Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013155.1

Orthogroup ID

OG0002069

Physical Location & Seq

Genomic Coordinates Reverse (-)

1783 .. 4420

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013155.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgaattgggttatgcttttgcggctacaagaccaccgccttcatagcaagtcttggttttccggcaaatcttcatcgtctccggcgcccatctcggaaaagtcaaaaaaatatggtaaagggaaaaagccagtgaaaggttacgaaagaatgttggcttttgctgctcatgccttggcagagggacatagtaagcccgagccaaaagatttgtggcaggagccatttgttcctgcttcttcttggaaaccttgtgcggaccaacgcagctgggaacccaatgagggaaagaatggatatataatggtcactgcaaatggtgggatgaaccagcagcgggttgcggtttgcaacattgttgttattgcacgattactcaatgcaaccctggtggttcccaaatttttgtatagtagtatatggagggatgtaagcagagcaccaatcaagaaagaaaacgaaggtcctgctaagaaagcttccaagtatctggtttttcacctgaggtttgaaattgacatgttagctcattctttgtgtgaatttggtggaggagatgcggagcaaaaggagttggaagcttatcgagaattatcaccaccccaaagctgtggacatcactttgtacagtgtgtacctttccttctcctactcctactttcgagacatgctgcaacatgtttctgttattgttttattgaggctcaatttttgtcatcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

240

Amino Acids

27.06

Weight (kDa)

