Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010347

Physical Location & Seq

Genomic Coordinates Forward (+)

4713433 .. 4715407

Gene Structure 1975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGTGAAGCAAGCAGACAACAAAGGGCATGGAACAGAGAAATGACGGTTACGACAAATCTTTCTCTAGACATAGATAAATACCCGAGAGATCTGTTACGAGGTTTCATGTCTGAAAACGGCGGTGGAAGAGTCTTTCACGGCGGAGAAACAAACTGCGATGATGAGAGTACGATTGAGCTCAATCTTGGTTTGTCTTTAGGTGGTAGATTCGGAGTAGACAAGACTCCGAGGAAGCTGAAACGATCTTCTTCTGTTTTGGACACTGTACCATTCAACGATTCAACTGTGGCTGAGCCTGAGAATTACACGGTGGGTTTAGAGAGAACGACGTCGTTACCGGCGGAGATGGAAGAGGAATGGAGGAAAAGGAAAGAGATGCAATCGCTTAGGAGAATGGAAGCTAAGAGAAGGAGATGTGAGAAACAGAGTTTCAGAGTTGGGAATTCTGATGACCAAACGGTGTCGTTTGAGAATGAGAGATGGGTTACTGCGAGTAAAAGTGGCTTCTTGCAGAGACATTTGGTTTCTTCTAATAGACAAGTCTGTGGTGTTGATTCCGATGGAGGAGGAGCAACGGGAGGAGGTAGTTCATCGAGCTTGTCGGAGCTAGACAACAAAAATCAGCAAGGATCATCAAACAGCTGCAATGATGAAAGAAGCCCGAAAATCGTGGCAGGATGTTCATCGAACAGCGGAAGCCAGGGAACAGAGAGACCGAGTGTGACTAGAGCCAACAAAGTGAATGAGAATGAGAATGAAAAAAGAGTGAGAAGTGAAGACTCGGTGGATAGGAAAGGAAAAGGGATGGCTACGTCTACTGGTTTGGTTGATATGCCTTGTGTGTTTACTAAAGGGGACGGGCCAAACGGAAGACGGGTTGATGGGATTCTGTACAAGTATGGAAAAGGAGAGGAAGTGAGGATAATGTGCATTTGCCATGGTAGTTTCTTGACACCAGCTGAGTTTGTTAAACATGGTGGTGGTGGAGATGTGGATCGTCCTCTTCGGCATATCGTTGTCAACACCTCTTCTTCGACCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

348

Amino Acids

38.21

Weight (kDa)

