Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010347

Physical Location & Seq

Genomic Coordinates Forward (+)

63687752 .. 63691237

Gene Structure 3486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG384000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGCGAAGCTAACGAAGGGAGGAGGCGAGCAATGGAGAACCTGACGTTTCAGATGGATAAGTACCCGAGAGATCTGCTGCAGAGATTAATGTGCAGAAACGACGCGTCGCAGTCGAAATATGAGGAGGGAAATGAGGAGGAGGAGGAGGAGCTGGAGCTAAATCTGGGGCTGTCTTTGGGAGGAAGATTCGGAGTAGACAGGAGCGAGAAAAGCAAGCTAGTCCGATCTTCCTCGATTGCGGTGACTATGCCGTTTTGTAGGGAAGAGAACGACGACTCGGCGGCGAAGGCGGCGTCGTACGCGGGGCTGATGAGGGCGTCGTCGCTTCCGACGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAGTTGCAGACGCTGCGGCGGTTGGCGGCGAAGCGGAGGAGGTCGGAGAAGCAGAGGAACAGCAGCAGCAGCAGCAAGGAGGAAGAGGAAAGGCGTGAATTTGAGGTGGGACCCACTTCAGGGATGAGGGTGAATAATCCGGCGGTGGTGCAGCCGTTTTGGGCGGCGAGGCAAGCGGTTGGTGGCGGCGGTGGAGGAGTGGATCCCTTGGCGAAGGGTAAAAATGACATTTTGGGTGGCTTTCAGGGGTTTGGGCTGCAGCCCAGTTCTCAGGGCTCGGTGGAGTCACAAGGTGGTGGAAGCTCGTCGGGGTTGTCAGAAATGGAGAGTAAACCTCTTCAAGGATCCAGCAGCTGTGGTGAAGCAAGAAGCCCTATTAGTAATCAGGATCCACGAAGCAATCAGGGCACCACCCTTCGTTCCTTGGGGTCATTGACGCCTGAGCATGCTGGATGCATTTCCAGGGCTGTCATGGAAAACATGTGTAAGAAGCCTAATCCTTCAGAAAATAAAGGAAGGGAAACTAGGACGAATGCCATGGAGGATATGCCTTGTGTTTTCACAAAAGGAGACGGTCCTAATGGGAGAAAAATAGAAGGAATCCTATACCGATATGGGAAGGGAGAGGAAGTAAGAATAATGTGTGTATGCCACGGCACCTTTCTTTCTCCGGCAGAGTTTGTGAAGCACGCAGGAGGTGGTGACGTCGCGCACCCGCTTCGGCACATAGTTGTAAACCCTGCTGCAACTGCCTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

375

Amino Acids

40.87

Weight (kDa)

7.56

Isoelectric Point (pI)

