MD05G1352000.v1.1

DUF246 domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
46876025 .. 46879026
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1352000.v1.1.491

Sequence Viewer

Length: 1416 bp
ATGGGTCCAAATCCATGCGACCCGACGGCACACAAATCGATGTCCGTAAACATAGTTCAAATTGAAACAGACCCACCTCAGCTCAGCCCCTCGACCCCACCACCTCCTCCTCCGCTTGTCCCAACCCCACCTTGCTGCATTACCGGTCCGGCTCCTCCACTCCCTGGAGCCGCCCGTCATCCCCAACTAGCTCGCCGGGAATCTGCCTCACTGGGAATCTGCCTCACTTGGTTTTCAACCTCGGAGGCGCAGCCGTCGTATTGGGAGATGGATAGTGGGCTAAAGATGCAGAGGAGGGCCTCGACCAGGAAGGTGGCTGAGAGGGCATGGTGTAGCAAAAAGCGAGCGAAATGGTTTGTGGGGGTGATTGGATTGTTGGTTTTATTTTTCTTGATGAATTGCGTTATGCTCTTGCGGCTTCAAGATCATGGGATCCGTTCTGAATCTGGGTTTTCCGGGAATTCGTCTGTGTCTTCGGTTTCTGTCACCATTCGGGAAAAATGGAGAAAAATTGGTAAAGGAAAAAAGGCACAGAAGGGTAACTATGGAAGGATGCTGGCTTTGGCTTCCCTTGCATTGGCAGAGGGGCAGAATAAACCTGTGCCGAAAGATCTGTGGCTGGAGCCATTAGTTCCTGCTGTTTCCTGGAAACCTTGTTCGGACCAACGGAGCTGGGAACCTAATGCGGGGAAGAATGGATATATTTTGGTCACTGCAAACGGTGGGATGAACCAGCAGCGAGTAGCTGTTTGCAATGCTGTCGCTGTTGCACGACTACTCAATTCAACCCTGGCTGAGCATTTTATTAACTACTTGACTCCTGATATTCGGATAGTGAAGGAACTTCCAAAGGAGCTACAGTCATTAGATTTGGAAGCAATTGGTAGTGTTGTGACAGATGTAGACATCCCCAAAGAGGCAAAGCCAAGTTTTTACTTGAAACGCATCATCCCCATTCTACTTAAGAACGGAATTGTACATTTTCTTGGATTCGGGCATCGCTTGCCATTTGATCCCATACCATTTCAATTGCGGAGACTTCGATGCAGATGTAATTTTCACGCCCTTCAATTTGTCCCCAAGATACAAGAAGTTGGTGCTTTACTTCTTCAAAGATTGCGCCTAAACAAAAGTCACCCTGGACAGCTTGATCGCTTTTTTGTTGGGTCATATGCAGAACCAGTCAAGAAACAAAACAAAAGCCGTGCTAAGAAAGCTTCCAGATATCTAGCTTTGCACCTGAGGTTTGAAATTGACATGGTAGCTCATTCTTTATGTGAGTTTGGTGGAGGTGATGAAGAGAGAAAAGAGTTGGAAGCATATCGTGAAATCCACTTCCCCACACTGACACTTCTTAGGAAGACTAAAACGCTGCCTACTCCTGCAGAGCTCAGGGAAGAAGGCTTCTGTCCCTGA

Protein Analysis

472

Amino Acids

52.58

Weight (kDa)

