Ninja-family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13740 |
| fragaria_vesca | FvH4_4g29910 FvH4_4g29910 |
| malus_domestica | MD13G1061900.v1.1 MD16G1060400.v1.1 |
| prunus_persica | Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1 |
| pyrus_communis | pycom13g05440 pycom16g05260 |
| rosa_chinensis | RchiOBHm_Chr4g0438171 |
| rosa_laevigata | RLG00000006382 |
| rosa_multiflora | Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00379310 |
| rosa_rugosa | Rorug04G0308200 |
| rosa_samantha | Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800 |
| rosa_wichuraiana | Rw0G006360 Rw0G016300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 295 |
| Acc36I | ACCTGC | 1 cut(s) | 688 |
| AccB1I | GGYRCC | 1 cut(s) | 292 |
| AcoI | YGGCCR | 1 cut(s) | 193 |
| AcsI | RAATTY | 2 cut(s) | 641, 1029 |
| AcuI | CTGAAG | 1 cut(s) | 837 |
| AcyI | GRCGYC | 1 cut(s) | 293 |
| AfaI | GTAC | 2 cut(s) | 302, 1037 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 202, 542, 764 |
| AgsI | TTSAA | 2 cut(s) | 172, 646 |
| AjnI | CCWGG | 1 cut(s) | 763 |
| AluBI | AGCT | 8 cut(s) | 11, 163, 229, 584, 726, 777, 1089, 1172 |
| AluI | AGCT | 8 cut(s) | 11, 163, 229, 584, 726, 777, 1089, 1172 |
| Alw26I | GTCTC | 2 cut(s) | 335, 706 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 382, 777 |
| Ama87I | CYCGRG | 1 cut(s) | 176 |
| AoxI | GGCC | 4 cut(s) | 193, 435, 494, 1003 |
| ApaI | GGGCCC | 1 cut(s) | 498 |
| ApeKI | GCWGC | 8 cut(s) | 79, 563, 566, 584, 594, 774, 777, 1172 |
| ApoI | RAATTY | 2 cut(s) | 641, 1029 |
| AseI | ATTAAT | 1 cut(s) | 89 |
| AspLEI | GCGC | 1 cut(s) | 295 |
| AspS9I | GGNCC | 4 cut(s) | 321, 494, 495, 1004 |
| AsuHPI | GGTGA | 2 cut(s) | 662, 794 |
| AsuNHI | GCTAGC | 1 cut(s) | 806 |
| AvaI | CYCGRG | 1 cut(s) | 176 |
| AvaII | GGWCC | 1 cut(s) | 321 |
| BaeGI | GKGCMC | 1 cut(s) | 498 |
| BanI | GGYRCC | 1 cut(s) | 292 |
| BanII | GRGCYC | 3 cut(s) | 488, 498, 911 |
| BbvCI | CCTCAGC | 1 cut(s) | 383 |
| BbvI | GCAGC | 8 cut(s) | 66, 571, 575, 578, 606, 764, 786, 1159 |
| BccI | CCATC | 1 cut(s) | 961 |
| BceAI | ACGGC | 6 cut(s) | 247, 280, 306, 543, 827, 1018 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 58, 92, 103, 137, 197, 231 |
| BciT130I | CCWGG | 1 cut(s) | 765 |
| BciVI | GTATCC | 1 cut(s) | 75 |
| BcoDI | GTCTC | 2 cut(s) | 335, 706 |
| BfaI | CTAG | 5 cut(s) | 552, 576, 588, 807, 915 |
| BfmI | CTRYAG | 1 cut(s) | 80 |
| BfoI | RGCGCY | 1 cut(s) | 296 |
| BfuAI | ACCTGC | 1 cut(s) | 688 |
| BfuI | GTATCC | 1 cut(s) | 75 |
| Bme1390I | CCNGG | 1 cut(s) | 765 |
