FvH4_4g29910

Ninja-family protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
29813284 .. 29816604
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29910.t2

Sequence Viewer

Length: 1071 bp
ATGGGGGAGGCCAGCGAGAGAAGGAGGCGAGCAGTGGAGAATCTGTCGTCGTTTGATAAGTGCCCGAGAGATCTGCTGCAGAGACTAATGTGCAGCAACGACACGTCGCAGTTGAAGTACGAGGAGGTGACAAACGAGGAGGAGGAGCTGGAGCTTAATCTAGGCCTGTCTTTGGGCGGCAGATTCGGGGTTGACAAGACCAAGCTAGTCCGATCTTCCTCGATTGCGGTGACCATGCCGTTTTTTCGGGAAGAGAGCAACGACGACTCTTCCGCTCCGGCTCCGTTGGCGTCGTACGCGGGGCTGATGAGGACGTCGTCGCTGCCGACGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAGCTCCAGACTCTGCGGCGGTTGGCGGCGAAGCGGAGGAGGTCGGAGAAGCAGAGGAATAGCACGAGCTCGAACAGTAAGGAAGAAGAGGAGGTGGGCCCCAATTCCGGGGTGAGGACTAACCCGTTTTGGGCGGCGATTACGGCGGCGAGACAAGCGGCGAAGGGTAAAAATGACATTTTGGGTGGGTTTCAGGGGTTTGGGCTGCAGCCTAGTTCTCAGGGCTCGGTGGAGTCACAAGGTGGAAGCTCGTCCGGGTTGTCGGAAATGGAGAGTAAACCTCTTCAAGGATCCAGCAGCTGTGGTGAAGCAAGAAGCCCTGCTAGTAACCAGGATCAACAAAGCAATCAGGGCACCACCCTTCGTTCTTTGGGGTCATTGACGCCTGAGCATGCCAACAGAATTTCCAGGGCAGTCATGGAAAGCATGCGCAAGAAGCCCCCTATTCCTTCTGAAGATAAAGGAAGGGAAAGTAGGATGAACCACATGGAGGACATGCCTTGTGTTTTCACAAAAGGAGACGGTCCTAATGGTAGAAAAATAGAAGGAATCCTATACCGATATGCGAAGGGAGAGGAAGTAAGAATAATGTGTGTATGCCATGGCACCTTTCTTTCTCCGGCAGAGTTTGTGAAGCACGCAGGAGGAGGTGATGTCACTAACCCACTTCGGCACATAGTTGTAAACCCGGCTGCAACTTCCTTTTTGTGA

Protein Analysis

357

Amino Acids

39.06

Weight (kDa)

8.47

Isoelectric Point (pI)

