MD13G1061900.v1.1

Ninja-family protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
4334828 .. 4338108
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1061900.v1.1.491

Sequence Viewer

Length: 1194 bp
ATGGGGGAAGCTAATGAAAGGAGAAGGAGAGCAATGGAAAATCTCTCTCTGCAAATGGATAAGTACCCGAGAGATTTGCTGCAGAGATTAATGTGCAGAAGCAACGACGCAACGACGCAGTTGCAATATGCAGAGGCTAACGAAGAAGAAGAGTCGGATGAGCTGGAGTTGAATCTCGGGCTTTCGTTGGGCGGCCGATTCGGGGTCGACAAGAGTGCCAAAAACAAACTAATCCGATCTTCGTCGATTGCCGGGACGATGCCGTTTGTGAGGGACGACAACGAAGCGACTGCGCCGTCGTACACGGCGGGGCTGATGAGGACGTCTTCGCTTCCGGCGGAGGCGGAGGAGGAGTGGAGGAAGAGGAAGGAGTTGCAGACGCTGAGGCGGTTGGAGGCGAAAAGGAGGAGGTCGGAGAAGCAGAGGAACTCAAAGGCCGAGAAAGAAGGGGGTTCTGTGGAGGAGGAAAAGCGCGAACTTGAGGGCTCAGTTGGGCCCAATTCGGCGGGTGGTAGGGGTAATCGGACGGCAGGGCCGCCTTTCGGGTTGCCTAGTTGGGTTGCGGCAGCAGTTGCTAGGCAAGCTGCTAGTGGCAGTGGCAGTGGCAGTGGCGGTGGCGGAGTGGAAAAAAATGCATTCACGAAATTCAATGGTGAGATTTTGAGTGGGTTGCAAGGATTTGGAGGACAACCCATTTTGCAGGCCTCGGCGGAGTCGCAAGGCGGAAGCTCATCGGGGATGTCGGAATTGGAGAGTAAACCTCTTCAAGGAACCAGCAGCTGCGGTGAAGCAAGAAACCCTACACCCGCTAGCAACCAGTCGCTTCAAGAACGAAGTAAAAACACCGTTGGCTCTTCAGGCACGGGAACAACAGACGACGCATCCAGAACTCCCAAACCCGACATAGAGAACCCGTCTAGGAAGCCAAATACGCAAGAAAACAGCAAAAGGGAAACGAGCAGGAACGGGATGGAGGACATGCCTTGTGTTTTCACGAAAGGGGACGGCCCAAATGGTAGAAAAGTTGAGGGGATTCTGTACCGATATGGGAAGGGAGAGGAAGTGAGAATAATGTGTATATGCCATGGAAGCTTTCTGTCTCCGGCGGAGTTCGTGAAGCATGCAGGAGGGAGCGATGTCACTAACCCACTTAGGCATATTGTTGTAAACCCAGCTGCCACTTCCTTTTTGTAA

Protein Analysis

398

Amino Acids

42.66

Weight (kDa)