| Bme18I | GGWCC | 1 cut(s) | 321 |
| BmeT110I | CYCGRG | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 4 cut(s) | 321, 494, 495, 1004 |
| BmiI | GGNNCC | 4 cut(s) | 294, 496, 534, 769 |
| BmrFI | CCNGG | 1 cut(s) | 765 |
| BmsI | GCATC | 2 cut(s) | 249, 887 |
| BmtI | GCTAGC | 1 cut(s) | 810 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 742, 774 |
| BpmI | CTGGAG | 2 cut(s) | 185, 1143 |
| Bpu10I | CCTNAGC | 1 cut(s) | 383 |
| BpuEI | CTTGAG | 1 cut(s) | 500 |
| BsaBI | GATNNNNATC | 1 cut(s) | 63 |
| BsaHI | GRCGYC | 1 cut(s) | 293 |
| BsaI | GGTCTC | 1 cut(s) | 706 |
| BsaJI | CCNNGG | 1 cut(s) | 1081 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 338, 368, 455, 485, 1044, 1074 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 202, 542, 764 |
| Bse1I | ACTGG | 1 cut(s) | 814 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| Bse8I | GATNNNNATC | 1 cut(s) | 63 |
| BseBI | CCWGG | 1 cut(s) | 765 |
| BseDI | CCNNGG | 1 cut(s) | 1081 |
| BseGI | GGATG | 4 cut(s) | 163, 741, 878, 972 |
| BseJI | GATNNNNATC | 1 cut(s) | 63 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 202, 542, 764 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BseMII | CTCAG | 2 cut(s) | 374, 501 |
| BseNI | ACTGG | 1 cut(s) | 814 |
| BseRI | GAGGAG | 5 cut(s) | 362, 365, 421, 476, 479 |
| BseSI | GKGCMC | 1 cut(s) | 498 |
| BseX3I | CGGCCG | 1 cut(s) | 193 |
| BseXI | GCAGC | 8 cut(s) | 66, 571, 575, 578, 606, 764, 786, 1159 |
| Bsh1285I | CGRYCG | 1 cut(s) | 196 |
| BshFI | GGCC | 4 cut(s) | 195, 437, 496, 1005 |
| BshNI | GGYRCC | 1 cut(s) | 292 |
| BsiEI | CGRYCG | 1 cut(s) | 196 |
| BsiHKCI | CYCGRG | 1 cut(s) | 176 |
| BsiSI | CCGG | 3 cut(s) | 252, 335, 1100 |
| BslFI | GGGAC | 2 cut(s) | 287, 1013 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 202, 542, 764 |
| BsmAI | GTCTC | 2 cut(s) | 335, 706 |
| BsmBI | CGTCTC | 1 cut(s) | 335 |
| BsmFI | GGGAC | 2 cut(s) | 287, 1013 |
| BsmI | GAATGC | 1 cut(s) | 632 |
| BsnI | GGCC | 4 cut(s) | 195, 437, 496, 1005 |
| Bso31I | GGTCTC | 1 cut(s) | 706 |
| BsoBI | CYCGRG | 1 cut(s) | 176 |
| Bsp120I | GGGCCC | 1 cut(s) | 494 |
| Bsp1286I | GDGCHC | 3 cut(s) | 488, 498, 911 |
| Bsp143I | GATC | 1 cut(s) | 236 |
| Bsp19I | CCATGG | 1 cut(s) | 1081 |
| BspANI | GGCC | 4 cut(s) | 195, 437, 496, 1005 |
| BspCNI | CTCAG | 2 cut(s) | 375, 500 |
| BspLI | GGNNCC | 4 cut(s) | 294, 496, 534, 769 |
| BspMAI | CTGCAG | 1 cut(s) | 84 |
| BspMI | ACCTGC | 1 cut(s) | 688 |
| BspOI | GCTAGC | 1 cut(s) | 810 |
| BspQI | GCTCTTC | 1 cut(s) | 856 |
