Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010347

Physical Location & Seq

Genomic Coordinates Forward (+)

59735348 .. 59737994

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGCGAAGCTAACGATGGGAGGAGGCGAGCAATGGAGAACCTGACGTTTCAGATGGATAAGTACCCGAGAGATCTGCTGCAGAGATTAATGTGCAGAAACGACGCGTCGCAGTCGAAATATGAGGAGGGAAATGAGGAGGAGGAGCTGGAGCTGAATCTGGGGCTGTCTTTGGGAGGAAGATTCGGAGTAGACAGGAGCGAGAAAAGCAAGCTAGTCCGATCTTCCTCGATTGCGGTGACTATGCCGTTTTGTAGGGAAGAGAACGACGACTCGGCGGCTCCGGCGGCGTCGAAGGCGGCGTCGTACGCGGGGCTGATGAGGGCGTCGTCGCTTCCGACGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAGTTGCAGACGCTGCGGCGGTTGGCGGCGAAGCGGAGGAGGTCGGAGAAGCAGAGGAACAGCAGCCAGGAGGAAGAGGAAAGGCGTGAATTTGAGGTGGGACCCACTTCAGGGATGAGGGCGAATAATCCTGCGGTGGTGCAGCCGTTTTGGGCGGCTGTGACGGCGGCGAGGCAAGCGGTTGGTGGTGGCGGTGGAGGAGTGGATCCCTTGGCGAAGGGTAAAAATGACATTTTGGGTGGCTTTCAGGGGTTTGGGCTGCAGCCCAGTTCTCAGGGCTCGGTGGAGTCACAAGGTGGTGGAAGCTCGTCGGGGTTATCAGAAATGGAGAGTAAACCTTTTCAAGGATCCAGCAGCTGTGGTGAAGCAAGAAGCCCTATTAGTAATCAGGATCCACGAAGCAATCAGGGCACCACCCTTCGTTCTTTGGGGTCATTGACGCCTGAACATGCATCCAGAATTTCCAGGGCTGTCATGGAAAACATGTGTAAGAAGCCTAATCCTTCAGAAAATAAAGGAAGGGAAACTAGGACAAATGCCATGGAGGATATGCCTTGTGTTTTCACAAAAGGAGACGGTCCTAATGGGAGAAAAATAGAAGGAATCCTATACCGATATGGGAAGGGAGAGGAAGTAAGAATAATGTGTGTATGCCACGGCACCTTTCTTTCTCCGGCAGAGTTTGTGAAGCACGCAGGAGGTGGTGACGTAGCGCACCCTCTTCGGCACATAGTTGTAAACCCTGCTGCAACTGCCTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

378

Amino Acids

41.09

Weight (kDa)

8.41

Isoelectric Point (pI)