72.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 45 - 77 2.1e-14 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 102 - 138 3.5e-21 Putative nuclear localisation signal in Ninja/AFP proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 317
Acc16I TGCGCA 1 cut(s) 791
AccB1I GGYRCC 2 cut(s) 713, 965
AccBSI CCGCTC 1 cut(s) 275
AccII CGCG 1 cut(s) 299
AclWI GGATC 3 cut(s) 645, 658, 702
AcsI RAATTY 1 cut(s) 762
AcuI CTGAAG 1 cut(s) 834
AcyI GRCGYC 3 cut(s) 290, 314, 743
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 2 cut(s) 119, 296
AfiI CCNNNNNNNGG 7 cut(s) 172, 467, 468, 474, 490, 647, 850
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 2 cut(s) 115, 647
AjiI CACGTC 1 cut(s) 105
AjnI CCWGG 2 cut(s) 690, 767
AluBI AGCT 7 cut(s) 148, 154, 205, 364, 429, 609, 660
AluI AGCT 7 cut(s) 148, 154, 205, 364, 429, 609, 660
Alw21I GWGCWC 2 cut(s) 366, 431
Alw26I GTCTC 4 cut(s) 76, 326, 505, 873
AlwI GGATC 3 cut(s) 645, 658, 702
AlwNI CAGNNNCTG 2 cut(s) 373, 660
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 3 cut(s) 9, 163, 457
ApaI GGGCCC 1 cut(s) 461
ApeKI GCWGC 7 cut(s) 76, 93, 322, 565, 568, 657, 1052
ApoI RAATTY 1 cut(s) 762
AspLEI GCGC 1 cut(s) 792
AspS9I GGNCC 3 cut(s) 457, 458, 884
AsuC2I CCSGG 3 cut(s) 469, 616, 1049
AsuHPI GGTGA 5 cut(s) 139, 241, 484, 677, 1022
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 884
BaeGI GKGCMC 3 cut(s) 65, 461, 716
BamHI GGATCC 1 cut(s) 650
BanI GGYRCC 2 cut(s) 713, 965
BanII GRGCYC 4 cut(s) 366, 431, 461, 587
BauI CACGAG 1 cut(s) 424
Bbv12I GWGCWC 2 cut(s) 366, 431
BbvI GCAGC 7 cut(s) 63, 105, 309, 552, 580, 669, 1039
BceAI ACGGC 2 cut(s) 223, 519
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 2 cut(s) 692, 769
BcnI CCSGG 3 cut(s) 469, 616, 1049
BcoDI GTCTC 4 cut(s) 76, 326, 505, 873
BfaI CTAG 4 cut(s) 161, 206, 573, 684
BfmI CTRYAG 2 cut(s) 77, 566
BglII AGATCT 1 cut(s) 70
Bme1390I CCNGG 5 cut(s) 469, 616, 692, 769, 1049
Bme18I GGWCC 1 cut(s) 884
BmeT110I CYCGRG 1 cut(s) 64
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 3 cut(s) 457, 458, 884
BmiI GGNNCC 6 cut(s) 282, 459, 460, 652, 715, 967
BmrFI CCNGG 5 cut(s) 469, 616, 692, 769, 1049
BplI GAGNNNNNCTC 2 cut(s) 625, 657
BpmI CTGGAG 2 cut(s) 170, 350
Bpu10I CCTNAGC 1 cut(s) 747
BpuMI CCSGG 3 cut(s) 469, 616, 1049
BsaHI GRCGYC 3 cut(s) 290, 314, 743
BsaJI CCNNGG 3 cut(s) 468, 768, 961
BsaXI ACNNNNNCTCC 8 cut(s) 29, 59, 329, 359, 924, 954, 999, 1029
Bsc4I CCNNNNNNNGG 7 cut(s) 172, 467, 468, 474, 490, 647, 850
BseBI CCWGG 2 cut(s) 692, 769
BseDI CCNNGG 3 cut(s) 468, 768, 961
BseGI GGATG 1 cut(s) 843
BseLI CCNNNNNNNGG 7 cut(s) 172, 467, 468, 474, 490, 647, 850