| BspT107I | GGYRCC | 1 cut(s) | 292 |
| BspTNI | GGTCTC | 1 cut(s) | 706 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| BsrI | ACTGG | 1 cut(s) | 814 |
| BssECI | CCNNGG | 1 cut(s) | 1081 |
| BssMI | GATC | 1 cut(s) | 236 |
| BssNI | GRCGYC | 1 cut(s) | 293 |
| BssT1I | CCWWGG | 1 cut(s) | 1081 |
| Bst2UI | CCWGG | 1 cut(s) | 765 |
| Bst6I | CTCTTC | 5 cut(s) | 144, 331, 356, 765, 856 |
| BstACI | GRCGYC | 1 cut(s) | 293 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 572 |
| BstC8I | GCNNGC | 3 cut(s) | 582, 808, 1119 |
| BstDEI | CTNAG | 3 cut(s) | 383, 487, 1148 |
| BstDSI | CCRYGG | 1 cut(s) | 1081 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 762 |
| BstF5I | GGATG | 4 cut(s) | 163, 741, 878, 972 |
| BstH2I | RGCGCY | 1 cut(s) | 296 |
| BstHHI | GCGC | 1 cut(s) | 295 |
| BstKTI | GATC | 1 cut(s) | 239 |
| BstMAI | GTCTC | 2 cut(s) | 335, 706 |
| BstMBI | GATC | 1 cut(s) | 236 |
| BstMCI | CGRYCG | 1 cut(s) | 196 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 572, 581, 600, 855, 928, 1086 |
| BstNI | CCWGG | 1 cut(s) | 765 |
| BstNSI | RCATGY | 2 cut(s) | 979, 1121 |
| BstSCI | CCNGG | 1 cut(s) | 763 |
| BstSFI | CTRYAG | 1 cut(s) | 80 |
| BstSLI | GKGCMC | 1 cut(s) | 498 |
| BstV1I | GCAGC | 8 cut(s) | 66, 571, 575, 578, 606, 764, 786, 1159 |
| BstZI | CGGCCG | 1 cut(s) | 193 |
| BsuI | GTATCC | 1 cut(s) | 75 |
| BsuRI | GGCC | 4 cut(s) | 195, 437, 496, 1005 |
| BtgI | CCRYGG | 1 cut(s) | 1081 |
| BtgZI | GCGATG | 1 cut(s) | 1146 |
| BtsCI | GGATG | 4 cut(s) | 163, 741, 878, 972 |
| BveI | ACCTGC | 1 cut(s) | 688 |
| Cac8I | GCNNGC | 3 cut(s) | 582, 808, 1119 |
| CaiI | CAGNNNCTG | 2 cut(s) | 382, 777 |
| CfoI | GCGC | 1 cut(s) | 295 |
| Cfr13I | GGNCC | 4 cut(s) | 321, 494, 495, 1004 |
| CseI | GACGC | 4 cut(s) | 116, 124, 388, 884 |
| Csp6I | GTAC | 2 cut(s) | 301, 1036 |
| CviAII | CATG | 3 cut(s) | 976, 1082, 1118 |
| CviQI | GTAC | 2 cut(s) | 301, 1036 |
| DdeI | CTNAG | 3 cut(s) | 383, 487, 1148 |
| DinI | GGCGCC | 1 cut(s) | 294 |
| DpnI | GATC | 1 cut(s) | 238 |
| DpnII | GATC | 1 cut(s) | 236 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 295 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 295 |
| EaeI | YGGCCR | 1 cut(s) | 193 |
| EagI | CGGCCG | 1 cut(s) | 193 |
| Eam1104I | CTCTTC | 5 cut(s) | 144, 331, 356, 765, 856 |
| EarI | CTCTTC | 5 cut(s) | 144, 331, 356, 765, 856 |
| EciI | GGCGGA | 5 cut(s) | 353, 545, 630, 722, 735 |
| EclXI | CGGCCG | 1 cut(s) | 193 |
| Eco130I | CCWWGG | 1 cut(s) | 1081 |
| Eco24I | GRGCYC | 3 cut(s) | 488, 498, 911 |
