pycom13g05440

Ninja-family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
3634428 .. 3637150
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g05440.2

Sequence Viewer

Length: 1191 bp
ATGGGGGAAGCTAATGAAAGGAGAAGGAGAGCAATGGAAAATCTCTCTCTGGAAATGGATAAGTATCCGAGAGATTTGCTGCAGAGATTAATTTGCAGAAGCAACGACGCAACGACGCAGTTGCAATATGCAGAGGCTAACGAAGAAGAAGAGTCGGATGAGCTGGAGTTGAATCTCGGGCTTTCGTTGGGCGGCCGATTCGGGGTCGATAAGAGTGCCAAAAACAAGCTAATCCGATCTTCGTCGATTGCCGGAACGATGCCGTTTGTGAGGGACGACAACGAATCGACGGCGCCGTCGTACACGACGGGGCTGATGAGGACCTCTTCGCTTCCGGCGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAGTTGCAGACGCTGAGGCGGTTGGTGGCGAAAAGGAGGAGGTCGGAGAAGCAGAGGAACTCGAAGGCCGAGAAAGAAGGGGGTTCTGTGGAGGAGGAGAAGTGCGAACTTGAGGGCTCAGTTGGGCCCAATTTGGCGGGTGGTAGGGGTAATCGGACGGCGGAGCCGCCTTTCGGGTTGCCTAGTTGGGTTGCAGCAGCAGTTGCTAGGCAAGCTGCTAGTGGCAGCGGTGGCGGTGGCGGTGGCGGAGTGGAAAAAAATGCATTCACGAAATTCAATGGTGAGATTTTGAGTGGGTTGCAAGGATTTGGAGGACAACCCAATTCGCAGGTCTCGGCGGAGTCACAAGGCGGAAGCTCATCGGGGATGTCGGAATTGGAGAGTAAACCTCTTCCAGGAACCAGCAGCTGCGGTGAAGCAAGAAACCCTACACCCGCTAGCAACCAGTCGCTCCAAGAACGAAGTAATAACGCCGTTGGCTCTTCAGGCACAGGAACAACAGACGACGCATCCAGAACTCCCAAACCCGACATAGAGAGCCCGTCTAGGAAGCCAAATACGCAAGAAAACAGCAAAAGGGAAACGAGCAGGAACGGGATGGAGGACATGCCTTGTGTTTTCACGAAAGGGGACGGCCCAAATGGTAGAAAGGTTGAGGGAATTCTGTACCGATATGGGAAGGGAGAGGAAGTGAGAATAATGTGTATATGCCATGGAAGCTTTCTTTCTCCGGCAGAGTTCGTGAAGCATGCTGGAGGGAGCGATGTCACTAACCCACTTAGGCATATTGTTGTAAATCCAGCTGCCCCTTCCTTTTTGTAA

Protein Analysis

397

Amino Acids

42.52

Weight (kDa)

6.44

Isoelectric Point (pI)