8.19

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 50 - 85 7.3e-16 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 105 - 141 1.9e-20 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 356 - 388 6.5e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 295
AatII GACGTC 1 cut(s) 326
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 474
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 1 cut(s) 840
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 3 cut(s) 65, 302, 1040
AfiI CCNNNNNNNGG 3 cut(s) 202, 542, 767
AgsI TTSAA 4 cut(s) 172, 649, 767, 827
AluBI AGCT 7 cut(s) 11, 163, 584, 729, 780, 1092, 1175
AluI AGCT 7 cut(s) 11, 163, 584, 729, 780, 1092, 1175
Alw26I GTCTC 1 cut(s) 1104
AlwNI CAGNNNCTG 2 cut(s) 382, 780
Ama87I CYCGRG 2 cut(s) 67, 176
AoxI GGCC 6 cut(s) 193, 435, 494, 533, 702, 1006
ApaI GGGCCC 1 cut(s) 498
ApeKI GCWGC 6 cut(s) 79, 566, 584, 777, 780, 1175
ApoI RAATTY 1 cut(s) 644
AseI ATTAAT 1 cut(s) 89
AspLEI GCGC 2 cut(s) 295, 474
AspS9I GGNCC 4 cut(s) 494, 495, 533, 1007
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 665, 797
AsuNHI GCTAGC 1 cut(s) 809
AvaI CYCGRG 2 cut(s) 67, 176
BaeGI GKGCMC 1 cut(s) 498
BanII GRGCYC 2 cut(s) 488, 498
BbsI GAAGAC 1 cut(s) 318
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 6 cut(s) 66, 571, 578, 767, 789, 1162
BccI CCATC 1 cut(s) 964
BceAI ACGGC 5 cut(s) 247, 280, 321, 543, 1021
BcgI CGANNNNNNTGC 8 cut(s) 58, 92, 103, 137, 197, 231, 272, 306
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 1104
BfaI CTAG 5 cut(s) 552, 576, 588, 810, 918
BfmI CTRYAG 1 cut(s) 80
BisI GCNGC 9 cut(s) 80, 193, 536, 564, 567, 585, 778, 781, 1176
BlsI GCNGC 9 cut(s) 81, 194, 537, 565, 568, 586, 779, 782, 1177
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 2 cut(s) 67, 176
BmgT120I GGNCC 4 cut(s) 494, 495, 533, 1007
BmiI GGNNCC 2 cut(s) 496, 772
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 2 cut(s) 249, 890
BmtI GCTAGC 1 cut(s) 813
BpiI GAAGAC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 745, 777
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 705, 1084
BsaXI ACNNNNNCTCC 4 cut(s) 338, 368, 1047, 1077
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 542, 767
Bse1I ACTGG 1 cut(s) 817
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 705, 1084
BseGI GGATG 4 cut(s) 163, 744, 881, 975
BseLI CCNNNNNNNGG 3 cut(s) 202, 542, 767
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 374, 501
BseNI ACTGG 1 cut(s) 817
BseRI GAGGAG 4 cut(s) 362, 365, 421, 476
BseSI GKGCMC 1 cut(s) 498
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 6 cut(s) 66, 571, 578, 767, 789, 1162
BseYI CCCAGC 1 cut(s) 1171
BsgI GTGCAG 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 6 cut(s) 195, 437, 496, 535, 704, 1008
BsiEI CGRYCG 1 cut(s) 196
BsiHKCI CYCGRG 2 cut(s) 67, 176
BsiSI CCGG 3 cut(s) 252, 335, 1103
BslFI GGGAC 3 cut(s) 268, 287, 1016
BslI CCNNNNNNNGG 3 cut(s) 202, 542, 767
BsmAI GTCTC 1 cut(s) 1104
BsmFI GGGAC 3 cut(s) 268, 287, 1016
BsmI GAATGC 1 cut(s) 635
BsnI GGCC 6 cut(s) 195, 437, 496, 535, 704, 1008
BsoBI CYCGRG 2 cut(s) 67, 176
Bsp120I GGGCCC 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 488, 498
Bsp143I GATC 1 cut(s) 236
Bsp19I CCATGG 1 cut(s) 1084
BspANI GGCC 6 cut(s) 195, 437, 496, 535, 704, 1008
BspCNI CTCAG 2 cut(s) 375, 500
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 2 cut(s) 496, 772
BspMAI CTGCAG 1 cut(s) 84
BspOI GCTAGC 1 cut(s) 813
