Ninja-family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13740 |
| fragaria_vesca | FvH4_4g29910 FvH4_4g29910 |
| malus_domestica | MD13G1061900.v1.1 MD16G1060400.v1.1 |
| prunus_persica | Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1 |
| pyrus_communis | pycom13g05440 pycom16g05260 |
| rosa_chinensis | RchiOBHm_Chr4g0438171 |
| rosa_laevigata | RLG00000006382 |
| rosa_multiflora | Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00379310 |
| rosa_rugosa | Rorug04G0308200 |
| rosa_samantha | Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800 |
| rosa_wichuraiana | Rw0G006360 Rw0G016300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 317 |
| Acc16I | TGCGCA | 1 cut(s) | 791 |
| AccB1I | GGYRCC | 2 cut(s) | 713, 965 |
| AccBSI | CCGCTC | 1 cut(s) | 275 |
| AccII | CGCG | 1 cut(s) | 299 |
| AclWI | GGATC | 3 cut(s) | 645, 658, 702 |
| AcsI | RAATTY | 1 cut(s) | 762 |
| AcuI | CTGAAG | 1 cut(s) | 834 |
| AcyI | GRCGYC | 3 cut(s) | 290, 314, 743 |
| AdeI | CACNNNGTG | 1 cut(s) | 602 |
| AfaI | GTAC | 2 cut(s) | 119, 296 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 172, 467, 468, 474, 490, 647, 850 |
| AflIII | ACRYGT | 1 cut(s) | 102 |
| AgsI | TTSAA | 2 cut(s) | 115, 647 |
| AjiI | CACGTC | 1 cut(s) | 105 |
| AjnI | CCWGG | 2 cut(s) | 690, 767 |
| AluBI | AGCT | 7 cut(s) | 148, 154, 205, 364, 429, 609, 660 |
| AluI | AGCT | 7 cut(s) | 148, 154, 205, 364, 429, 609, 660 |
| Alw21I | GWGCWC | 2 cut(s) | 366, 431 |
| Alw26I | GTCTC | 4 cut(s) | 76, 326, 505, 873 |
| AlwI | GGATC | 3 cut(s) | 645, 658, 702 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 373, 660 |
| Ama87I | CYCGRG | 1 cut(s) | 64 |
| AoxI | GGCC | 3 cut(s) | 9, 163, 457 |
| ApaI | GGGCCC | 1 cut(s) | 461 |
| ApeKI | GCWGC | 7 cut(s) | 76, 93, 322, 565, 568, 657, 1052 |
| ApoI | RAATTY | 1 cut(s) | 762 |
| AspLEI | GCGC | 1 cut(s) | 792 |
| AspS9I | GGNCC | 3 cut(s) | 457, 458, 884 |
| AsuC2I | CCSGG | 3 cut(s) | 469, 616, 1049 |
| AsuHPI | GGTGA | 5 cut(s) | 139, 241, 484, 677, 1022 |
| AvaI | CYCGRG | 1 cut(s) | 64 |
| AvaII | GGWCC | 1 cut(s) | 884 |
| BaeGI | GKGCMC | 3 cut(s) | 65, 461, 716 |
| BamHI | GGATCC | 1 cut(s) | 650 |
| BanI | GGYRCC | 2 cut(s) | 713, 965 |
| BanII | GRGCYC | 4 cut(s) | 366, 431, 461, 587 |
| BauI | CACGAG | 1 cut(s) | 424 |
| Bbv12I | GWGCWC | 2 cut(s) | 366, 431 |
| BbvI | GCAGC | 7 cut(s) | 63, 105, 309, 552, 580, 669, 1039 |
| BceAI | ACGGC | 2 cut(s) | 223, 519 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 55, 89 |
| BciT130I | CCWGG | 2 cut(s) | 692, 769 |
| BcnI | CCSGG | 3 cut(s) | 469, 616, 1049 |
| BcoDI | GTCTC | 4 cut(s) | 76, 326, 505, 873 |
| BfaI | CTAG | 4 cut(s) | 161, 206, 573, 684 |
| BfmI | CTRYAG | 2 cut(s) | 77, 566 |
| BglII | AGATCT | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 5 cut(s) | 469, 616, 692, 769, 1049 |