8.08

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EAR	PF07897	54 - 88	1.1e-15	Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP	PF16136	107 - 143	2e-21	Putative nuclear localisation signal in Ninja/AFP proteins
TDBD	PF16135	308 - 341	5.8e-07	Tify domain binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13740
fragaria_vesca	FvH4_4g29910 FvH4_4g29910
malus_domestica	MD13G1061900.v1.1 MD16G1060400.v1.1
prunus_persica	Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1
pyrus_communis	pycom13g05440 pycom16g05260
rosa_chinensis	RchiOBHm_Chr4g0438171
rosa_laevigata	RLG00000006382
rosa_multiflora	Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379310
rosa_rugosa	Rorug04G0308200
rosa_samantha	Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800
rosa_wichuraiana	Rw0G006360 Rw0G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	335
AccI	GTMKAC	2 cut(s)	219, 818
AciI	CCGC	4 cut(s)	123, 144, 344, 696
AclWI	GGATC	2 cut(s)	640, 1005
AcsI	RAATTY	1 cut(s)	445
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	172, 270, 896
AgsI	TTSAA	2 cut(s)	277, 285
AjnI	CCWGG	1 cut(s)	702
AluBI	AGCT	7 cut(s)	181, 238, 404, 600, 610, 645, 962
AluI	AGCT	7 cut(s)	181, 238, 404, 600, 610, 645, 962
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	511, 709
AlwI	GGATC	2 cut(s)	640, 1005
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	863
ApeKI	GCWGC	1 cut(s)	645
ApoI	RAATTY	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	863
AsuHPI	GGTGA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	786, 880
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	5 cut(s)	343, 477, 557, 802, 878
BceAI	ACGGC	2 cut(s)	136, 157
BciT130I	CCWGG	1 cut(s)	704
BcoDI	GTCTC	2 cut(s)	511, 709
BfaI	CTAG	3 cut(s)	68, 611, 729
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	1 cut(s)	646
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	647
Bme1390I	CCNGG	1 cut(s)	704
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	863
BmrFI	CCNGG	1 cut(s)	704
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	786, 880
Bpu10I	CCTNAGC	1 cut(s)	389
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaBI	GATNNNNATC	2 cut(s)	685, 996
BsaHI	GRCGYC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	3 cut(s)	230, 703, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	903, 933
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	826
Bse3DI	GCAATG	1 cut(s)	655
Bse8I	GATNNNNATC	2 cut(s)	685, 996
BseBI	CCWGG	1 cut(s)	704
BseDI	CCNNGG	3 cut(s)	230, 703, 940
BseGI	GGATG	2 cut(s)	686, 813
BseJI	GATNNNNATC	2 cut(s)	685, 996
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	3 cut(s)	285, 291, 954
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	3 cut(s)	582, 585, 597
BseXI	GCAGC	1 cut(s)	632
BshFI	GGCC	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	872
BsmAI	GTCTC	2 cut(s)	511, 709
BsmFI	GGGAC	1 cut(s)	872
BsnI	GGCC	1 cut(s)	865
Bso31I	GGTCTC	1 cut(s)	709
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	4 cut(s)	91, 245, 632, 997
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	940
BspACI	CCGC	4 cut(s)	123, 144, 344, 696
BspANI	GGCC	1 cut(s)	865
BspCNI	CTCAG	3 cut(s)	286, 292, 955
BspPI	GGATC	2 cut(s)	640, 1005
BspTNI	GGTCTC	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	655
BsrFI	RCCGGY	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	894
BsrI	ACTGG	1 cut(s)	826
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	3 cut(s)	230, 703, 940
BssMI	GATC	4 cut(s)	91, 245, 632, 997
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	940
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	5 cut(s)	49, 268, 289, 313, 463
Bst6I	CTCTTC	4 cut(s)	124, 348, 1011, 1036
BstACI	GRCGYC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	894
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	5 cut(s)	294, 300, 389, 405, 963
BstDSI	CCRYGG	1 cut(s)	940
BstF5I	GGATG	2 cut(s)	686, 813
BstKTI	GATC	4 cut(s)	94, 248, 635, 1000
BstMAI	GTCTC	2 cut(s)	511, 709
BstMBI	GATC	4 cut(s)	91, 245, 632, 997
BstNI	CCWGG	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	702
BstV1I	GCAGC	1 cut(s)	632
BstV2I	GAAGAC	2 cut(s)	786, 880
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	865