BseMII CTCAG 2 cut(s) 593, 738
BseRI GAGGAG 9 cut(s) 137, 152, 155, 158, 353, 356, 412, 464, 1020
BseSI GKGCMC 3 cut(s) 65, 461, 716
BseXI GCAGC 7 cut(s) 63, 105, 309, 552, 580, 669, 1039
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 3 cut(s) 11, 165, 459
BshNI GGYRCC 2 cut(s) 713, 965
BsiHKAI GWGCWC 2 cut(s) 366, 431
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 5 cut(s) 278, 468, 615, 980, 1049
BsiWI CGTACG 1 cut(s) 294
BslI CCNNNNNNNGG 7 cut(s) 172, 467, 468, 474, 490, 647, 850
BsmAI GTCTC 4 cut(s) 76, 326, 505, 873
BsmBI CGTCTC 2 cut(s) 326, 873
BsnI GGCC 3 cut(s) 11, 165, 459
BsoBI CYCGRG 1 cut(s) 64
Bsp120I GGGCCC 1 cut(s) 457
Bsp1286I GDGCHC 6 cut(s) 65, 366, 431, 461, 587, 716
Bsp143I GATC 4 cut(s) 70, 212, 650, 694
Bsp19I CCATGG 1 cut(s) 961
BspANI GGCC 3 cut(s) 11, 165, 459
BspCNI CTCAG 2 cut(s) 592, 739
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 6 cut(s) 282, 459, 460, 652, 715, 967
BspMAI CTGCAG 2 cut(s) 81, 570
BspPI GGATC 3 cut(s) 645, 658, 702
BspT107I GGYRCC 2 cut(s) 713, 965
BsrBI CCGCTC 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 468, 768, 961
BssMI GATC 4 cut(s) 70, 212, 650, 694
BssNI GRCGYC 3 cut(s) 290, 314, 743
BssSI CACGAG 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 961
Bst2BI CACGAG 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 692, 769
Bst4CI ACNGT 2 cut(s) 437, 884
Bst6I CTCTTC 5 cut(s) 246, 274, 347, 441, 648
BstACI GRCGYC 3 cut(s) 290, 314, 743
BstC8I GCNNGC 5 cut(s) 13, 30, 753, 788, 999
BstDEI CTNAG 2 cut(s) 579, 747
BstDSI CCRYGG 1 cut(s) 961
BstEII GGTNACC 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 843
BstFNI CGCG 1 cut(s) 299
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 4 cut(s) 73, 215, 653, 697
BstMAI GTCTC 4 cut(s) 76, 326, 505, 873
BstMBI GATC 4 cut(s) 70, 212, 650, 694
BstMWI GCNNNNNNNGC 6 cut(s) 287, 296, 503, 515, 711, 796
BstNI CCWGG 2 cut(s) 692, 769
BstNSI RCATGY 3 cut(s) 755, 790, 859
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 5 cut(s) 467, 614, 690, 767, 1047
BstSFI CTRYAG 2 cut(s) 77, 566
BstSLI GKGCMC 3 cut(s) 65, 461, 716
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 7 cut(s) 63, 105, 309, 552, 580, 669, 1039
BstX2I RGATCY 2 cut(s) 70, 650
BstYI RGATCY 2 cut(s) 70, 650
BsuRI GGCC 3 cut(s) 11, 165, 459
BtgI CCRYGG 1 cut(s) 961
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 843
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 5 cut(s) 13, 30, 753, 788, 999
CaiI CAGNNNCTG 2 cut(s) 373, 660
CfoI GCGC 1 cut(s) 792
Cfr13I GGNCC 3 cut(s) 457, 458, 884
CseI GACGC 2 cut(s) 279, 751
Csp6I GTAC 2 cut(s) 118, 295
CviAII CATG 7 cut(s) 235, 752, 778, 787, 847, 856, 962