| Bme18I | GGWCC | 1 cut(s) | 884 |
| BmeT110I | CYCGRG | 1 cut(s) | 64 |
| BmgBI | CACGTC | 1 cut(s) | 105 |
| BmgT120I | GGNCC | 3 cut(s) | 457, 458, 884 |
| BmiI | GGNNCC | 6 cut(s) | 282, 459, 460, 652, 715, 967 |
| BmrFI | CCNGG | 5 cut(s) | 469, 616, 692, 769, 1049 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 625, 657 |
| BpmI | CTGGAG | 2 cut(s) | 170, 350 |
| Bpu10I | CCTNAGC | 1 cut(s) | 747 |
| BpuMI | CCSGG | 3 cut(s) | 469, 616, 1049 |
| BsaHI | GRCGYC | 3 cut(s) | 290, 314, 743 |
| BsaJI | CCNNGG | 3 cut(s) | 468, 768, 961 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 29, 59, 329, 359, 924, 954, 999, 1029 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 172, 467, 468, 474, 490, 647, 850 |
| BseBI | CCWGG | 2 cut(s) | 692, 769 |
| BseDI | CCNNGG | 3 cut(s) | 468, 768, 961 |
| BseGI | GGATG | 1 cut(s) | 843 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 172, 467, 468, 474, 490, 647, 850 |
| BseMII | CTCAG | 2 cut(s) | 593, 738 |
| BseRI | GAGGAG | 9 cut(s) | 137, 152, 155, 158, 353, 356, 412, 464, 1020 |
| BseSI | GKGCMC | 3 cut(s) | 65, 461, 716 |
| BseXI | GCAGC | 7 cut(s) | 63, 105, 309, 552, 580, 669, 1039 |
| BsgI | GTGCAG | 1 cut(s) | 112 |
| Bsh1236I | CGCG | 1 cut(s) | 299 |
| BshFI | GGCC | 3 cut(s) | 11, 165, 459 |
| BshNI | GGYRCC | 2 cut(s) | 713, 965 |
| BsiHKAI | GWGCWC | 2 cut(s) | 366, 431 |
| BsiHKCI | CYCGRG | 1 cut(s) | 64 |
| BsiSI | CCGG | 5 cut(s) | 278, 468, 615, 980, 1049 |
| BsiWI | CGTACG | 1 cut(s) | 294 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 172, 467, 468, 474, 490, 647, 850 |
| BsmAI | GTCTC | 4 cut(s) | 76, 326, 505, 873 |
| BsmBI | CGTCTC | 2 cut(s) | 326, 873 |
| BsnI | GGCC | 3 cut(s) | 11, 165, 459 |
| BsoBI | CYCGRG | 1 cut(s) | 64 |
| Bsp120I | GGGCCC | 1 cut(s) | 457 |
| Bsp1286I | GDGCHC | 6 cut(s) | 65, 366, 431, 461, 587, 716 |
| Bsp143I | GATC | 4 cut(s) | 70, 212, 650, 694 |
| Bsp19I | CCATGG | 1 cut(s) | 961 |
| BspANI | GGCC | 3 cut(s) | 11, 165, 459 |
| BspCNI | CTCAG | 2 cut(s) | 592, 739 |
| BspFNI | CGCG | 1 cut(s) | 299 |
| BspLI | GGNNCC | 6 cut(s) | 282, 459, 460, 652, 715, 967 |
| BspMAI | CTGCAG | 2 cut(s) | 81, 570 |
| BspPI | GGATC | 3 cut(s) | 645, 658, 702 |
| BspT107I | GGYRCC | 2 cut(s) | 713, 965 |
| BsrBI | CCGCTC | 1 cut(s) | 275 |
| BssECI | CCNNGG | 3 cut(s) | 468, 768, 961 |
| BssMI | GATC | 4 cut(s) | 70, 212, 650, 694 |
| BssNI | GRCGYC | 3 cut(s) | 290, 314, 743 |
| BssSI | CACGAG | 1 cut(s) | 424 |
| BssT1I | CCWWGG | 1 cut(s) | 961 |
| Bst2BI | CACGAG | 1 cut(s) | 424 |
| Bst2UI | CCWGG | 2 cut(s) | 692, 769 |
| Bst4CI | ACNGT | 2 cut(s) | 437, 884 |
| Bst6I | CTCTTC | 5 cut(s) | 246, 274, 347, 441, 648 |
| BstACI | GRCGYC | 3 cut(s) | 290, 314, 743 |
| BstC8I | GCNNGC | 5 cut(s) | 13, 30, 753, 788, 999 |