BspQI GCTCTTC 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 817
BssECI CCNNGG 2 cut(s) 705, 1084
BssMI GATC 1 cut(s) 236
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 1084
Bst4CI ACNGT 1 cut(s) 847
Bst6I CTCTTC 4 cut(s) 144, 356, 768, 859
BstACI GRCGYC 1 cut(s) 323
BstAPI GCANNNNNTGC 1 cut(s) 572
BstC8I GCNNGC 4 cut(s) 582, 702, 811, 1122
BstDEI CTNAG 3 cut(s) 383, 487, 1151
BstDSI CCRYGG 1 cut(s) 1084
BstENI CCTNNNNNAGG 1 cut(s) 765
BstF5I GGATG 4 cut(s) 163, 744, 881, 975
BstFNI CGCG 1 cut(s) 474
BstHHI GCGC 2 cut(s) 295, 474
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 1104
BstMBI GATC 1 cut(s) 236
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 5 cut(s) 572, 581, 858, 931, 1089
BstNSI RCATGY 2 cut(s) 982, 1124
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 498
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 6 cut(s) 66, 571, 578, 767, 789, 1162
BstV2I GAAGAC 1 cut(s) 318
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 6 cut(s) 195, 437, 496, 535, 704, 1008
BtgI CCRYGG 1 cut(s) 1084
BtgZI GCGATG 1 cut(s) 1149
BtsCI GGATG 4 cut(s) 163, 744, 881, 975
BtsI GCAGTG 3 cut(s) 601, 607, 613
BtsIMutI CAGTG 3 cut(s) 601, 607, 613
Cac8I GCNNGC 4 cut(s) 582, 702, 811, 1122
CaiI CAGNNNCTG 2 cut(s) 382, 780
CfoI GCGC 2 cut(s) 295, 474
Cfr13I GGNCC 4 cut(s) 494, 495, 533, 1007
CseI GACGC 4 cut(s) 116, 124, 388, 887
Csp6I GTAC 3 cut(s) 64, 301, 1039
CviAII CATG 3 cut(s) 979, 1085, 1121
CviQI GTAC 3 cut(s) 64, 301, 1039
DdeI CTNAG 3 cut(s) 383, 487, 1151
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
DrdI GACNNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 4 cut(s) 144, 356, 768, 859
EarI CTCTTC 4 cut(s) 144, 356, 768, 859
EciI GGCGGA 6 cut(s) 353, 359, 633, 725, 738, 1121
EclXI CGGCCG 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 1084
Eco147I AGGCCT 1 cut(s) 704
Eco24I GRGCYC 2 cut(s) 488, 498
Eco52I CGGCCG 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 840
Eco88I CYCGRG 2 cut(s) 67, 176
EcoNI CCTNNNNNAGG 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 1084
EcoT22I ATGCAT 1 cut(s) 637
EcoT38I GRGCYC 2 cut(s) 488, 498
ErhI CCWWGG 1 cut(s) 1084
FaeI CATG 3 cut(s) 982, 1088, 1124
FaiI YATR 9 cut(s) 129, 905, 980, 1047, 1079, 1081, 1086, 1122, 1158
FaqI GGGAC 3 cut(s) 268, 287, 1016
FatI CATG 3 cut(s) 978, 1084, 1120
FauI CCCGC 3 cut(s) 301, 499, 814
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 9 cut(s) 80, 193, 536, 564, 567, 585, 778, 781, 1176
FokI GGATG 4 cut(s) 170, 751, 868, 982
FriOI GRGCYC 2 cut(s) 488, 498
Fsp4HI GCNGC 9 cut(s) 80, 193, 536, 564, 567, 585, 778, 781, 1176
FspBI CTAG 5 cut(s) 552, 576, 588, 810, 918
GlaI GCGC 2 cut(s) 294, 473
GluI GCNGC 9 cut(s) 80, 193, 536, 564, 567, 585, 778, 781, 1176
GsaI CCCAGC 1 cut(s) 1175
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 6 cut(s) 195, 437, 496, 535, 704, 1008
HapII CCGG 3 cut(s) 252, 335, 1103
HgaI GACGC 4 cut(s) 116, 124, 388, 887
HhaI GCGC 2 cut(s) 295, 474
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 3 cut(s) 982, 1088, 1124
Hin6I GCGC 2 cut(s) 293, 472
HinP1I GCGC 2 cut(s) 293, 472
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 1090
HinfI GANTC 5 cut(s) 152, 172, 198, 713, 1033
HpaII CCGG 3 cut(s) 252, 335, 1103
HphI GGTGA 2 cut(s) 665, 797
Hpy166II GTNNAC 4 cut(s) 208, 303, 758, 1168
Hpy188I TCNGA 5 cut(s) 157, 236, 415, 525, 745
Hpy188III TCNNGA 5 cut(s) 640, 827, 885, 994, 1114