CviQI GTAC 2 cut(s) 118, 295
DdeI CTNAG 2 cut(s) 579, 747
DpnI GATC 4 cut(s) 72, 214, 652, 696
DpnII GATC 4 cut(s) 70, 212, 650, 694
DraIII CACNNNGTG 1 cut(s) 602
Eam1104I CTCTTC 5 cut(s) 246, 274, 347, 441, 648
EarI CTCTTC 5 cut(s) 246, 274, 347, 441, 648
Ecl136II GAGCTC 2 cut(s) 364, 429
Eco130I CCWWGG 1 cut(s) 961
Eco147I AGGCCT 1 cut(s) 165
Eco24I GRGCYC 4 cut(s) 366, 431, 461, 587
Eco47I GGWCC 1 cut(s) 884
Eco53kI GAGCTC 2 cut(s) 364, 429
Eco57I CTGAAG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 229
EcoICRI GAGCTC 2 cut(s) 364, 429
EcoNI CCTNNNNNAGG 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 690, 767
EcoT14I CCWWGG 1 cut(s) 961
EcoT38I GRGCYC 4 cut(s) 366, 431, 461, 587
ErhI CCWWGG 1 cut(s) 961
Esp3I CGTCTC 2 cut(s) 326, 873
FaeI CATG 7 cut(s) 238, 755, 781, 790, 850, 859, 965
FatI CATG 7 cut(s) 234, 751, 777, 786, 846, 855, 961
FauI CCCGC 1 cut(s) 292
FokI GGATG 1 cut(s) 850
FriOI GRGCYC 4 cut(s) 366, 431, 461, 587
FspBI CTAG 4 cut(s) 161, 206, 573, 684
FspI TGCGCA 1 cut(s) 791
GlaI GCGC 1 cut(s) 791
GsuI CTGGAG 2 cut(s) 170, 350
HaeIII GGCC 3 cut(s) 11, 165, 459
HapII CCGG 5 cut(s) 278, 468, 615, 980, 1049
HgaI GACGC 2 cut(s) 279, 751
HhaI GCGC 1 cut(s) 792
Hin1I GRCGYC 3 cut(s) 290, 314, 743
Hin1II CATG 7 cut(s) 238, 755, 781, 790, 850, 859, 965
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 6 cut(s) 40, 183, 266, 370, 593, 909
HpaII CCGG 5 cut(s) 278, 468, 615, 980, 1049
HphI GGTGA 5 cut(s) 139, 241, 484, 677, 1022
Hpy166II GTNNAC 3 cut(s) 193, 638, 1045
Hpy188I TCNGA 4 cut(s) 212, 406, 625, 814
Hpy188III TCNNGA 2 cut(s) 248, 367
Hpy8I GTNNAC 3 cut(s) 193, 638, 1045
Hpy99I CGWCG 7 cut(s) 52, 109, 266, 295, 319, 322, 331
HpyAV CCTTC 8 cut(s) 15, 352, 517, 731, 819, 819, 899, 922
HpyCH4III ACNGT 2 cut(s) 437, 884
HpyCH4IV ACGT 2 cut(s) 104, 314
HpyCH4V TGCA 4 cut(s) 79, 93, 568, 1055
HpyF10VI GCNNNNNNNGC 6 cut(s) 287, 296, 503, 515, 711, 796
HpyF3I CTNAG 2 cut(s) 579, 747
HpySE526I ACGT 2 cut(s) 104, 314
Hsp92I GRCGYC 3 cut(s) 290, 314, 743
Hsp92II CATG 7 cut(s) 238, 755, 781, 790, 850, 859, 965
HspAI GCGC 1 cut(s) 790
Kzo9I GATC 4 cut(s) 70, 212, 650, 694
LmnI GCTCC 6 cut(s) 145, 151, 280, 286, 361, 369
Lsp1109I GCAGC 7 cut(s) 63, 105, 309, 552, 580, 669, 1039
MaeI CTAG 4 cut(s) 161, 206, 573, 684
MaeII ACGT 2 cut(s) 104, 314
MaeIII GTNAC 5 cut(s) 127, 229, 594, 686, 1015
MalI GATC 4 cut(s) 72, 214, 652, 696
MbiI CCGCTC 1 cut(s) 275
MboI GATC 4 cut(s) 70, 212, 650, 694
MboII GAAGA 8 cut(s) 207, 261, 263, 364, 455, 458, 635, 827
MflI RGATCY 2 cut(s) 70, 650
MhlI GDGCHC 6 cut(s) 65, 366, 431, 461, 587, 716
MluCI AATT 2 cut(s) 463, 762
MlyI GAGTC 3 cut(s) 260, 364, 602