71.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EAR	PF07897	47 - 82	5e-16	Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP	PF16136	104 - 140	1.7e-20	Putative nuclear localisation signal in Ninja/AFP proteins
TDBD	PF16135	334 - 366	6.4e-08	Tify domain binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13740
fragaria_vesca	FvH4_4g29910 FvH4_4g29910
malus_domestica	MD13G1061900.v1.1 MD16G1060400.v1.1
prunus_persica	Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1
pyrus_communis	pycom13g05440 pycom16g05260
rosa_chinensis	RchiOBHm_Chr4g0438171
rosa_laevigata	RLG00000006382
rosa_multiflora	Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379310
rosa_rugosa	Rorug04G0308200
rosa_samantha	Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800
rosa_wichuraiana	Rw0G006360 Rw0G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1074
AccB1I	GGYRCC	2 cut(s)	773, 1022
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	3 cut(s)	107, 305, 1076
AclWI	GGATC	6 cut(s)	563, 576, 705, 718, 749, 762
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	2 cut(s)	468, 852
AcyI	GRCGYC	4 cut(s)	296, 320, 803, 1071
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	2 cut(s)	65, 302
AfiI	CCNNNNNNNGG	3 cut(s)	485, 486, 707
AflIII	ACRYGT	2 cut(s)	105, 846
AgsI	TTSAA	1 cut(s)	707
AjnI	CCWGG	1 cut(s)	827
AluBI	AGCT	6 cut(s)	11, 154, 160, 220, 669, 720
AluI	AGCT	6 cut(s)	11, 154, 160, 220, 669, 720
Alw26I	GTCTC	2 cut(s)	332, 930
AlwI	GGATC	6 cut(s)	563, 576, 705, 718, 749, 762
AlwNI	CAGNNNCTG	2 cut(s)	379, 720
Ama87I	CYCGRG	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	464
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AseI	ATTAAT	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	1078
AspS9I	GGNCC	2 cut(s)	476, 941
AsuHPI	GGTGA	4 cut(s)	256, 508, 737, 1079
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	476, 941
BaeGI	GKGCMC	1 cut(s)	776
BamHI	GGATCC	3 cut(s)	568, 710, 754
BanI	GGYRCC	2 cut(s)	773, 1022
BanII	GRGCYC	1 cut(s)	644
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	3 cut(s)	238, 505, 1036
BcgI	CGANNNNNNTGC	4 cut(s)	58, 92, 1067, 1101
BciT130I	CCWGG	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	332, 930
BfaI	CTAG	2 cut(s)	221, 891
BfmI	CTRYAG	2 cut(s)	80, 623
BglII	AGATCT	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	829
Bme18I	GGWCC	2 cut(s)	476, 941
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	476, 941
BmiI	GGNNCC	7 cut(s)	477, 478, 570, 712, 756, 775, 1024
BmrFI	CCNGG	1 cut(s)	829
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	1 cut(s)	809
BmuI	ACTGGG	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	807
BsaHI	GRCGYC	4 cut(s)	296, 320, 803, 1071
BsaJI	CCNNGG	5 cut(s)	573, 789, 828, 903, 1018
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 981, 1011
Bsc4I	CCNNNNNNNGG	3 cut(s)	485, 486, 707
Bse1I	ACTGG	1 cut(s)	630
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	829
BseDI	CCNNGG	5 cut(s)	573, 789, 828, 903, 1018
BseGI	GGATG	2 cut(s)	495, 824
BseLI	CCNNNNNNNGG	3 cut(s)	485, 486, 707
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	650, 798
BseNI	ACTGG	1 cut(s)	630
BseSI	GKGCMC	1 cut(s)	776
BsgI	GTGCAG	2 cut(s)	115, 536
Bsh1236I	CGCG	3 cut(s)	107, 305, 1076
BshNI	GGYRCC	2 cut(s)	773, 1022
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	506, 1037
BsiWI	CGTACG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	3 cut(s)	485, 486, 707
