s) 1286
BstSCI CCNGG 6 cut(s) 83, 142, 160, 1128, 1298, 1355
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 6 cut(s) 105, 484, 612, 871, 1067, 1069
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 1320
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 1 cut(s) 1320
Bsu36I CCTNAGG 1 cut(s) 680
BsuI GTATCC 1 cut(s) 1406
BsuRI GGCC 3 cut(s) 52, 88, 171
BtsCI GGATG 2 cut(s) 960, 1124
BtsI GCAGTG 2 cut(s) 876, 1077
BtsIMutI CAGTG 4 cut(s) 471, 876, 1058, 1077
BveI ACCTGC 1 cut(s) 914
Cac8I GCNNGC 5 cut(s) 71, 882, 1075, 1200, 1204
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 4 cut(s) 50, 87, 592, 641
CseI GACGC 1 cut(s) 197
Csp6I GTAC 4 cut(s) 325, 827, 976, 1360
CviAII CATG 5 cut(s) 503, 697, 1099, 1283, 1458
CviQI GTAC 4 cut(s) 325, 827, 976, 1360
DdeI CTNAG 5 cut(s) 224, 648, 680, 830, 1047
DinI GGCGCC 1 cut(s) 420
DpnI GATC 4 cut(s) 63, 241, 949, 1322
DpnII GATC 4 cut(s) 61, 239, 947, 1320
DraI TTTAAA 1 cut(s) 1042
EaeI YGGCCR 1 cut(s) 169
EciI GGCGGA 1 cut(s) 741
Eco130I CCWWGG 2 cut(s) 122, 507
Eco24I GRGCYC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 592, 641
Eco57I CTGAAG 1 cut(s) 882
Eco81I CCTNAGG 1 cut(s) 680
Eco88I CYCGRG 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 641
EcoRII CCWGG 4 cut(s) 83, 1128, 1298, 1355
EcoT14I CCWWGG 2 cut(s) 122, 507
EcoT22I ATGCAT 1 cut(s) 1093
EcoT38I GRGCYC 1 cut(s) 75
EgeI GGCGCC 1 cut(s) 420
EheI GGCGCC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 122, 507
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 5 cut(s) 506, 700, 1102, 1286, 1461
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FaqI GGGAC 4 cut(s) 130, 234, 259, 531
FatI CATG 5 cut(s) 502, 696, 1098, 1282, 1457
FauI CCCGC 1 cut(s) 1021
Fnu4HI GCNGC 9 cut(s) 81, 94, 130, 356, 498, 601, 885, 1056, 1083
FokI GGATG 2 cut(s) 967, 1111
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 9 cut(s) 81, 94, 130, 356, 498, 601, 885, 1056, 1083
FspBI CTAG 2 cut(s) 123, 177
GlaI GCGC 1 cut(s) 420
GluI GCNGC 9 cut(s) 81, 94, 130, 356, 498, 601, 885, 1056, 1083
GsaI CCCAGC 2 cut(s) 93, 607
GsuI CTGGAG 3 cut(s) 779, 804, 1386
HaeII RGCGCY 1 cut(s) 422
HaeIII GGCC 3 cut(s) 52, 88, 171
HapII CCGG 6 cut(s) 109, 143, 162, 168, 396, 416
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 421
Hin1I GRCGYC 2 cut(s) 206, 419
Hin1II CATG 5 cut(s) 506, 700, 1102, 1286, 1461
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HindIII AAGCTT 3 cut(s) 654, 756, 1387
HinfI GANTC 8 cut(s) 32, 38, 56, 118, 194, 1106, 1399, 1427
HpaII CCGG 6 cut(s) 109, 143, 162, 168, 396, 416
HphI GGTGA 1 cut(s) 1000
Hpy166II GTNNAC 1 cut(s) 929
Hpy188I TCNGA 6 cut(s) 37, 43, 61, 430, 838, 1320
Hpy188III TCNNGA 6 cut(s) 625, 796, 1033, 1110, 1403, 1435
Hpy8I GTNNAC 1 cut(s) 929
Hpy99I CGWCG 3 cut(s) 191, 208, 211
HpyAV CCTTC 4 cut(s) 383, 632, 833, 1255
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 5 cut(s) 232, 617, 782, 1077, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 355, 378, 497, 503, 653, 1079, 1088
HpyF3I CTNAG 5 cut(s) 224, 648, 680, 830, 1047
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 2 cut(s) 206, 419
Hsp92II CATG 5 cut(s) 506, 700, 1102, 1286, 1461
HspAI GCGC 1 cut(s) 419
KasI GGCGCC 1 cut(s) 418
KpnI GGTACC 1 cut(s) 1363
Kzo9I GATC 4 cut(s) 61, 239, 947, 1320
LmnI GCTCC 3 cut(s) 126, 553, 739
Lsp1109I GCAGC 6 cut(s) 105, 484, 612, 871, 1067, 1069
LweI GCATC 2 cut(s) 724, 1078
MaeI CTAG 2 cut(s) 123, 177