| BstDEI | CTNAG | 2 cut(s) | 579, 747 |
| BstDSI | CCRYGG | 1 cut(s) | 961 |
| BstEII | GGTNACC | 1 cut(s) | 229 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 645 |
| BstF5I | GGATG | 1 cut(s) | 843 |
| BstFNI | CGCG | 1 cut(s) | 299 |
| BstHHI | GCGC | 1 cut(s) | 792 |
| BstKTI | GATC | 4 cut(s) | 73, 215, 653, 697 |
| BstMAI | GTCTC | 4 cut(s) | 76, 326, 505, 873 |
| BstMBI | GATC | 4 cut(s) | 70, 212, 650, 694 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 287, 296, 503, 515, 711, 796 |
| BstNI | CCWGG | 2 cut(s) | 692, 769 |
| BstNSI | RCATGY | 3 cut(s) | 755, 790, 859 |
| BstPI | GGTNACC | 1 cut(s) | 229 |
| BstSCI | CCNGG | 5 cut(s) | 467, 614, 690, 767, 1047 |
| BstSFI | CTRYAG | 2 cut(s) | 77, 566 |
| BstSLI | GKGCMC | 3 cut(s) | 65, 461, 716 |
| BstUI | CGCG | 1 cut(s) | 299 |
| BstV1I | GCAGC | 7 cut(s) | 63, 105, 309, 552, 580, 669, 1039 |
| BstX2I | RGATCY | 2 cut(s) | 70, 650 |
| BstYI | RGATCY | 2 cut(s) | 70, 650 |
| BsuRI | GGCC | 3 cut(s) | 11, 165, 459 |
| BtgI | CCRYGG | 1 cut(s) | 961 |
| BtrI | CACGTC | 1 cut(s) | 105 |
| BtsCI | GGATG | 1 cut(s) | 843 |
| BtsI | GCAGTG | 1 cut(s) | 39 |
| BtsIMutI | CAGTG | 1 cut(s) | 39 |
| Cac8I | GCNNGC | 5 cut(s) | 13, 30, 753, 788, 999 |
| CaiI | CAGNNNCTG | 2 cut(s) | 373, 660 |
| CfoI | GCGC | 1 cut(s) | 792 |
| Cfr13I | GGNCC | 3 cut(s) | 457, 458, 884 |
| CseI | GACGC | 2 cut(s) | 279, 751 |
| Csp6I | GTAC | 2 cut(s) | 118, 295 |
| CviAII | CATG | 7 cut(s) | 235, 752, 778, 787, 847, 856, 962 |
| CviQI | GTAC | 2 cut(s) | 118, 295 |
| DdeI | CTNAG | 2 cut(s) | 579, 747 |
| DpnI | GATC | 4 cut(s) | 72, 214, 652, 696 |
| DpnII | GATC | 4 cut(s) | 70, 212, 650, 694 |
| DraIII | CACNNNGTG | 1 cut(s) | 602 |
| Eam1104I | CTCTTC | 5 cut(s) | 246, 274, 347, 441, 648 |
| EarI | CTCTTC | 5 cut(s) | 246, 274, 347, 441, 648 |
| Ecl136II | GAGCTC | 2 cut(s) | 364, 429 |
| Eco130I | CCWWGG | 1 cut(s) | 961 |
| Eco147I | AGGCCT | 1 cut(s) | 165 |
| Eco24I | GRGCYC | 4 cut(s) | 366, 431, 461, 587 |
| Eco47I | GGWCC | 1 cut(s) | 884 |
| Eco53kI | GAGCTC | 2 cut(s) | 364, 429 |
| Eco57I | CTGAAG | 1 cut(s) | 834 |
| Eco88I | CYCGRG | 1 cut(s) | 64 |
| Eco91I | GGTNACC | 1 cut(s) | 229 |
| EcoICRI | GAGCTC | 2 cut(s) | 364, 429 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 645 |
| EcoO109I | RGGNCCY | 1 cut(s) | 458 |
| EcoO65I | GGTNACC | 1 cut(s) | 229 |
| EcoRII | CCWGG | 2 cut(s) | 690, 767 |
| EcoT14I | CCWWGG | 1 cut(s) | 961 |
| EcoT38I | GRGCYC | 4 cut(s) | 366, 431, 461, 587 |
| ErhI | CCWWGG | 1 cut(s) | 961 |
| Esp3I | CGTCTC | 2 cut(s) | 326, 873 |
| FaeI | CATG | 7 cut(s) | 238, 755, 781, 790, 850, 859, 965 |
| FatI | CATG | 7 cut(s) | 234, 751, 777, 786, 846, 855, 961 |
| FauI | CCCGC | 1 cut(s) | 292 |
| FokI | GGATG | 1 cut(s) | 850 |
| FriOI | GRGCYC | 4 cut(s) | 366, 431, 461, 587 |