BsmAI	GTCTC	2 cut(s)	332, 930
BsmBI	CGTCTC	2 cut(s)	332, 930
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	904
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	644, 776
Bsp143I	GATC	5 cut(s)	73, 227, 568, 710, 754
Bsp19I	CCATGG	1 cut(s)	903
BspCNI	CTCAG	2 cut(s)	649, 799
BspFNI	CGCG	3 cut(s)	107, 305, 1076
BspLI	GGNNCC	7 cut(s)	477, 478, 570, 712, 756, 775, 1024
BspMAI	CTGCAG	2 cut(s)	84, 627
BspPI	GGATC	6 cut(s)	563, 576, 705, 718, 749, 762
BspT107I	GGYRCC	2 cut(s)	773, 1022
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	5 cut(s)	573, 789, 828, 903, 1018
BssMI	GATC	5 cut(s)	73, 227, 568, 710, 754
BssNI	GRCGYC	4 cut(s)	296, 320, 803, 1071
BssT1I	CCWWGG	3 cut(s)	573, 789, 903
Bst2UI	CCWGG	1 cut(s)	829
Bst4CI	ACNGT	1 cut(s)	941
Bst6I	CTCTTC	4 cut(s)	261, 353, 444, 708
BstACI	GRCGYC	4 cut(s)	296, 320, 803, 1071
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstC8I	GCNNGC	5 cut(s)	30, 218, 540, 813, 1056
BstDEI	CTNAG	2 cut(s)	636, 807
BstDSI	CCRYGG	2 cut(s)	903, 1018
BstENI	CCTNNNNNAGG	1 cut(s)	705
BstF5I	GGATG	2 cut(s)	495, 824
BstFNI	CGCG	3 cut(s)	107, 305, 1076
BstHHI	GCGC	1 cut(s)	1078
BstKTI	GATC	5 cut(s)	76, 230, 571, 713, 757
BstMAI	GTCTC	2 cut(s)	332, 930
BstMBI	GATC	5 cut(s)	73, 227, 568, 710, 754
BstNI	CCWGG	1 cut(s)	829
BstNSI	RCATGY	2 cut(s)	815, 850
BstSCI	CCNGG	1 cut(s)	827
BstSFI	CTRYAG	2 cut(s)	80, 623
BstSLI	GKGCMC	1 cut(s)	776
BstUI	CGCG	3 cut(s)	107, 305, 1076
BstX2I	RGATCY	4 cut(s)	73, 568, 710, 754
BstYI	RGATCY	4 cut(s)	73, 568, 710, 754
BtgI	CCRYGG	2 cut(s)	903, 1018
BtsCI	GGATG	2 cut(s)	495, 824
Cac8I	GCNNGC	5 cut(s)	30, 218, 540, 813, 1056
CaiI	CAGNNNCTG	2 cut(s)	379, 720
CfoI	GCGC	1 cut(s)	1078
Cfr13I	GGNCC	2 cut(s)	476, 941
CseI	GACGC	6 cut(s)	96, 113, 285, 309, 385, 811
Csp6I	GTAC	2 cut(s)	64, 301
CviAII	CATG	4 cut(s)	812, 838, 847, 904
CviQI	GTAC	2 cut(s)	64, 301
DdeI	CTNAG	2 cut(s)	636, 807
DpnI	GATC	5 cut(s)	75, 229, 570, 712, 756
DpnII	GATC	5 cut(s)	73, 227, 568, 710, 754
DraIII	CACNNNGTG	1 cut(s)	659
Eam1104I	CTCTTC	4 cut(s)	261, 353, 444, 708
EarI	CTCTTC	4 cut(s)	261, 353, 444, 708
Eco130I	CCWWGG	3 cut(s)	573, 789, 903
Eco24I	GRGCYC	1 cut(s)	644
Eco47I	GGWCC	2 cut(s)	476, 941
Eco57I	CTGAAG	2 cut(s)	468, 852
Eco88I	CYCGRG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	705
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	827
EcoT14I	CCWWGG	3 cut(s)	573, 789, 903
EcoT22I	ATGCAT	1 cut(s)	824
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	3 cut(s)	573, 789, 903
Esp3I	CGTCTC	2 cut(s)	332, 930
FaeI	CATG	4 cut(s)	815, 841, 850, 907
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	4 cut(s)	811, 837, 846, 903
FauI	CCCGC	2 cut(s)	298, 1089
FblI	GTMKAC	1 cut(s)	198
FokI	GGATG	2 cut(s)	502, 831
FriOI	GRGCYC	1 cut(s)	644
FspBI	CTAG	2 cut(s)	221, 891
GlaI	GCGC	1 cut(s)	1077
GsuI	CTGGAG	1 cut(s)	176
HapII	CCGG	2 cut(s)	506, 1037
HgaI	GACGC	6 cut(s)	96, 113, 285, 309, 385, 811
HhaI	GCGC	1 cut(s)	1078
Hin1I	GRCGYC	4 cut(s)	296, 320, 803, 1071
Hin1II	CATG	4 cut(s)	815, 841, 850, 907
Hin6I	GCGC	1 cut(s)	1076
HinP1I	GCGC	1 cut(s)	1076
HinfI	GANTC	4 cut(s)	189, 278, 650, 966
HpaII	CCGG	2 cut(s)	506, 1037
HphI	GGTGA	4 cut(s)	256, 508, 737, 1079
Hpy166II	GTNNAC	3 cut(s)	199, 698, 1102
Hpy188I	TCNGA	7 cut(s)	54, 194, 227, 333, 412, 685, 871
Hpy188III	TCNNGA	1 cut(s)	752
Hpy8I	GTNNAC	3 cut(s)	199, 698, 1102