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 5 cut(s) 146, 473, 988, 1132, 1381
MalI GATC 4 cut(s) 63, 241, 949, 1322
MboI GATC 4 cut(s) 61, 239, 947, 1320
MboII GAAGA 4 cut(s) 56, 396, 564, 875
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 1 cut(s) 1320
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 8 cut(s) 337, 690, 719, 783, 983, 1036, 1118, 1336
Mly113I GGCGCC 1 cut(s) 419
MlyI GAGTC 2 cut(s) 112, 1393
MmeI TCCRAC 1 cut(s) 732
Mph1103I ATGCAT 1 cut(s) 1093
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 3 cut(s) 1041, 1344, 1446
MspA1I CMGCKG 2 cut(s) 603, 1016
MspI CCGG 6 cut(s) 109, 143, 162, 168, 396, 416
MspR9I CCNGG 6 cut(s) 85, 144, 162, 1130, 1300, 1357
MunI CAATTG 1 cut(s) 783
MvaI CCWGG 4 cut(s) 85, 1130, 1300, 1357
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 7 cut(s) 355, 378, 497, 503, 653, 1079, 1088
NarI GGCGCC 1 cut(s) 419
NciI CCSGG 2 cut(s) 144, 162
NdeII GATC 4 cut(s) 61, 239, 947, 1320
NlaIII CATG 5 cut(s) 506, 700, 1102, 1286, 1461
NlaIV GGNNCC 7 cut(s) 128, 166, 420, 555, 609, 1322, 1361
NmuCI GTSAC 2 cut(s) 146, 988
NsiI ATGCAT 1 cut(s) 1093
NspI RCATGY 1 cut(s) 1286
PasI CCCWGGG 1 cut(s) 1299
PciI ACATGT 1 cut(s) 1282
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 6 cut(s) 32, 38, 56, 194, 1106, 1427
PkrI GCNGC 9 cut(s) 82, 95, 131, 357, 499, 602, 886, 1057, 1084
PleI GAGTC 2 cut(s) 112, 1393
PluTI GGCGCC 1 cut(s) 422
PpsI GAGTC 2 cut(s) 112, 1393
PpuMI RGGWCCY 1 cut(s) 641
PscI ACATGT 1 cut(s) 1282
Psp5II RGGWCCY 1 cut(s) 641
Psp6I CCWGG 4 cut(s) 83, 1128, 1298, 1355
PspFI CCCAGC 2 cut(s) 89, 603
PspGI CCWGG 4 cut(s) 83, 1128, 1298, 1355
PspN4I GGNNCC 7 cut(s) 128, 166, 420, 555, 609, 1322, 1361
PspPI GGNCC 4 cut(s) 50, 87, 592, 641
PspPPI RGGWCCY 1 cut(s) 641
PsuI RGATCY 1 cut(s) 1320
PvuII CAGCTG 1 cut(s) 603
RsaI GTAC 4 cut(s) 326, 828, 977, 1361
RsaNI GTAC 4 cut(s) 325, 827, 976, 1360
SaqAI TTAA 3 cut(s) 1041, 1344, 1446
SatI GCNGC 9 cut(s) 81, 94, 130, 356, 498, 601, 885, 1056, 1083
Sau3AI GATC 4 cut(s) 61, 239, 947, 1320
Sau96I GGNCC 4 cut(s) 50, 87, 592, 641
ScaI AGTACT 1 cut(s) 828
SchI GAGTC 2 cut(s) 112, 1393
ScrFI CCNGG 6 cut(s) 85, 144, 162, 1130, 1300, 1357
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 2 cut(s) 724, 1078
SfoI GGCGCC 1 cut(s) 420
SinI GGWCC 2 cut(s) 592, 641
Sse9I AATT 8 cut(s) 337, 690, 719, 783, 983, 1036, 1118, 1336
SspDI GGCGCC 1 cut(s) 418
SspMI CTAG 2 cut(s) 123, 177
StyD4I CCNGG 6 cut(s) 83, 142, 160, 1128, 1298, 1355
StyI CCWWGG 2 cut(s) 122, 507
TaiI ACGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 763, 1442
TasI AATT 8 cut(s) 337, 690, 719, 783, 983, 1036, 1118, 1336
TatI WGTACW 2 cut(s) 324, 826
TauI GCSGC 3 cut(s) 83, 132, 358
TfiI GAWTC 6 cut(s) 32, 38, 56, 194, 1106, 1427
Tru1I TTAA 3 cut(s) 1041, 1344, 1446
Tru9I TTAA 3 cut(s) 1041, 1344, 1446
TscAI CASTG 4 cut(s) 471, 876, 1065, 1084
TseFI GTSAC 2 cut(s) 146, 988
TseI GCWGC 6 cut(s) 93, 497, 600, 884, 1055, 1082
Tsp45I GTSAC 2 cut(s) 146, 988
TspDTI ATGAA 5 cut(s) 350, 365, 396, 651, 1057
TspGWI ACGGA 1 cut(s) 1207
TspRI CASTG 4 cut(s) 471, 876, 1065, 1084
VpaK11BI GGWCC 2 cut(s) 592, 641
XapI RAATTY 2 cut(s) 719, 1036
XceI RCATGY 1 cut(s) 1286
XcmI CCANNNNNNNNNTGG 1 cut(s) 543
XmaJI CCTAGG 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 2 cut(s) 123, 177
ZraI GACGTC 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 828
Zsp2I ATGCAT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.