BtgI	CCRYGG	1 cut(s)	940
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	686, 813
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	863
Csp6I	GTAC	3 cut(s)	171, 269, 895
CviAII	CATG	4 cut(s)	30, 109, 941, 977
CviQI	GTAC	3 cut(s)	171, 269, 895
DdeI	CTNAG	5 cut(s)	294, 300, 389, 405, 963
DpnI	GATC	4 cut(s)	93, 247, 634, 999
DpnII	GATC	4 cut(s)	91, 245, 632, 997
Eam1104I	CTCTTC	4 cut(s)	124, 348, 1011, 1036
EarI	CTCTTC	4 cut(s)	124, 348, 1011, 1036
EciI	GGCGGA	2 cut(s)	159, 359
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	940
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	709
Eco53kI	GAGCTC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	702
EcoT14I	CCWWGG	1 cut(s)	940
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	940
FaeI	CATG	4 cut(s)	33, 112, 944, 980
FaiI	YATR	8 cut(s)	31, 74, 110, 836, 903, 942, 978, 1014
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	4 cut(s)	29, 108, 940, 976
FblI	GTMKAC	2 cut(s)	219, 818
Fnu4HI	GCNGC	1 cut(s)	646
FokI	GGATG	2 cut(s)	693, 820
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	646
FspBI	CTAG	3 cut(s)	68, 611, 729
GluI	GCNGC	1 cut(s)	646
HaeIII	GGCC	1 cut(s)	865
HapII	CCGG	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	33, 112, 944, 980
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HinfI	GANTC	7 cut(s)	132, 210, 226, 281, 557, 782, 889
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	4 cut(s)	220, 819, 849, 1024
Hpy188I	TCNGA	7 cut(s)	115, 215, 231, 437, 451, 562, 607
Hpy188III	TCNNGA	2 cut(s)	68, 952
Hpy8I	GTNNAC	4 cut(s)	220, 819, 849, 1024
Hpy99I	CGWCG	2 cut(s)	334, 337
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	5 cut(s)	49, 268, 289, 313, 463
HpyCH4IV	ACGT	2 cut(s)	332, 815
HpyCH4V	TGCA	4 cut(s)	382, 514, 648, 933
HpyF3I	CTNAG	5 cut(s)	294, 300, 389, 405, 963
HpySE526I	ACGT	2 cut(s)	332, 815
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	33, 112, 944, 980
Kzo9I	GATC	4 cut(s)	91, 245, 632, 997
LmnI	GCTCC	2 cut(s)	572, 607
LpnPI	CCDG	7 cut(s)	312, 354, 663, 689, 716, 807, 972
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	3 cut(s)	68, 611, 729
MaeII	ACGT	2 cut(s)	332, 815
MaeIII	GTNAC	5 cut(s)	49, 96, 336, 487, 724
MalI	GATC	4 cut(s)	93, 247, 634, 999
MboI	GATC	4 cut(s)	91, 245, 632, 997
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	2 cut(s)	304, 445
MlyI	GAGTC	3 cut(s)	141, 220, 776
MmeI	TCCRAC	1 cut(s)	585
MseI	TTAA	2 cut(s)	972, 1045
MslI	CAYNNNNRTG	1 cut(s)	981
MspA1I	CMGCKG	3 cut(s)	645, 696, 962
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	940
NdeII	GATC	4 cut(s)	91, 245, 632, 997
NlaIII	CATG	4 cut(s)	33, 112, 944, 980
NmuCI	GTSAC	1 cut(s)	724
PfeI	GAWTC	4 cut(s)	210, 281, 557, 889
PkrI	GCNGC	1 cut(s)	647
PleI	GAGTC	3 cut(s)	140, 220, 776
PpsI	GAGTC	3 cut(s)	140, 220, 776
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	702
PspGI	CCWGG	1 cut(s)	702
PspPI	GGNCC	1 cut(s)	863
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	2 cut(s)	645, 962
RsaI	GTAC	3 cut(s)	172, 270, 896
RsaNI	GTAC	3 cut(s)	171, 269, 895
RseI	CAYNNNNRTG	1 cut(s)	981
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	972, 1045
SatI	GCNGC	1 cut(s)	646
Sau3AI	GATC	4 cut(s)	91, 245, 632, 997
Sau96I	GGNCC	1 cut(s)	863
SchI	GAGTC	3 cut(s)	141, 220, 776
ScrFI	CCNGG	1 cut(s)	704
SduI	GDGCHC	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	981
Sse9I	AATT	2 cut(s)	304, 445
SsiI	CCGC	4 cut(s)	123, 144, 344, 696
SspMI	CTAG	3 cut(s)	68, 611, 729
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	702
StyI	CCWWGG	1 cut(s)	940
TaaI	ACNGT	5 cut(s)	49, 268, 289, 313, 463
TaiI	ACGT	2 cut(s)	335, 818
TaqI	TCGA	3 cut(s)	596, 689, 1037
TaqII	GACCGA	1 cut(s)	733
TasI	AATT	2 cut(s)	304, 445
TatI	WGTACW	1 cut(s)	894
TfiI	GAWTC	4 cut(s)	210, 281, 557, 889
Tru1I	TTAA	2 cut(s)	972, 1045
Tru9I	TTAA	2 cut(s)	972, 1045
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	5 cut(s)	97, 582, 669, 675, 774
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	1 cut(s)	271
XapI	RAATTY	1 cut(s)	445
XbaI	TCTAGA	1 cut(s)	67
XmiI	GTMKAC	2 cut(s)	219, 818
XspI	CTAG	3 cut(s)	68, 611, 729
ZraI	GACGTC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.