69.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EAR	PF07897	45 - 80	3.6e-16	Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP	PF16136	106 - 142	1.8e-20	Putative nuclear localisation signal in Ninja/AFP proteins
TDBD	PF16135	337 - 369	6.5e-08	Tify domain binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13740
fragaria_vesca	FvH4_4g29910 FvH4_4g29910
malus_domestica	MD13G1061900.v1.1 MD16G1060400.v1.1
prunus_persica	Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1
pyrus_communis	pycom13g05440 pycom16g05260
rosa_chinensis	RchiOBHm_Chr4g0438171
rosa_laevigata	RLG00000006382
rosa_multiflora	Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379310
rosa_rugosa	Rorug04G0308200
rosa_samantha	Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800
rosa_wichuraiana	Rw0G006360 Rw0G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	782, 1031
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	2 cut(s)	107, 311
AclWI	GGATC	6 cut(s)	572, 585, 714, 727, 758, 771
AcsI	RAATTY	2 cut(s)	461, 831
AcuI	CTGAAG	2 cut(s)	465, 861
AcyI	GRCGYC	4 cut(s)	290, 302, 326, 812
AdeI	CACNNNGTG	1 cut(s)	668
AfaI	GTAC	2 cut(s)	65, 308
AfiI	CCNNNNNNNGG	3 cut(s)	482, 483, 716
AflIII	ACRYGT	2 cut(s)	105, 855
AgsI	TTSAA	1 cut(s)	716
AjnI	CCWGG	2 cut(s)	438, 836
AluBI	AGCT	6 cut(s)	11, 148, 154, 214, 678, 729
AluI	AGCT	6 cut(s)	11, 148, 154, 214, 678, 729
Alw26I	GTCTC	2 cut(s)	338, 939
AlwI	GGATC	6 cut(s)	572, 585, 714, 727, 758, 771
AlwNI	CAGNNNCTG	2 cut(s)	385, 729
Ama87I	CYCGRG	1 cut(s)	67
ApeKI	GCWGC	8 cut(s)	79, 385, 435, 514, 631, 634, 726, 1118
ApoI	RAATTY	2 cut(s)	461, 831
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AseI	ATTAAT	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	1087
AspS9I	GGNCC	2 cut(s)	473, 950
AsuHPI	GGTGA	3 cut(s)	250, 746, 1088
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	473, 950
BaeGI	GKGCMC	1 cut(s)	785
BamHI	GGATCC	3 cut(s)	577, 719, 763
BanI	GGYRCC	2 cut(s)	782, 1031
BanII	GRGCYC	1 cut(s)	653
BbvI	GCAGC	8 cut(s)	66, 372, 447, 526, 618, 646, 738, 1105
BccI	CCATC	2 cut(s)	11, 49
BceAI	ACGGC	4 cut(s)	232, 502, 552, 1045
BcgI	CGANNNNNNTGC	4 cut(s)	58, 92, 1076, 1110
BciT130I	CCWGG	2 cut(s)	440, 838
BcoDI	GTCTC	2 cut(s)	338, 939
BfaI	CTAG	2 cut(s)	215, 900
BfmI	CTRYAG	2 cut(s)	80, 632
BglII	AGATCT	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	440, 838
Bme18I	GGWCC	2 cut(s)	473, 950
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	473, 950
BmiI	GGNNCC	8 cut(s)	282, 474, 475, 579, 721, 765, 784, 1033
BmrFI	CCNGG	2 cut(s)	440, 838
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	1 cut(s)	833
BmuI	ACTGGG	1 cut(s)	633
BpmI	CTGGAG	1 cut(s)	170
BsaHI	GRCGYC	4 cut(s)	290, 302, 326, 812
BsaJI	CCNNGG	4 cut(s)	582, 837, 912, 1027
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 371, 990, 1020
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 483, 716
Bse1I	ACTGG	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	440, 838
BseDI	CCNNGG	4 cut(s)	582, 837, 912, 1027
BseGI	GGATG	2 cut(s)	492, 824
BseLI	CCNNNNNNNGG	3 cut(s)	482, 483, 716
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	1 cut(s)	639
BseRI	GAGGAG	9 cut(s)	37, 140, 152, 155, 158, 365, 368, 424, 585
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	8 cut(s)	66, 372, 447, 526, 618, 646, 738, 1105
BsgI	GTGCAG	2 cut(s)	115, 533
Bsh1236I	CGCG	2 cut(s)	107, 311
BshNI	GGYRCC	2 cut(s)	782, 1031