65.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 292
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 2 cut(s) 641, 1029
AcuI CTGAAG 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 2 cut(s) 302, 1037
AfiI CCNNNNNNNGG 3 cut(s) 202, 542, 764
AgsI TTSAA 2 cut(s) 172, 646
AjnI CCWGG 1 cut(s) 763
AluBI AGCT 8 cut(s) 11, 163, 229, 584, 726, 777, 1089, 1172
AluI AGCT 8 cut(s) 11, 163, 229, 584, 726, 777, 1089, 1172
Alw26I GTCTC 2 cut(s) 335, 706
AlwNI CAGNNNCTG 2 cut(s) 382, 777
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 4 cut(s) 193, 435, 494, 1003
ApaI GGGCCC 1 cut(s) 498
ApeKI GCWGC 8 cut(s) 79, 563, 566, 584, 594, 774, 777, 1172
ApoI RAATTY 2 cut(s) 641, 1029
AseI ATTAAT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 4 cut(s) 321, 494, 495, 1004
AsuHPI GGTGA 2 cut(s) 662, 794
AsuNHI GCTAGC 1 cut(s) 806
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 498
BanI GGYRCC 1 cut(s) 292
BanII GRGCYC 3 cut(s) 488, 498, 911
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 8 cut(s) 66, 571, 575, 578, 606, 764, 786, 1159
BccI CCATC 1 cut(s) 961
BceAI ACGGC 6 cut(s) 247, 280, 306, 543, 827, 1018
BcgI CGANNNNNNTGC 6 cut(s) 58, 92, 103, 137, 197, 231
BciT130I CCWGG 1 cut(s) 765
BciVI GTATCC 1 cut(s) 75
BcoDI GTCTC 2 cut(s) 335, 706
BfaI CTAG 5 cut(s) 552, 576, 588, 807, 915
BfmI CTRYAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 688
BfuI GTATCC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 765
Bme18I GGWCC 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 4 cut(s) 321, 494, 495, 1004
BmiI GGNNCC 4 cut(s) 294, 496, 534, 769
BmrFI CCNGG 1 cut(s) 765
BmsI GCATC 2 cut(s) 249, 887
BmtI GCTAGC 1 cut(s) 810
BplI GAGNNNNNCTC 2 cut(s) 742, 774
BpmI CTGGAG 2 cut(s) 185, 1143
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 500
BsaBI GATNNNNATC 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 706
BsaJI CCNNGG 1 cut(s) 1081
BsaXI ACNNNNNCTCC 6 cut(s) 338, 368, 455, 485, 1044, 1074
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 542, 764
Bse1I ACTGG 1 cut(s) 814
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 1 cut(s) 1081
BseGI GGATG 4 cut(s) 163, 741, 878, 972
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 3 cut(s) 202, 542, 764
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 374, 501
BseNI ACTGG 1 cut(s) 814
BseRI GAGGAG 5 cut(s) 362, 365, 421, 476, 479
BseSI GKGCMC 1 cut(s) 498
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 8 cut(s) 66, 571, 575, 578, 606, 764, 786, 1159
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 4 cut(s) 195, 437, 496, 1005
BshNI GGYRCC 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 3 cut(s) 252, 335, 1100
BslFI GGGAC 2 cut(s) 287, 1013
BslI CCNNNNNNNGG 3 cut(s) 202, 542, 764
BsmAI GTCTC 2 cut(s) 335, 706
BsmBI CGTCTC 1 cut(s) 335
BsmFI GGGAC 2 cut(s) 287, 1013
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 4 cut(s) 195, 437, 496, 1005
Bso31I GGTCTC 1 cut(s) 706
BsoBI CYCGRG 1 cut(s) 176
Bsp120I GGGCCC 1 cut(s) 494
Bsp1286I GDGCHC 3 cut(s) 488, 498, 911
Bsp143I GATC 1 cut(s) 236
Bsp19I CCATGG 1 cut(s) 1081
BspANI GGCC 4 cut(s) 195, 437, 496, 1005
BspCNI CTCAG 2 cut(s) 375, 500
BspLI GGNNCC 4 cut(s) 294, 496, 534, 769
BspMAI CTGCAG 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 688
BspOI GCTAGC 1 cut(s) 810