MmeI TCCRAC 2 cut(s) 384, 603
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 660
MspI CCGG 5 cut(s) 278, 468, 615, 980, 1049
MspR9I CCNGG 5 cut(s) 469, 616, 692, 769, 1049
MvaI CCWGG 2 cut(s) 692, 769
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 6 cut(s) 287, 296, 503, 515, 711, 796
NciI CCSGG 3 cut(s) 469, 616, 1049
NcoI CCATGG 1 cut(s) 961
NdeII GATC 4 cut(s) 70, 212, 650, 694
NlaIII CATG 7 cut(s) 238, 755, 781, 790, 850, 859, 965
NlaIV GGNNCC 6 cut(s) 282, 459, 460, 652, 715, 967
NmuCI GTSAC 4 cut(s) 127, 229, 594, 1015
NsbI TGCGCA 1 cut(s) 791
NspI RCATGY 3 cut(s) 755, 790, 859
PaeI GCATGC 2 cut(s) 755, 790
PceI AGGCCT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PfeI GAWTC 3 cut(s) 40, 183, 909
Pfl23II CGTACG 1 cut(s) 294
PflFI GACNNNGTC 1 cut(s) 316
PleI GAGTC 3 cut(s) 260, 364, 601
PpsI GAGTC 3 cut(s) 260, 364, 601
Psp124BI GAGCTC 2 cut(s) 366, 431
Psp6I CCWGG 2 cut(s) 690, 767
PspEI GGTNACC 1 cut(s) 229
PspGI CCWGG 2 cut(s) 690, 767
PspLI CGTACG 1 cut(s) 294
PspN4I GGNNCC 6 cut(s) 282, 459, 460, 652, 715, 967
PspOMI GGGCCC 1 cut(s) 457
PspPI GGNCC 3 cut(s) 457, 458, 884
PstI CTGCAG 2 cut(s) 81, 570
PstNI CAGNNNCTG 2 cut(s) 373, 660
PsuI RGATCY 2 cut(s) 70, 650
PsyI GACNNNGTC 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 660
RsaI GTAC 2 cut(s) 119, 296
RsaNI GTAC 2 cut(s) 118, 295
SacI GAGCTC 2 cut(s) 366, 431
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 4 cut(s) 70, 212, 650, 694
Sau96I GGNCC 3 cut(s) 457, 458, 884
SchI GAGTC 3 cut(s) 260, 364, 602
ScrFI CCNGG 5 cut(s) 469, 616, 692, 769, 1049
SduI GDGCHC 6 cut(s) 65, 366, 431, 461, 587, 716
SfcI CTRYAG 2 cut(s) 77, 566
SinI GGWCC 1 cut(s) 884
SphI GCATGC 2 cut(s) 755, 790
Sse9I AATT 2 cut(s) 463, 762
SseBI AGGCCT 1 cut(s) 165
SspMI CTAG 4 cut(s) 161, 206, 573, 684
SstI GAGCTC 2 cut(s) 366, 431
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 5 cut(s) 467, 614, 690, 767, 1047
StyI CCWWGG 1 cut(s) 961
TaaI ACNGT 2 cut(s) 437, 884
TaiI ACGT 2 cut(s) 107, 317
TaqI TCGA 2 cut(s) 221, 431
TasI AATT 2 cut(s) 463, 762
TauI GCSGC 6 cut(s) 180, 379, 389, 497, 509, 521
TfiI GAWTC 3 cut(s) 40, 183, 909
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 4 cut(s) 127, 229, 594, 1015
TseI GCWGC 7 cut(s) 76, 93, 322, 565, 568, 657, 1052
Tsp45I GTSAC 4 cut(s) 127, 229, 594, 1015
TspDTI ATGAA 1 cut(s) 854
TspGWI ACGGA 3 cut(s) 273, 344, 350
TspRI CASTG 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 884
XagI CCTNNNNNAGG 1 cut(s) 645
XapI RAATTY 1 cut(s) 762
XceI RCATGY 3 cut(s) 755, 790, 859
XcmI CCANNNNNNNNNTGG 1 cut(s) 775
XspI CTAG 4 cut(s) 161, 206, 573, 684
ZraI GACGTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.