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	284, 1046
BsiWI	CGTACG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	3 cut(s)	482, 483, 716
BsmAI	GTCTC	2 cut(s)	338, 939
BsmBI	CGTCTC	2 cut(s)	338, 939
BsmFI	GGGAC	1 cut(s)	486
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	653, 785
Bsp143I	GATC	5 cut(s)	73, 221, 577, 719, 763
Bsp19I	CCATGG	1 cut(s)	912
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	2 cut(s)	107, 311
BspLI	GGNNCC	8 cut(s)	282, 474, 475, 579, 721, 765, 784, 1033
BspMAI	CTGCAG	2 cut(s)	84, 636
BspPI	GGATC	6 cut(s)	572, 585, 714, 727, 758, 771
BspT107I	GGYRCC	2 cut(s)	782, 1031
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	639
BssECI	CCNNGG	4 cut(s)	582, 837, 912, 1027
BssMI	GATC	5 cut(s)	73, 221, 577, 719, 763
BssNI	GRCGYC	4 cut(s)	290, 302, 326, 812
BssT1I	CCWWGG	2 cut(s)	582, 912
Bst2UI	CCWGG	2 cut(s)	440, 838
Bst4CI	ACNGT	1 cut(s)	950
Bst6I	CTCTTC	4 cut(s)	255, 359, 441, 1098
BstACI	GRCGYC	4 cut(s)	290, 302, 326, 812
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	4 cut(s)	30, 212, 549, 1065
BstDEI	CTNAG	1 cut(s)	645
BstDSI	CCRYGG	2 cut(s)	912, 1027
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	2 cut(s)	492, 824
BstFNI	CGCG	2 cut(s)	107, 311
BstHHI	GCGC	1 cut(s)	1087
BstKTI	GATC	5 cut(s)	76, 224, 580, 722, 766
BstMAI	GTCTC	2 cut(s)	338, 939
BstMBI	GATC	5 cut(s)	73, 221, 577, 719, 763
BstNI	CCWGG	2 cut(s)	440, 838
BstNSI	RCATGY	2 cut(s)	824, 859
BstSCI	CCNGG	2 cut(s)	438, 836
BstSFI	CTRYAG	2 cut(s)	80, 632
BstSLI	GKGCMC	1 cut(s)	785
BstUI	CGCG	2 cut(s)	107, 311
BstV1I	GCAGC	8 cut(s)	66, 372, 447, 526, 618, 646, 738, 1105
BstX2I	RGATCY	4 cut(s)	73, 577, 719, 763
BstYI	RGATCY	4 cut(s)	73, 577, 719, 763
BtgI	CCRYGG	2 cut(s)	912, 1027
BtsCI	GGATG	2 cut(s)	492, 824
Cac8I	GCNNGC	4 cut(s)	30, 212, 549, 1065
CaiI	CAGNNNCTG	2 cut(s)	385, 729
CfoI	GCGC	1 cut(s)	1087
Cfr13I	GGNCC	2 cut(s)	473, 950
CseI	GACGC	7 cut(s)	96, 113, 279, 291, 315, 391, 820
Csp6I	GTAC	2 cut(s)	64, 307
CviAII	CATG	4 cut(s)	821, 847, 856, 913
CviQI	GTAC	2 cut(s)	64, 307
DdeI	CTNAG	1 cut(s)	645
DpnI	GATC	5 cut(s)	75, 223, 579, 721, 765
DpnII	GATC	5 cut(s)	73, 221, 577, 719, 763
DraIII	CACNNNGTG	1 cut(s)	668
Eam1104I	CTCTTC	4 cut(s)	255, 359, 441, 1098
EarI	CTCTTC	4 cut(s)	255, 359, 441, 1098
Eco130I	CCWWGG	2 cut(s)	582, 912
Eco24I	GRGCYC	1 cut(s)	653
Eco47I	GGWCC	2 cut(s)	473, 950
Eco57I	CTGAAG	2 cut(s)	465, 861
Eco88I	CYCGRG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	438, 836
EcoT14I	CCWWGG	2 cut(s)	582, 912
EcoT22I	ATGCAT	1 cut(s)	826
EcoT38I	GRGCYC	1 cut(s)	653
ErhI	CCWWGG	2 cut(s)	582, 912
Esp3I	CGTCTC	2 cut(s)	338, 939
FaeI	CATG	4 cut(s)	824, 850, 859, 916
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	4 cut(s)	820, 846, 855, 912
FauI	CCCGC	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	192
FokI	GGATG	2 cut(s)	499, 811
FriOI	GRGCYC	1 cut(s)	653
FspBI	CTAG	2 cut(s)	215, 900
GlaI	GCGC	1 cut(s)	1086
GsuI	CTGGAG	1 cut(s)	170
HapII	CCGG	2 cut(s)	284, 1046
HgaI	GACGC	7 cut(s)	96, 113, 279, 291, 315, 391, 820
HhaI	GCGC	1 cut(s)	1087
Hin1I	GRCGYC	4 cut(s)	290, 302, 326, 812
Hin1II	CATG	4 cut(s)	824, 850, 859, 916
Hin6I	GCGC	1 cut(s)	1085
HinP1I	GCGC	1 cut(s)	1085
HinfI	GANTC	5 cut(s)	157, 183, 272, 659, 975
HpaII	CCGG	2 cut(s)	284, 1046
HphI	GGTGA	3 cut(s)	250, 746, 1088
Hpy166II	GTNNAC	3 cut(s)	193, 707, 1111
Hpy188I	TCNGA	7 cut(s)	54, 188, 221, 339, 418, 694, 880
Hpy188III	TCNNGA	2 cut(s)	761, 828