BspQI GCTCTTC 1 cut(s) 856
BspT107I GGYRCC 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 814
BssECI CCNNGG 1 cut(s) 1081
BssMI GATC 1 cut(s) 236
BssNI GRCGYC 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 1081
Bst2UI CCWGG 1 cut(s) 765
Bst6I CTCTTC 5 cut(s) 144, 331, 356, 765, 856
BstACI GRCGYC 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 572
BstC8I GCNNGC 3 cut(s) 582, 808, 1119
BstDEI CTNAG 3 cut(s) 383, 487, 1148
BstDSI CCRYGG 1 cut(s) 1081
BstENI CCTNNNNNAGG 1 cut(s) 762
BstF5I GGATG 4 cut(s) 163, 741, 878, 972
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 2 cut(s) 335, 706
BstMBI GATC 1 cut(s) 236
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 6 cut(s) 572, 581, 600, 855, 928, 1086
BstNI CCWGG 1 cut(s) 765
BstNSI RCATGY 2 cut(s) 979, 1121
BstSCI CCNGG 1 cut(s) 763
BstSFI CTRYAG 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 498
BstV1I GCAGC 8 cut(s) 66, 571, 575, 578, 606, 764, 786, 1159
BstZI CGGCCG 1 cut(s) 193
BsuI GTATCC 1 cut(s) 75
BsuRI GGCC 4 cut(s) 195, 437, 496, 1005
BtgI CCRYGG 1 cut(s) 1081
BtgZI GCGATG 1 cut(s) 1146
BtsCI GGATG 4 cut(s) 163, 741, 878, 972
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 3 cut(s) 582, 808, 1119
CaiI CAGNNNCTG 2 cut(s) 382, 777
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 4 cut(s) 321, 494, 495, 1004
CseI GACGC 4 cut(s) 116, 124, 388, 884
Csp6I GTAC 2 cut(s) 301, 1036
CviAII CATG 3 cut(s) 976, 1082, 1118
CviQI GTAC 2 cut(s) 301, 1036
DdeI CTNAG 3 cut(s) 383, 487, 1148
DinI GGCGCC 1 cut(s) 294
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
DrdI GACNNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 5 cut(s) 144, 331, 356, 765, 856
EarI CTCTTC 5 cut(s) 144, 331, 356, 765, 856
EciI GGCGGA 5 cut(s) 353, 545, 630, 722, 735
EclXI CGGCCG 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 1081
Eco24I GRGCYC 3 cut(s) 488, 498, 911
Eco31I GGTCTC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 321
Eco52I CGGCCG 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 762
EcoO109I RGGNCCY 1 cut(s) 321
EcoRI GAATTC 1 cut(s) 1029
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 1 cut(s) 1081
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 3 cut(s) 488, 498, 911
EgeI GGCGCC 1 cut(s) 294
EheI GGCGCC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 1081
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 3 cut(s) 979, 1085, 1121
FaiI YATR 9 cut(s) 129, 902, 977, 1044, 1076, 1078, 1083, 1119, 1155
FaqI GGGAC 2 cut(s) 287, 1013
FatI CATG 3 cut(s) 975, 1081, 1117
FauI CCCGC 2 cut(s) 499, 811
FokI GGATG 4 cut(s) 170, 748, 865, 979
FriOI GRGCYC 3 cut(s) 488, 498, 911
FspBI CTAG 5 cut(s) 552, 576, 588, 807, 915
GlaI GCGC 1 cut(s) 294
GsuI CTGGAG 2 cut(s) 185, 1143
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 4 cut(s) 195, 437, 496, 1005
HapII CCGG 3 cut(s) 252, 335, 1100
HgaI GACGC 4 cut(s) 116, 124, 388, 884
HhaI GCGC 1 cut(s) 295
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 3 cut(s) 979, 1085, 1121
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 1087
HinfI GANTC 5 cut(s) 152, 172, 198, 284, 710
HpaII CCGG 3 cut(s) 252, 335, 1100
HphI GGTGA 2 cut(s) 662, 794
Hpy166II GTNNAC 2 cut(s) 303, 755
Hpy188I TCNGA 6 cut(s) 69, 157, 236, 415, 525, 742
Hpy188III TCNNGA 5 cut(s) 50, 637, 882, 991, 1111