| FspBI | CTAG | 4 cut(s) | 161, 206, 573, 684 |
| FspI | TGCGCA | 1 cut(s) | 791 |
| GlaI | GCGC | 1 cut(s) | 791 |
| GsuI | CTGGAG | 2 cut(s) | 170, 350 |
| HaeIII | GGCC | 3 cut(s) | 11, 165, 459 |
| HapII | CCGG | 5 cut(s) | 278, 468, 615, 980, 1049 |
| HgaI | GACGC | 2 cut(s) | 279, 751 |
| HhaI | GCGC | 1 cut(s) | 792 |
| Hin1I | GRCGYC | 3 cut(s) | 290, 314, 743 |
| Hin1II | CATG | 7 cut(s) | 238, 755, 781, 790, 850, 859, 965 |
| Hin6I | GCGC | 1 cut(s) | 790 |
| HinP1I | GCGC | 1 cut(s) | 790 |
| HincII | GTYRAC | 1 cut(s) | 193 |
| HindII | GTYRAC | 1 cut(s) | 193 |
| HinfI | GANTC | 6 cut(s) | 40, 183, 266, 370, 593, 909 |
| HpaII | CCGG | 5 cut(s) | 278, 468, 615, 980, 1049 |
| HphI | GGTGA | 5 cut(s) | 139, 241, 484, 677, 1022 |
| Hpy166II | GTNNAC | 3 cut(s) | 193, 638, 1045 |
| Hpy188I | TCNGA | 4 cut(s) | 212, 406, 625, 814 |
| Hpy188III | TCNNGA | 2 cut(s) | 248, 367 |
| Hpy8I | GTNNAC | 3 cut(s) | 193, 638, 1045 |
| Hpy99I | CGWCG | 7 cut(s) | 52, 109, 266, 295, 319, 322, 331 |
| HpyAV | CCTTC | 8 cut(s) | 15, 352, 517, 731, 819, 819, 899, 922 |
| HpyCH4III | ACNGT | 2 cut(s) | 437, 884 |
| HpyCH4IV | ACGT | 2 cut(s) | 104, 314 |
| HpyCH4V | TGCA | 4 cut(s) | 79, 93, 568, 1055 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 287, 296, 503, 515, 711, 796 |
| HpyF3I | CTNAG | 2 cut(s) | 579, 747 |
| HpySE526I | ACGT | 2 cut(s) | 104, 314 |
| Hsp92I | GRCGYC | 3 cut(s) | 290, 314, 743 |
| Hsp92II | CATG | 7 cut(s) | 238, 755, 781, 790, 850, 859, 965 |
| HspAI | GCGC | 1 cut(s) | 790 |
| Kzo9I | GATC | 4 cut(s) | 70, 212, 650, 694 |
| LmnI | GCTCC | 6 cut(s) | 145, 151, 280, 286, 361, 369 |
| Lsp1109I | GCAGC | 7 cut(s) | 63, 105, 309, 552, 580, 669, 1039 |
| MaeI | CTAG | 4 cut(s) | 161, 206, 573, 684 |
| MaeII | ACGT | 2 cut(s) | 104, 314 |
| MaeIII | GTNAC | 5 cut(s) | 127, 229, 594, 686, 1015 |
| MalI | GATC | 4 cut(s) | 72, 214, 652, 696 |
| MbiI | CCGCTC | 1 cut(s) | 275 |
| MboI | GATC | 4 cut(s) | 70, 212, 650, 694 |
| MboII | GAAGA | 8 cut(s) | 207, 261, 263, 364, 455, 458, 635, 827 |
| MflI | RGATCY | 2 cut(s) | 70, 650 |
| MhlI | GDGCHC | 6 cut(s) | 65, 366, 431, 461, 587, 716 |
| MluCI | AATT | 2 cut(s) | 463, 762 |
| MlyI | GAGTC | 3 cut(s) | 260, 364, 602 |
| MmeI | TCCRAC | 2 cut(s) | 384, 603 |
| MseI | TTAA | 1 cut(s) | 156 |
| MspA1I | CMGCKG | 1 cut(s) | 660 |
| MspI | CCGG | 5 cut(s) | 278, 468, 615, 980, 1049 |
| MspR9I | CCNGG | 5 cut(s) | 469, 616, 692, 769, 1049 |
| MvaI | CCWGG | 2 cut(s) | 692, 769 |
| MvnI | CGCG | 1 cut(s) | 299 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 287, 296, 503, 515, 711, 796 |
| NciI | CCSGG | 3 cut(s) | 469, 616, 1049 |
| NcoI | CCATGG | 1 cut(s) | 961 |
| NdeII | GATC | 4 cut(s) | 70, 212, 650, 694 |
| NlaIII | CATG | 7 cut(s) | 238, 755, 781, 790, 850, 859, 965 |