9.68

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 234 - 264 1.4e-07 GDP-fucose protein O-fucosyltransferase
O-FucT PF10250 267 - 463 3.5e-35 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 1 cut(s) 903
AciI CCGC 5 cut(s) 113, 171, 415, 686, 1033
AclWI GGATC 3 cut(s) 427, 440, 1007
AcsI RAATTY 1 cut(s) 460
AfaI GTAC 1 cut(s) 978
AfiI CCNNNNNNNGG 5 cut(s) 164, 306, 577, 686, 916
AflII CTTAAG 1 cut(s) 962
AgeI ACCGGT 1 cut(s) 143
AjnI CCWGG 5 cut(s) 163, 305, 644, 789, 1138
AloI GAACNNNNNNTCC 2 cut(s) 640, 672
Alw21I GWGCWC 1 cut(s) 1392
Alw26I GTCTC 1 cut(s) 1030
AlwI GGATC 3 cut(s) 427, 440, 1007
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 4 cut(s) 135, 250, 736, 1372
ApoI RAATTY 1 cut(s) 460
AsiGI ACCGGT 1 cut(s) 143
AspLEI GCGC 2 cut(s) 250, 1122
AspS9I GGNCC 4 cut(s) 5, 146, 297, 661
AsuC2I CCSGG 2 cut(s) 197, 457
AsuHPI GGTGA 4 cut(s) 376, 478, 1127, 1304
AvaII GGWCC 3 cut(s) 5, 146, 661
AxyI CCTNAGG 1 cut(s) 1241
BamHI GGATCC 1 cut(s) 432
BanII GRGCYC 1 cut(s) 1392
BbsI GAAGAC 2 cut(s) 465, 1367
Bbv12I GWGCWC 1 cut(s) 1392
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 4 cut(s) 122, 262, 748, 1359
BccI CCATC 1 cut(s) 262
BceAI ACGGC 3 cut(s) 42, 238, 1188
BcgI CGANNNNNNTGC 4 cut(s) 18, 52, 742, 776
BciT130I CCWGG 5 cut(s) 165, 307, 646, 791, 1140
BcnI CCSGG 2 cut(s) 197, 457
BcoDI GTCTC 1 cut(s) 1030
BfaI CTAG 2 cut(s) 188, 1229
BfmI CTRYAG 2 cut(s) 857, 1383
BfrI CTTAAG 1 cut(s) 962
BglII AGATCT 1 cut(s) 610
BisI GCNGC 6 cut(s) 136, 171, 251, 416, 737, 1373
BlpI GCTNAGC 2 cut(s) 83, 795
BlsI GCNGC 6 cut(s) 137, 172, 252, 417, 738, 1374
Bme1390I CCNGG 7 cut(s) 165, 197, 307, 457, 646, 791, 1140
Bme18I GGWCC 3 cut(s) 5, 146, 661
BmgT120I GGNCC 4 cut(s) 5, 146, 297, 661
BmiI GGNNCC 6 cut(s) 6, 153, 169, 434, 624, 678
BmrFI CCNGG 7 cut(s) 165, 197, 307, 457, 646, 791, 1140
BmrI ACTGGG 1 cut(s) 221
BmsI GCATC 5 cut(s) 276, 543, 954, 1006, 1034
BmuI ACTGGG 1 cut(s) 221
BpiI GAAGAC 2 cut(s) 465, 1367
BpmI CTGGAG 2 cut(s) 186, 641
Bpu10I CCTNAGC 2 cut(s) 78, 1391
Bpu1102I GCTNAGC 2 cut(s) 83, 795
BpuMI CCSGG 2 cut(s) 197, 457
Bsa29I ATCGAT 1 cut(s) 38
BsaJI CCNNGG 4 cut(s) 163, 240, 789, 1138
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 845, 875
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 306, 577, 686, 916
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 216, 1181
Bse21I CCTNAGG 1 cut(s) 1241
Bse3DI GCAATG 1 cut(s) 760
BseBI CCWGG 5 cut(s) 165, 307, 646, 791, 1140
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 4 cut(s) 163, 240, 789, 1138
BseGI GGATG 5 cut(s) 178, 558, 732, 906, 948