Hpy8I GTNNAC 4 cut(s) 208, 303, 758, 1168
Hpy99I CGWCG 5 cut(s) 110, 118, 247, 301, 881
HpyAV CCTTC 4 cut(s) 18, 361, 440, 1045
HpyCH4III ACNGT 1 cut(s) 847
HpyCH4IV ACGT 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 5 cut(s) 572, 581, 858, 931, 1089
HpyF3I CTNAG 3 cut(s) 383, 487, 1151
HpySE526I ACGT 1 cut(s) 323
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 3 cut(s) 982, 1088, 1124
HspAI GCGC 2 cut(s) 293, 472
Kzo9I GATC 1 cut(s) 236
LguI GCTCTTC 1 cut(s) 859
LmnI GCTCC 1 cut(s) 1131
Lsp1109I GCAGC 6 cut(s) 66, 571, 578, 767, 789, 1162
LweI GCATC 2 cut(s) 249, 890
MaeI CTAG 5 cut(s) 552, 576, 588, 810, 918
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 1138
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 8 cut(s) 155, 158, 161, 231, 318, 373, 755, 846
MhlI GDGCHC 2 cut(s) 488, 498
MluCI AATT 3 cut(s) 499, 644, 746
MlyI GAGTC 2 cut(s) 161, 722
MmeI TCCRAC 4 cut(s) 135, 372, 393, 723
Mph1103I ATGCAT 1 cut(s) 637
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 2 cut(s) 780, 1175
MspI CCGG 3 cut(s) 252, 335, 1103
MspR9I CCNGG 1 cut(s) 253
Mva1269I GAATGC 1 cut(s) 635
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 5 cut(s) 572, 581, 858, 931, 1089
NciI CCSGG 1 cut(s) 253
NcoI CCATGG 1 cut(s) 1084
NdeII GATC 1 cut(s) 236
NheI GCTAGC 1 cut(s) 809
NlaIII CATG 3 cut(s) 982, 1088, 1124
NlaIV GGNNCC 2 cut(s) 496, 772
NmeAIII GCCGAG 2 cut(s) 463, 686
NmuCI GTSAC 1 cut(s) 1138
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 2 cut(s) 982, 1124
PaeI GCATGC 1 cut(s) 1124
PceI AGGCCT 1 cut(s) 704
PciSI GCTCTTC 1 cut(s) 859
PctI GAATGC 1 cut(s) 635
PfeI GAWTC 3 cut(s) 172, 198, 1033
PkrI GCNGC 9 cut(s) 81, 194, 537, 565, 568, 586, 779, 782, 1177
PleI GAGTC 2 cut(s) 160, 721
PpsI GAGTC 2 cut(s) 160, 721
PshBI ATTAAT 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 1171
PspN4I GGNNCC 2 cut(s) 496, 772
PspOMI GGGCCC 1 cut(s) 494
PspPI GGNCC 4 cut(s) 494, 495, 533, 1007
PstI CTGCAG 1 cut(s) 84
PstNI CAGNNNCTG 2 cut(s) 382, 780
PvuII CAGCTG 2 cut(s) 780, 1175
RsaI GTAC 3 cut(s) 65, 302, 1040
RsaNI GTAC 3 cut(s) 64, 301, 1039
SalI GTCGAC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 9 cut(s) 80, 193, 536, 564, 567, 585, 778, 781, 1176
Sau3AI GATC 1 cut(s) 236
Sau96I GGNCC 4 cut(s) 494, 495, 533, 1007
SchI GAGTC 2 cut(s) 161, 722
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 2 cut(s) 488, 498
SfaNI GCATC 2 cut(s) 249, 890
SfcI CTRYAG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SphI GCATGC 1 cut(s) 1124
Sse9I AATT 3 cut(s) 499, 644, 746
SseBI AGGCCT 1 cut(s) 704
SspMI CTAG 5 cut(s) 552, 576, 588, 810, 918
StuI AGGCCT 1 cut(s) 704
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 1084
TaaI ACNGT 1 cut(s) 847
TaiI ACGT 1 cut(s) 326
TaqI TCGA 2 cut(s) 207, 245
TasI AATT 3 cut(s) 499, 644, 746
TauI GCSGC 3 cut(s) 195, 538, 566
TfiI GAWTC 3 cut(s) 172, 198, 1033
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 3 cut(s) 601, 607, 613
TseFI GTSAC 1 cut(s) 1138
TseI GCWGC 6 cut(s) 79, 566, 584, 777, 780, 1175
Tsp45I GTSAC 1 cut(s) 1138
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 3 cut(s) 601, 607, 613
VspI ATTAAT 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 765
XapI RAATTY 1 cut(s) 644
XceI RCATGY 2 cut(s) 982, 1124
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 5 cut(s) 552, 576, 588, 810, 918
ZraI GACGTC 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.