9.15

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11990 AT1G11990 AT1G62330
fragaria_vesca	FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440 FvH4_3g01440
malus_domestica	MD05G1352000.v1.1 MD05G1352100.v1.1 MD10G1326100.v1.1
prunus_persica	Prupe.4G015600_v2.0.a1 Prupe.4G015600_v2.0.a1
pyrus_communis	pycom05g31900 pycom10g27610
rosa_chinensis	RchiOBHm_Chr5g0002251 RchiOBHm_Chr5g0002271
rosa_laevigata	RLG00000031006 RLG00000031013
rosa_multiflora	Rmu_sc0001492.1_g000007 Rmu_sc0013155.1_g000002 Rmu_sc0013155.1_g000011
rosa_roxburghii	Rroxscaffold_1G00073660 Rroxscaffold_1G00073680
rosa_rugosa	Rorug04G0394800
rosa_samantha	Rh5AG017400 Rh5BG020200 Rh5CG019000 Rh5DG018200
rosa_wichuraiana	Rw5G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AciI	CCGC	6 cut(s)	22, 37, 257, 337, 344, 560
AcsI	RAATTY	2 cut(s)	401, 542
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	2 cut(s)	627, 636
AfiI	CCNNNNNNNGG	3 cut(s)	137, 284, 337
AflIII	ACRYGT	2 cut(s)	519, 677
AgsI	TTSAA	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	5 cut(s)	270, 479, 527, 581, 609
AluI	AGCT	5 cut(s)	270, 479, 527, 581, 609
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	2 cut(s)	84, 658
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	4 cut(s)	164, 267, 334, 671
ApoI	RAATTY	2 cut(s)	401, 542
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	259, 464
AsuHPI	GGTGA	2 cut(s)	491, 588
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	259, 464
AxyI	CCTNAGG	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	85
BarI	GAAGNNNNNNTAC	2 cut(s)	627, 659
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	4 cut(s)	151, 279, 346, 658
BccI	CCATC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	84, 658
BfoI	RGCGCY	1 cut(s)	89
BisI	GCNGC	5 cut(s)	23, 165, 268, 335, 672
BlsI	GCNGC	5 cut(s)	24, 166, 269, 336, 673
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	2 cut(s)	259, 464
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	259, 464
BmiI	GGNNCC	4 cut(s)	87, 222, 276, 396
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	174, 387
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 284, 337
Bse1I	ACTGG	1 cut(s)	131
Bse21I	CCTNAGG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	174, 387
BseGI	GGATG	3 cut(s)	330, 433, 716
BseLI	CCNNNNNNNGG	3 cut(s)	137, 284, 337
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	567
BseXI	GCAGC	4 cut(s)	151, 279, 346, 658
BseYI	CCCAGC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	63, 83
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	3 cut(s)	137, 284, 337
BsmAI	GTCTC	2 cut(s)	84, 658
BsmBI	CGTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	625
BspACI	CCGC	6 cut(s)	22, 37, 257, 337, 344, 560
BspCNI	CTCAG	1 cut(s)	495
BspLI	GGNNCC	4 cut(s)	87, 222, 276, 396
BspT107I	GGYRCC	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	174, 387
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	630
BstACI	GRCGYC	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	625
BstDEI	CTNAG	2 cut(s)	471, 503
BstF5I	GGATG	3 cut(s)	330, 433, 716
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	84, 658
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 45, 164, 170, 476
BstNI	CCWGG	1 cut(s)	389
BstNSI	RCATGY	3 cut(s)	523, 671, 681
BstSCI	CCNGG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	151, 279, 346, 658
BstXI	CCANNNNNNTGG	2 cut(s)	490, 611
Bsu36I	CCTNAGG	1 cut(s)	503
BtsCI	GGATG	3 cut(s)	330, 433, 716
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	3 cut(s)	138, 309, 635
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	259, 464
Csp6I	GTAC	2 cut(s)	626, 635
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	4 cut(s)	170, 520, 668, 678
CviQI	GTAC	2 cut(s)	626, 635
DdeI	CTNAG	2 cut(s)	471, 503
DinI	GGCGCC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	259, 464
Eco81I	CCTNAGG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	174
EgeI	GGCGCC	1 cut(s)	87
EheI	GGCGCC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	4 cut(s)	173, 523, 671, 681
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	4 cut(s)	169, 519, 667, 677
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	5 cut(s)	23, 165, 268, 335, 672
FokI	GGATG	3 cut(s)	337, 440, 703
Fsp4HI	GCNGC	5 cut(s)	23, 165, 268, 335, 672
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	5 cut(s)	23, 165, 268, 335, 672
GsaI	CCCAGC	1 cut(s)	274
HaeII	RGCGCY	1 cut(s)	89
HapII	CCGG	2 cut(s)	63, 83
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	173, 523, 671, 681
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	2 cut(s)	477, 579
HpaII	CCGG	2 cut(s)	63, 83
HphI	GGTGA	2 cut(s)	491, 588
Hpy166II	GTNNAC	2 cut(s)	614, 635
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	3 cut(s)	448, 587, 663
Hpy8I	GTNNAC	2 cut(s)	614, 635
HpyAV	CCTTC	3 cut(s)	50, 455, 653
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4V	TGCA	5 cut(s)	314, 351, 368, 383, 674
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 45, 164, 170, 476
HpyF3I	CTNAG	2 cut(s)	471, 503
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	4 cut(s)	173, 523, 671, 681
HspAI	GCGC	1 cut(s)	86
KasI	GGCGCC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	220, 562
Lsp1109I	GCAGC	4 cut(s)	151, 279, 346, 658
LweI	GCATC	1 cut(s)	547
MaeIII	GTNAC	2 cut(s)	140, 307
MboII	GAAGA	2 cut(s)	63, 231
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	6 cut(s)	4, 401, 513, 542, 590, 707
Mly113I	GGCGCC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	6 cut(s)	175, 277, 417, 498, 545, 694
MspA1I	CMGCKG	2 cut(s)	270, 337
MspI	CCGG	2 cut(s)	63, 83
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	5 cut(s)	22, 45, 164, 170, 476
NarI	GGCGCC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	173, 523, 671, 681
NlaIV	GGNNCC	4 cut(s)	87, 222, 276, 396
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	3 cut(s)	523, 671, 681
PciI	ACATGT	2 cut(s)	519, 677
PkrI	GCNGC	5 cut(s)	24, 166, 269, 336, 673
PluTI	GGCGCC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	464
PscI	ACATGT	2 cut(s)	519, 677
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	4 cut(s)	87, 222, 276, 396
PspPI	GGNCC	2 cut(s)	259, 464
PspPPI	RGGWCCY	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	270
RsaI	GTAC	2 cut(s)	627, 636
RsaNI	GTAC	2 cut(s)	626, 635
SatI	GCNGC	5 cut(s)	23, 165, 268, 335, 672
Sau96I	GGNCC	2 cut(s)	259, 464
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	547
SfoI	GGCGCC	1 cut(s)	87
SinI	GGWCC	2 cut(s)	259, 464
Sse9I	AATT	6 cut(s)	4, 401, 513, 542, 590, 707
SsiI	CCGC	6 cut(s)	22, 37, 257, 337, 344, 560
SspDI	GGCGCC	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	630
TaqI	TCGA	2 cut(s)	586, 662
TasI	AATT	6 cut(s)	4, 401, 513, 542, 590, 707
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	1 cut(s)	25
TscAI	CASTG	3 cut(s)	138, 316, 635
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	4 cut(s)	164, 267, 334, 671
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	17, 32, 63, 341
TspRI	CASTG	3 cut(s)	138, 316, 635
VpaK11BI	GGWCC	2 cut(s)	259, 464
XapI	RAATTY	2 cut(s)	401, 542
XceI	RCATGY	3 cut(s)	523, 671, 681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.