Hpy99I	CGWCG	9 cut(s)	107, 112, 278, 301, 325, 328, 337, 676, 1076
HpyAV	CCTTC	9 cut(s)	11, 283, 358, 574, 791, 876, 876, 956, 979
HpyCH4III	ACNGT	1 cut(s)	941
HpyCH4IV	ACGT	2 cut(s)	47, 1071
HpyCH4V	TGCA	7 cut(s)	82, 96, 373, 517, 625, 822, 1112
HpyF3I	CTNAG	2 cut(s)	636, 807
HpySE526I	ACGT	2 cut(s)	47, 1071
Hsp92I	GRCGYC	4 cut(s)	296, 320, 803, 1071
Hsp92II	CATG	4 cut(s)	815, 841, 850, 907
HspAI	GCGC	1 cut(s)	1076
KflI	GGGWCCC	1 cut(s)	476
Kzo9I	GATC	5 cut(s)	73, 227, 568, 710, 754
LmnI	GCTCC	3 cut(s)	151, 157, 204
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	2 cut(s)	221, 891
MaeII	ACGT	2 cut(s)	47, 1071
MaeIII	GTNAC	3 cut(s)	244, 651, 1067
MalI	GATC	5 cut(s)	75, 229, 570, 712, 756
MboI	GATC	5 cut(s)	73, 227, 568, 710, 754
MboII	GAAGA	6 cut(s)	198, 222, 278, 370, 461, 695
MflI	RGATCY	4 cut(s)	73, 568, 710, 754
MhlI	GDGCHC	2 cut(s)	644, 776
MluCI	AATT	1 cut(s)	464
MluI	ACGCGT	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	272, 659
MmeI	TCCRAC	2 cut(s)	356, 390
Mph1103I	ATGCAT	1 cut(s)	824
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	2 cut(s)	506, 1037
MspR9I	CCNGG	1 cut(s)	829
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	829
MvnI	CGCG	3 cut(s)	107, 305, 1076
NcoI	CCATGG	1 cut(s)	903
NdeII	GATC	5 cut(s)	73, 227, 568, 710, 754
NlaIII	CATG	4 cut(s)	815, 841, 850, 907
NlaIV	GGNNCC	7 cut(s)	477, 478, 570, 712, 756, 775, 1024
NmeAIII	GCCGAG	1 cut(s)	260
NmuCI	GTSAC	3 cut(s)	244, 651, 1067
NsiI	ATGCAT	1 cut(s)	824
NspI	RCATGY	2 cut(s)	815, 850
PaeI	GCATGC	1 cut(s)	815
PciI	ACATGT	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PctI	GAATGC	1 cut(s)	904
PfeI	GAWTC	2 cut(s)	189, 966
Pfl23II	CGTACG	1 cut(s)	300
PleI	GAGTC	2 cut(s)	272, 658
PpsI	GAGTC	2 cut(s)	272, 658
PpuMI	RGGWCCY	1 cut(s)	476
PscI	ACATGT	1 cut(s)	846
PshBI	ATTAAT	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	827
PspGI	CCWGG	1 cut(s)	827
PspLI	CGTACG	1 cut(s)	300
PspN4I	GGNNCC	7 cut(s)	477, 478, 570, 712, 756, 775, 1024
PspPI	GGNCC	2 cut(s)	476, 941
PspPPI	RGGWCCY	1 cut(s)	476
PstI	CTGCAG	2 cut(s)	84, 627
PstNI	CAGNNNCTG	2 cut(s)	379, 720
PsuI	RGATCY	4 cut(s)	73, 568, 710, 754
PvuII	CAGCTG	1 cut(s)	720
RsaI	GTAC	2 cut(s)	65, 302
RsaNI	GTAC	2 cut(s)	64, 301
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	5 cut(s)	73, 227, 568, 710, 754
Sau96I	GGNCC	2 cut(s)	476, 941
SchI	GAGTC	2 cut(s)	272, 659
ScrFI	CCNGG	1 cut(s)	829
SduI	GDGCHC	2 cut(s)	644, 776
SfaNI	GCATC	1 cut(s)	809
SfcI	CTRYAG	2 cut(s)	80, 623
SinI	GGWCC	2 cut(s)	476, 941
SphI	GCATGC	1 cut(s)	815
Sse9I	AATT	1 cut(s)	464
SspMI	CTAG	2 cut(s)	221, 891
StyD4I	CCNGG	1 cut(s)	827
StyI	CCWWGG	3 cut(s)	573, 789, 903
TaaI	ACNGT	1 cut(s)	941
TaiI	ACGT	2 cut(s)	50, 1074
TaqI	TCGA	2 cut(s)	116, 236
TasI	AATT	1 cut(s)	464
TauI	GCSGC	6 cut(s)	287, 296, 385, 395, 533, 555
TfiI	GAWTC	2 cut(s)	189, 966
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseFI	GTSAC	3 cut(s)	244, 651, 1067
Tsp45I	GTSAC	3 cut(s)	244, 651, 1067
TspGWI	ACGGA	2 cut(s)	350, 356
VpaK11BI	GGWCC	2 cut(s)	476, 941
VspI	ATTAAT	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	705
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	2 cut(s)	815, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	835
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	2 cut(s)	221, 891
ZraI	GACGTC	1 cut(s)	1072
Zsp2I	ATGCAT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.