| Eco31I | GGTCTC | 1 cut(s) | 706 |
| Eco47I | GGWCC | 1 cut(s) | 321 |
| Eco52I | CGGCCG | 1 cut(s) | 193 |
| Eco57I | CTGAAG | 1 cut(s) | 837 |
| Eco88I | CYCGRG | 1 cut(s) | 176 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 762 |
| EcoO109I | RGGNCCY | 1 cut(s) | 321 |
| EcoRI | GAATTC | 1 cut(s) | 1029 |
| EcoRII | CCWGG | 1 cut(s) | 763 |
| EcoT14I | CCWWGG | 1 cut(s) | 1081 |
| EcoT22I | ATGCAT | 1 cut(s) | 634 |
| EcoT38I | GRGCYC | 3 cut(s) | 488, 498, 911 |
| EgeI | GGCGCC | 1 cut(s) | 294 |
| EheI | GGCGCC | 1 cut(s) | 294 |
| ErhI | CCWWGG | 1 cut(s) | 1081 |
| Esp3I | CGTCTC | 1 cut(s) | 335 |
| FaeI | CATG | 3 cut(s) | 979, 1085, 1121 |
| FaiI | YATR | 9 cut(s) | 129, 902, 977, 1044, 1076, 1078, 1083, 1119, 1155 |
| FaqI | GGGAC | 2 cut(s) | 287, 1013 |
| FatI | CATG | 3 cut(s) | 975, 1081, 1117 |
| FauI | CCCGC | 2 cut(s) | 499, 811 |
| FokI | GGATG | 4 cut(s) | 170, 748, 865, 979 |
| FriOI | GRGCYC | 3 cut(s) | 488, 498, 911 |
| FspBI | CTAG | 5 cut(s) | 552, 576, 588, 807, 915 |
| GlaI | GCGC | 1 cut(s) | 294 |
| GsuI | CTGGAG | 2 cut(s) | 185, 1143 |
| HaeII | RGCGCY | 1 cut(s) | 296 |
| HaeIII | GGCC | 4 cut(s) | 195, 437, 496, 1005 |
| HapII | CCGG | 3 cut(s) | 252, 335, 1100 |
| HgaI | GACGC | 4 cut(s) | 116, 124, 388, 884 |
| HhaI | GCGC | 1 cut(s) | 295 |
| Hin1I | GRCGYC | 1 cut(s) | 293 |
| Hin1II | CATG | 3 cut(s) | 979, 1085, 1121 |
| Hin6I | GCGC | 1 cut(s) | 293 |
| HinP1I | GCGC | 1 cut(s) | 293 |
| HindIII | AAGCTT | 1 cut(s) | 1087 |
| HinfI | GANTC | 5 cut(s) | 152, 172, 198, 284, 710 |
| HpaII | CCGG | 3 cut(s) | 252, 335, 1100 |
| HphI | GGTGA | 2 cut(s) | 662, 794 |
| Hpy166II | GTNNAC | 2 cut(s) | 303, 755 |
| Hpy188I | TCNGA | 6 cut(s) | 69, 157, 236, 415, 525, 742 |
| Hpy188III | TCNNGA | 5 cut(s) | 50, 637, 882, 991, 1111 |
| Hpy8I | GTNNAC | 2 cut(s) | 303, 755 |
| Hpy99I | CGWCG | 7 cut(s) | 110, 118, 247, 292, 301, 310, 878 |
| HpyAV | CCTTC | 6 cut(s) | 18, 361, 427, 440, 1042, 1188 |
| HpyCH4V | TGCA | 8 cut(s) | 82, 96, 124, 131, 376, 563, 632, 670 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 572, 581, 600, 855, 928, 1086 |
| HpyF3I | CTNAG | 3 cut(s) | 383, 487, 1148 |
| Hsp92I | GRCGYC | 1 cut(s) | 293 |
| Hsp92II | CATG | 3 cut(s) | 979, 1085, 1121 |
| HspAI | GCGC | 1 cut(s) | 293 |
| KasI | GGCGCC | 1 cut(s) | 292 |
| Kzo9I | GATC | 1 cut(s) | 236 |
| LguI | GCTCTTC | 1 cut(s) | 856 |
| LmnI | GCTCC | 3 cut(s) | 532, 825, 1128 |
| Lsp1109I | GCAGC | 8 cut(s) | 66, 571, 575, 578, 606, 764, 786, 1159 |