| NlaIV | GGNNCC | 6 cut(s) | 282, 459, 460, 652, 715, 967 |
| NmuCI | GTSAC | 4 cut(s) | 127, 229, 594, 1015 |
| NsbI | TGCGCA | 1 cut(s) | 791 |
| NspI | RCATGY | 3 cut(s) | 755, 790, 859 |
| PaeI | GCATGC | 2 cut(s) | 755, 790 |
| PceI | AGGCCT | 1 cut(s) | 165 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 323 |
| PfeI | GAWTC | 3 cut(s) | 40, 183, 909 |
| Pfl23II | CGTACG | 1 cut(s) | 294 |
| PflFI | GACNNNGTC | 1 cut(s) | 316 |
| PleI | GAGTC | 3 cut(s) | 260, 364, 601 |
| PpsI | GAGTC | 3 cut(s) | 260, 364, 601 |
| Psp124BI | GAGCTC | 2 cut(s) | 366, 431 |
| Psp6I | CCWGG | 2 cut(s) | 690, 767 |
| PspEI | GGTNACC | 1 cut(s) | 229 |
| PspGI | CCWGG | 2 cut(s) | 690, 767 |
| PspLI | CGTACG | 1 cut(s) | 294 |
| PspN4I | GGNNCC | 6 cut(s) | 282, 459, 460, 652, 715, 967 |
| PspOMI | GGGCCC | 1 cut(s) | 457 |
| PspPI | GGNCC | 3 cut(s) | 457, 458, 884 |
| PstI | CTGCAG | 2 cut(s) | 81, 570 |
| PstNI | CAGNNNCTG | 2 cut(s) | 373, 660 |
| PsuI | RGATCY | 2 cut(s) | 70, 650 |
| PsyI | GACNNNGTC | 1 cut(s) | 316 |
| PvuII | CAGCTG | 1 cut(s) | 660 |
| RsaI | GTAC | 2 cut(s) | 119, 296 |
| RsaNI | GTAC | 2 cut(s) | 118, 295 |
| SacI | GAGCTC | 2 cut(s) | 366, 431 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| Sau3AI | GATC | 4 cut(s) | 70, 212, 650, 694 |
| Sau96I | GGNCC | 3 cut(s) | 457, 458, 884 |
| SchI | GAGTC | 3 cut(s) | 260, 364, 602 |
| ScrFI | CCNGG | 5 cut(s) | 469, 616, 692, 769, 1049 |
| SduI | GDGCHC | 6 cut(s) | 65, 366, 431, 461, 587, 716 |
| SfcI | CTRYAG | 2 cut(s) | 77, 566 |
| SinI | GGWCC | 1 cut(s) | 884 |
| SphI | GCATGC | 2 cut(s) | 755, 790 |
| Sse9I | AATT | 2 cut(s) | 463, 762 |
| SseBI | AGGCCT | 1 cut(s) | 165 |
| SspMI | CTAG | 4 cut(s) | 161, 206, 573, 684 |
| SstI | GAGCTC | 2 cut(s) | 366, 431 |
| StuI | AGGCCT | 1 cut(s) | 165 |
| StyD4I | CCNGG | 5 cut(s) | 467, 614, 690, 767, 1047 |
| StyI | CCWWGG | 1 cut(s) | 961 |
| TaaI | ACNGT | 2 cut(s) | 437, 884 |
| TaiI | ACGT | 2 cut(s) | 107, 317 |
| TaqI | TCGA | 2 cut(s) | 221, 431 |
| TasI | AATT | 2 cut(s) | 463, 762 |
| TauI | GCSGC | 6 cut(s) | 180, 379, 389, 497, 509, 521 |
| TfiI | GAWTC | 3 cut(s) | 40, 183, 909 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseFI | GTSAC | 4 cut(s) | 127, 229, 594, 1015 |
| TseI | GCWGC | 7 cut(s) | 76, 93, 322, 565, 568, 657, 1052 |
| Tsp45I | GTSAC | 4 cut(s) | 127, 229, 594, 1015 |
| TspDTI | ATGAA | 1 cut(s) | 854 |
| TspGWI | ACGGA | 3 cut(s) | 273, 344, 350 |
| TspRI | CASTG | 1 cut(s) | 39 |
| Tth111I | GACNNNGTC | 1 cut(s) | 316 |
| VpaK11BI | GGWCC | 1 cut(s) | 884 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 645 |
| XapI | RAATTY | 1 cut(s) | 762 |
| XceI | RCATGY | 3 cut(s) | 755, 790, 859 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 775 |
| XspI | CTAG | 4 cut(s) | 161, 206, 573, 684 |
| ZraI | GACGTC | 1 cut(s) | 315 |