Hpy8I GTNNAC 2 cut(s) 303, 755
Hpy99I CGWCG 7 cut(s) 110, 118, 247, 292, 301, 310, 878
HpyAV CCTTC 6 cut(s) 18, 361, 427, 440, 1042, 1188
HpyCH4V TGCA 8 cut(s) 82, 96, 124, 131, 376, 563, 632, 670
HpyF10VI GCNNNNNNNGC 6 cut(s) 572, 581, 600, 855, 928, 1086
HpyF3I CTNAG 3 cut(s) 383, 487, 1148
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 3 cut(s) 979, 1085, 1121
HspAI GCGC 1 cut(s) 293
KasI GGCGCC 1 cut(s) 292
Kzo9I GATC 1 cut(s) 236
LguI GCTCTTC 1 cut(s) 856
LmnI GCTCC 3 cut(s) 532, 825, 1128
Lsp1109I GCAGC 8 cut(s) 66, 571, 575, 578, 606, 764, 786, 1159
LweI GCATC 2 cut(s) 249, 887
MaeI CTAG 5 cut(s) 552, 576, 588, 807, 915
MaeIII GTNAC 2 cut(s) 711, 1135
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 8 cut(s) 155, 158, 161, 231, 318, 373, 752, 843
MhlI GDGCHC 3 cut(s) 488, 498, 911
MluCI AATT 6 cut(s) 90, 499, 641, 691, 743, 1029
Mly113I GGCGCC 1 cut(s) 293
MlyI GAGTC 2 cut(s) 161, 719
MmeI TCCRAC 3 cut(s) 135, 393, 720
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 3 cut(s) 597, 777, 1172
MspI CCGG 3 cut(s) 252, 335, 1100
MspR9I CCNGG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 1 cut(s) 765
MwoI GCNNNNNNNGC 6 cut(s) 572, 581, 600, 855, 928, 1086
NarI GGCGCC 1 cut(s) 293
NcoI CCATGG 1 cut(s) 1081
NdeII GATC 1 cut(s) 236
NheI GCTAGC 1 cut(s) 806
NlaIII CATG 3 cut(s) 979, 1085, 1121
NlaIV GGNNCC 4 cut(s) 294, 496, 534, 769
NmeAIII GCCGAG 2 cut(s) 463, 683
NmuCI GTSAC 2 cut(s) 711, 1135
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 2 cut(s) 979, 1121
PaeI GCATGC 1 cut(s) 1121
PciSI GCTCTTC 1 cut(s) 856
PcsI WCGNNNNNNNCGW 2 cut(s) 293, 296
PctI GAATGC 1 cut(s) 632
PfeI GAWTC 3 cut(s) 172, 198, 284
PfoI TCCNGGA 1 cut(s) 763
PleI GAGTC 2 cut(s) 160, 718
PluTI GGCGCC 1 cut(s) 296
PpsI GAGTC 2 cut(s) 160, 718
PpuMI RGGWCCY 1 cut(s) 321
PshBI ATTAAT 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 4 cut(s) 294, 496, 534, 769
PspOMI GGGCCC 1 cut(s) 494
PspPI GGNCC 4 cut(s) 321, 494, 495, 1004
PspPPI RGGWCCY 1 cut(s) 321
PstI CTGCAG 1 cut(s) 84
PstNI CAGNNNCTG 2 cut(s) 382, 777
PvuII CAGCTG 2 cut(s) 777, 1172
RsaI GTAC 2 cut(s) 302, 1037
RsaNI GTAC 2 cut(s) 301, 1036
SapI GCTCTTC 1 cut(s) 856
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 1 cut(s) 236
Sau96I GGNCC 4 cut(s) 321, 494, 495, 1004
SchI GAGTC 2 cut(s) 161, 719
ScrFI CCNGG 1 cut(s) 765
SduI GDGCHC 3 cut(s) 488, 498, 911
SfaNI GCATC 2 cut(s) 249, 887
SfcI CTRYAG 1 cut(s) 80
SfoI GGCGCC 1 cut(s) 294
SinI GGWCC 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SphI GCATGC 1 cut(s) 1121
Sse9I AATT 6 cut(s) 90, 499, 641, 691, 743, 1029
SspDI GGCGCC 1 cut(s) 292
SspMI CTAG 5 cut(s) 552, 576, 588, 807, 915
StyD4I CCNGG 1 cut(s) 763
StyI CCWWGG 1 cut(s) 1081
TaqI TCGA 4 cut(s) 207, 245, 287, 431
TasI AATT 6 cut(s) 90, 499, 641, 691, 743, 1029
TauI GCSGC 2 cut(s) 195, 538
TfiI GAWTC 3 cut(s) 172, 198, 284
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseFI GTSAC 2 cut(s) 711, 1135
TseI GCWGC 8 cut(s) 79, 563, 566, 584, 594, 774, 777, 1172
Tsp45I GTSAC 2 cut(s) 711, 1135
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 321
VspI ATTAAT 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 762
XapI RAATTY 2 cut(s) 641, 1029
XceI RCATGY 2 cut(s) 979, 1121
XspI CTAG 5 cut(s) 552, 576, 588, 807, 915
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.