Hpy8I	GTNNAC	3 cut(s)	193, 707, 1111
Hpy99I	CGWCG	9 cut(s)	107, 112, 272, 295, 307, 331, 334, 343, 685
HpyAV	CCTTC	8 cut(s)	289, 364, 583, 800, 885, 885, 965, 988
HpyCH4III	ACNGT	1 cut(s)	950
HpyCH4IV	ACGT	2 cut(s)	47, 1080
HpyCH4V	TGCA	7 cut(s)	82, 96, 379, 514, 634, 824, 1121
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	2 cut(s)	47, 1080
Hsp92I	GRCGYC	4 cut(s)	290, 302, 326, 812
Hsp92II	CATG	4 cut(s)	824, 850, 859, 916
HspAI	GCGC	1 cut(s)	1085
KflI	GGGWCCC	1 cut(s)	473
Kzo9I	GATC	5 cut(s)	73, 221, 577, 719, 763
LmnI	GCTCC	4 cut(s)	145, 151, 198, 286
Lsp1109I	GCAGC	8 cut(s)	66, 372, 447, 526, 618, 646, 738, 1105
LweI	GCATC	1 cut(s)	833
MaeI	CTAG	2 cut(s)	215, 900
MaeII	ACGT	2 cut(s)	47, 1080
MaeIII	GTNAC	4 cut(s)	238, 532, 660, 1076
MalI	GATC	5 cut(s)	75, 223, 579, 721, 765
MboI	GATC	5 cut(s)	73, 221, 577, 719, 763
MboII	GAAGA	6 cut(s)	192, 216, 272, 376, 458, 1085
MflI	RGATCY	4 cut(s)	73, 577, 719, 763
MhlI	GDGCHC	2 cut(s)	653, 785
MluCI	AATT	2 cut(s)	461, 831
MluI	ACGCGT	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	266, 668
MmeI	TCCRAC	2 cut(s)	362, 396
Mph1103I	ATGCAT	1 cut(s)	826
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	2 cut(s)	284, 1046
MspR9I	CCNGG	2 cut(s)	440, 838
MvaI	CCWGG	2 cut(s)	440, 838
MvnI	CGCG	2 cut(s)	107, 311
NcoI	CCATGG	1 cut(s)	912
NdeII	GATC	5 cut(s)	73, 221, 577, 719, 763
NlaIII	CATG	4 cut(s)	824, 850, 859, 916
NlaIV	GGNNCC	8 cut(s)	282, 474, 475, 579, 721, 765, 784, 1033
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	4 cut(s)	238, 532, 660, 1076
NsiI	ATGCAT	1 cut(s)	826
NspI	RCATGY	2 cut(s)	824, 859
PciI	ACATGT	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	2 cut(s)	299, 335
PfeI	GAWTC	3 cut(s)	157, 183, 975
Pfl23II	CGTACG	1 cut(s)	306
PleI	GAGTC	2 cut(s)	266, 667
PpsI	GAGTC	2 cut(s)	266, 667
PpuMI	RGGWCCY	1 cut(s)	473
PscI	ACATGT	1 cut(s)	855
PshBI	ATTAAT	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	2 cut(s)	438, 836
PspGI	CCWGG	2 cut(s)	438, 836
PspLI	CGTACG	1 cut(s)	306
PspN4I	GGNNCC	8 cut(s)	282, 474, 475, 579, 721, 765, 784, 1033
PspPI	GGNCC	2 cut(s)	473, 950
PspPPI	RGGWCCY	1 cut(s)	473
PstI	CTGCAG	2 cut(s)	84, 636
PstNI	CAGNNNCTG	2 cut(s)	385, 729
PsuI	RGATCY	4 cut(s)	73, 577, 719, 763
PvuII	CAGCTG	1 cut(s)	729
RsaI	GTAC	2 cut(s)	65, 308
RsaNI	GTAC	2 cut(s)	64, 307
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	5 cut(s)	73, 221, 577, 719, 763
Sau96I	GGNCC	2 cut(s)	473, 950
SchI	GAGTC	2 cut(s)	266, 668
ScrFI	CCNGG	2 cut(s)	440, 838
SduI	GDGCHC	2 cut(s)	653, 785
SfaNI	GCATC	1 cut(s)	833
SfcI	CTRYAG	2 cut(s)	80, 632
SinI	GGWCC	2 cut(s)	473, 950
Sse9I	AATT	2 cut(s)	461, 831
SspMI	CTAG	2 cut(s)	215, 900
StyD4I	CCNGG	2 cut(s)	438, 836
StyI	CCWWGG	2 cut(s)	582, 912
TaaI	ACNGT	1 cut(s)	950
TaiI	ACGT	2 cut(s)	50, 1083
TaqI	TCGA	3 cut(s)	116, 230, 293
TasI	AATT	2 cut(s)	461, 831
TauI	GCSGC	7 cut(s)	281, 290, 302, 391, 401, 530, 542
TfiI	GAWTC	3 cut(s)	157, 183, 975
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseFI	GTSAC	4 cut(s)	238, 532, 660, 1076
TseI	GCWGC	8 cut(s)	79, 385, 435, 514, 631, 634, 726, 1118
Tsp45I	GTSAC	4 cut(s)	238, 532, 660, 1076
TspGWI	ACGGA	2 cut(s)	356, 362
VpaK11BI	GGWCC	2 cut(s)	473, 950
VspI	ATTAAT	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	714
XapI	RAATTY	2 cut(s)	461, 831
XceI	RCATGY	2 cut(s)	824, 859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	2 cut(s)	215, 900
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.