BseLI CCNNNNNNNGG 5 cut(s) 164, 306, 577, 686, 916
BseMI GCAATG 1 cut(s) 760
BseMII CTCAG 6 cut(s) 92, 97, 309, 786, 1232, 1405
BseNI ACTGG 2 cut(s) 216, 1181
BseRI GAGGAG 4 cut(s) 96, 99, 144, 307
BseXI GCAGC 4 cut(s) 122, 262, 748, 1359
BseYI CCCAGC 1 cut(s) 672
BshFI GGCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 1392
BsiSI CCGG 4 cut(s) 144, 149, 196, 456
BslFI GGGAC 3 cut(s) 104, 1061, 1395
BslI CCNNNNNNNGG 5 cut(s) 164, 306, 577, 686, 916
BsmAI GTCTC 1 cut(s) 1030
BsmFI GGGAC 3 cut(s) 104, 1061, 1395
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 1392
Bsp1407I TGTACA 1 cut(s) 976
Bsp143I GATC 5 cut(s) 424, 432, 610, 1012, 1150
Bsp1720I GCTNAGC 2 cut(s) 83, 795
BspACI CCGC 5 cut(s) 113, 171, 415, 686, 1033
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 6 cut(s) 91, 96, 310, 787, 1233, 1404
BspDI ATCGAT 1 cut(s) 38
BspLI GGNNCC 6 cut(s) 6, 153, 169, 434, 624, 678
BspMAI CTGCAG 1 cut(s) 1387
BspPI GGATC 3 cut(s) 427, 440, 1007
BspTI CTTAAG 1 cut(s) 962
BsrDI GCAATG 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 976
BsrI ACTGG 2 cut(s) 216, 1181
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 4 cut(s) 163, 240, 789, 1138
BssMI GATC 5 cut(s) 424, 432, 610, 1012, 1150
Bst2UI CCWGG 5 cut(s) 165, 307, 646, 791, 1140
Bst4CI ACNGT 2 cut(s) 722, 861
Bst6I CTCTTC 1 cut(s) 1293
BstAFI CTTAAG 1 cut(s) 962
BstAPI GCANNNNNTGC 1 cut(s) 1003
BstAUI TGTACA 1 cut(s) 976
BstC8I GCNNGC 4 cut(s) 193, 345, 558, 1004
BstDEI CTNAG 8 cut(s) 78, 83, 318, 795, 1209, 1241, 1355, 1391
BstENI CCTNNNNNAGG 1 cut(s) 304
BstF5I GGATG 5 cut(s) 178, 558, 732, 906, 948
BstHHI GCGC 2 cut(s) 250, 1122
BstKTI GATC 5 cut(s) 427, 435, 613, 1015, 1153
BstMAI GTCTC 1 cut(s) 1030
BstMBI GATC 5 cut(s) 424, 432, 610, 1012, 1150
BstMWI GCNNNNNNNGC 6 cut(s) 286, 323, 415, 572, 1003, 1214
BstNI CCWGG 5 cut(s) 165, 307, 646, 791, 1140
BstSCI CCNGG 7 cut(s) 163, 195, 305, 455, 644, 789, 1138
BstSFI CTRYAG 2 cut(s) 857, 1383
BstV1I GCAGC 4 cut(s) 122, 262, 748, 1359
BstV2I GAAGAC 2 cut(s) 465, 1367
BstX2I RGATCY 2 cut(s) 432, 610
BstXI CCANNNNNNTGG 1 cut(s) 313
BstYI RGATCY 2 cut(s) 432, 610
Bsu15I ATCGAT 1 cut(s) 38
Bsu36I CCTNAGG 1 cut(s) 1241
BsuRI GGCC 1 cut(s) 299
BsuTUI ATCGAT 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 983
BtsCI GGATG 5 cut(s) 178, 558, 732, 906, 948
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 3 cut(s) 209, 711, 1343
Cac8I GCNNGC 4 cut(s) 193, 345, 558, 1004
CfoI GCGC 2 cut(s) 250, 1122
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 4 cut(s) 5, 146, 297, 661
ClaI ATCGAT 1 cut(s) 38
CpoI CGGWCCG 1 cut(s) 146
Csp6I GTAC 1 cut(s) 977
CspAI ACCGGT 1 cut(s) 143
CspI CGGWCCG 1 cut(s) 146
CviAII CATG 4 cut(s) 15, 327, 428, 1258
CviQI GTAC 1 cut(s) 977
DdeI CTNAG 8 cut(s) 78, 83, 318, 795, 1209, 1241, 1355, 1391
DpnI GATC 5 cut(s) 426, 434, 612, 1014, 1152
DpnII GATC 5 cut(s) 424, 432, 610, 1012, 1150
Eam1104I CTCTTC 1 cut(s) 1293
EarI CTCTTC 1 cut(s) 1293
Ecl136II GAGCTC 1 cut(s) 1390
Eco24I GRGCYC 1 cut(s) 1392
Eco32I GATATC 1 cut(s) 1226
Eco47I GGWCC 3 cut(s) 5, 146, 661
Eco53kI GAGCTC 1 cut(s) 1390
Eco81I CCTNAGG 1 cut(s) 1241
EcoICRI GAGCTC 1 cut(s) 1390
EcoNI CCTNNNNNAGG 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 460
EcoRII CCWGG 5 cut(s) 163, 305, 644, 789, 1138
EcoRV GATATC 1 cut(s) 1226
EcoT38I GRGCYC 1 cut(s) 1392
FaeI CATG 4 cut(s) 18, 330, 431, 1261
FaqI GGGAC 3 cut(s) 104, 1061, 1395
FatI CATG 4 cut(s) 14, 326, 427, 1257
FauI CCCGC 1 cut(s) 679
FauNDI CATATG 1 cut(s) 1171
FblI GTMKAC 1 cut(s) 903
Fnu4HI GCNGC 6 cut(s) 136, 171, 251, 416, 737, 1373
FokI GGATG 5 cut(s) 165, 565, 739, 893, 935
FriOI GRGCYC 1 cut(s) 1392
Fsp4HI GCNGC 6 cut(s) 136, 171, 251, 416, 737, 1373
FspBI CTAG 2 cut(s) 188, 1229
GlaI GCGC 2 cut(s) 249, 1121
GluI GCNGC 6 cut(s) 136, 171, 251, 416, 737, 1373
GsaI CCCAGC 1 cut(s) 676
GsuI CTGGAG 2 cut(s) 186, 641
HaeIII GGCC 1 cut(s) 299
HapII CCGG 4 cut(s) 144, 149, 196, 456
HhaI GCGC 2 cut(s) 250, 1122
Hin1II CATG 4 cut(s) 18, 330, 431, 1261
Hin6I GCGC 2 cut(s) 248, 1120
HinP1I GCGC 2 cut(s) 248, 1120
HindIII AAGCTT 1 cut(s) 1215
HinfI GANTC 5 cut(s) 200, 216, 443, 817, 990
HpaII CCGG 4 cut(s) 144, 149, 196, 456
HphI GGTGA 4 cut(s) 376, 478, 1127, 1304
Hpy166II GTNNAC 2 cut(s) 49, 904
Hpy188I TCNGA 4 cut(s) 244, 442, 661, 831
Hpy188III TCNNGA 7 cut(s) 391, 422, 494, 821, 1186, 1221, 1325
Hpy8I GTNNAC 2 cut(s) 49, 904
Hpy99I CGWCG 2 cut(s) 28, 259
HpyAV CCTTC 6 cut(s) 304, 529, 543, 832, 1076, 1394
HpyCH4III ACNGT 2 cut(s) 722, 861
HpyF10VI GCNNNNNNNGC 6 cut(s) 286, 323, 415, 572, 1003, 1214
HpyF3I CTNAG 8 cut(s) 78, 83, 318, 795, 1209, 1241, 1355, 1391
Hsp92II CATG 4 cut(s) 18, 330, 431, 1261
HspAI GCGC 2 cut(s) 248, 1120
Kzo9I GATC 5 cut(s) 424, 432, 610, 1012, 1150
LmnI GCTCC 5 cut(s) 157, 167, 622, 669, 853
Lsp1109I GCAGC 4 cut(s) 122, 262, 748, 1359
LweI GCATC 5 cut(s) 276, 543, 954, 1006, 1034
MaeI CTAG 2 cut(s) 188, 1229
MaeIII GTNAC 5 cut(s) 484, 539, 709, 892, 1133
MalI GATC 5 cut(s) 426, 434, 612, 1014, 1152
MboI GATC 5 cut(s) 424, 432, 610, 1012, 1150
MboII GAAGA 6 cut(s) 465, 703, 1100, 1310, 1372, 1409
MfeI CAATTG 2 cut(s) 879, 1028
MflI RGATCY 2 cut(s) 432, 610
MhlI GDGCHC 1 cut(s) 1392
MlyI GAGTC 1 cut(s) 811
MmeI TCCRAC 1 cut(s) 1293
MseI TTAA 2 cut(s) 807, 963
MspCI CTTAAG 1 cut(s) 962
MspI CCGG 4 cut(s) 144, 149, 196, 456
MspR9I CCNGG 7 cut(s) 165, 197, 307, 457, 646, 791, 1140
MunI CAATTG 2 cut(s) 879, 1028
MvaI CCWGG 5 cut(s) 165, 307, 646, 791, 1140
MwoI GCNNNNNNNGC 6 cut(s) 286, 323, 415, 572, 1003, 1214
NciI CCSGG 2 cut(s) 197, 457
NdeI CATATG 1 cut(s) 1171
NdeII GATC 5 cut(s) 424, 432, 610, 1012, 1150
NlaIII CATG 4 cut(s) 18, 330, 431, 1261
NlaIV GGNNCC 6 cut(s) 6, 153, 169, 434, 624, 678
NmuCI GTSAC 4 cut(s) 484, 709, 892, 1133
PfeI GAWTC 4 cut(s) 200, 216, 443, 990
PflMI CCANNNNNTGG 1 cut(s) 164
PfoI TCCNGGA 2 cut(s) 455, 644
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 6 cut(s) 137, 172, 252, 417, 738, 1374
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
Psp124BI GAGCTC 1 cut(s) 1392
Psp6I CCWGG 5 cut(s) 163, 305, 644, 789, 1138
PspFI CCCAGC 1 cut(s) 672
PspGI CCWGG 5 cut(s) 163, 305, 644, 789, 1138
PspN4I GGNNCC 6 cut(s) 6, 153, 169, 434, 624, 678
PspPI GGNCC 4 cut(s) 5, 146, 297, 661
PsrI GAACNNNNNNTAC 2 cut(s) 39, 71
PstI CTGCAG 1 cut(s) 1387
PsuI RGATCY 2 cut(s) 432, 610
RsaI GTAC 1 cut(s) 978
RsaNI GTAC 1 cut(s) 977
Rsr2I CGGWCCG 1 cut(s) 146
RsrII CGGWCCG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 1392
SaqAI TTAA 2 cut(s) 807, 963
SatI GCNGC 6 cut(s) 136, 171, 251, 416, 737, 1373
Sau3AI GATC 5 cut(s) 424, 432, 610, 1012, 1150
Sau96I GGNCC 4 cut(s) 5, 146, 297, 661
SchI GAGTC 1 cut(s) 811
ScrFI CCNGG 7 cut(s) 165, 197, 307, 457, 646, 791, 1140
SduI GDGCHC 1 cut(s) 1392
SfaNI GCATC 5 cut(s) 276, 543, 954, 1006, 1034
SfcI CTRYAG 2 cut(s) 857, 1383
SinI GGWCC 3 cut(s) 5, 146, 661
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
SsiI CCGC 5 cut(s) 113, 171, 415, 686, 1033
SspMI CTAG 2 cut(s) 188, 1229
SstI GAGCTC 1 cut(s) 1392
StyD4I CCNGG 7 cut(s) 163, 195, 305, 455, 644, 789, 1138
TaaI ACNGT 2 cut(s) 722, 861
TaqI TCGA 4 cut(s) 38, 92, 302, 1042
TatI WGTACW 1 cut(s) 976
TauI GCSGC 2 cut(s) 173, 418
TfiI GAWTC 4 cut(s) 200, 216, 443, 990
Tru1I TTAA 2 cut(s) 807, 963
Tru9I TTAA 2 cut(s) 807, 963
TscAI CASTG 3 cut(s) 216, 718, 1350
TseFI GTSAC 4 cut(s) 484, 709, 892, 1133
TseI GCWGC 4 cut(s) 135, 250, 736, 1372
Tsp45I GTSAC 4 cut(s) 484, 709, 892, 1133
TspDTI ATGAA 3 cut(s) 410, 743, 1311
TspGWI ACGGA 4 cut(s) 34, 425, 682, 984
TspRI CASTG 3 cut(s) 216, 718, 1350
Van91I CCANNNNNTGG 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 962
VpaK11BI GGWCC 3 cut(s) 5, 146, 661
XagI CCTNNNNNAGG 1 cut(s) 304
XapI RAATTY 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 903
XspI CTAG 2 cut(s) 188, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.