| LweI | GCATC | 2 cut(s) | 249, 887 |
| MaeI | CTAG | 5 cut(s) | 552, 576, 588, 807, 915 |
| MaeIII | GTNAC | 2 cut(s) | 711, 1135 |
| MalI | GATC | 1 cut(s) | 238 |
| MboI | GATC | 1 cut(s) | 236 |
| MboII | GAAGA | 8 cut(s) | 155, 158, 161, 231, 318, 373, 752, 843 |
| MhlI | GDGCHC | 3 cut(s) | 488, 498, 911 |
| MluCI | AATT | 6 cut(s) | 90, 499, 641, 691, 743, 1029 |
| Mly113I | GGCGCC | 1 cut(s) | 293 |
| MlyI | GAGTC | 2 cut(s) | 161, 719 |
| MmeI | TCCRAC | 3 cut(s) | 135, 393, 720 |
| Mph1103I | ATGCAT | 1 cut(s) | 634 |
| MseI | TTAA | 1 cut(s) | 89 |
| MspA1I | CMGCKG | 3 cut(s) | 597, 777, 1172 |
| MspI | CCGG | 3 cut(s) | 252, 335, 1100 |
| MspR9I | CCNGG | 1 cut(s) | 765 |
| Mva1269I | GAATGC | 1 cut(s) | 632 |
| MvaI | CCWGG | 1 cut(s) | 765 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 572, 581, 600, 855, 928, 1086 |
| NarI | GGCGCC | 1 cut(s) | 293 |
| NcoI | CCATGG | 1 cut(s) | 1081 |
| NdeII | GATC | 1 cut(s) | 236 |
| NheI | GCTAGC | 1 cut(s) | 806 |
| NlaIII | CATG | 3 cut(s) | 979, 1085, 1121 |
| NlaIV | GGNNCC | 4 cut(s) | 294, 496, 534, 769 |
| NmeAIII | GCCGAG | 2 cut(s) | 463, 683 |
| NmuCI | GTSAC | 2 cut(s) | 711, 1135 |
| NsiI | ATGCAT | 1 cut(s) | 634 |
| NspI | RCATGY | 2 cut(s) | 979, 1121 |
| PaeI | GCATGC | 1 cut(s) | 1121 |
| PciSI | GCTCTTC | 1 cut(s) | 856 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 293, 296 |
| PctI | GAATGC | 1 cut(s) | 632 |
| PfeI | GAWTC | 3 cut(s) | 172, 198, 284 |
| PfoI | TCCNGGA | 1 cut(s) | 763 |
| PleI | GAGTC | 2 cut(s) | 160, 718 |
| PluTI | GGCGCC | 1 cut(s) | 296 |
| PpsI | GAGTC | 2 cut(s) | 160, 718 |
| PpuMI | RGGWCCY | 1 cut(s) | 321 |
| PshBI | ATTAAT | 1 cut(s) | 89 |
| Psp5II | RGGWCCY | 1 cut(s) | 321 |
| Psp6I | CCWGG | 1 cut(s) | 763 |
| PspGI | CCWGG | 1 cut(s) | 763 |
| PspN4I | GGNNCC | 4 cut(s) | 294, 496, 534, 769 |
| PspOMI | GGGCCC | 1 cut(s) | 494 |
| PspPI | GGNCC | 4 cut(s) | 321, 494, 495, 1004 |
| PspPPI | RGGWCCY | 1 cut(s) | 321 |
| PstI | CTGCAG | 1 cut(s) | 84 |
| PstNI | CAGNNNCTG | 2 cut(s) | 382, 777 |
| PvuII | CAGCTG | 2 cut(s) | 777, 1172 |
| RsaI | GTAC | 2 cut(s) | 302, 1037 |
| RsaNI | GTAC | 2 cut(s) | 301, 1036 |
| SapI | GCTCTTC | 1 cut(s) | 856 |
| SaqAI | TTAA | 1 cut(s) | 89 |
| Sau3AI | GATC | 1 cut(s) | 236 |
| Sau96I | GGNCC | 4 cut(s) | 321, 494, 495, 1004 |
| SchI | GAGTC | 2 cut(s) | 161, 719 |
| ScrFI | CCNGG | 1 cut(s) | 765 |
| SduI | GDGCHC | 3 cut(s) | 488, 498, 911 |
| SfaNI | GCATC | 2 cut(s) | 249, 887 |
| SfcI | CTRYAG | 1 cut(s) | 80 |
| SfoI | GGCGCC | 1 cut(s) | 294 |
| SinI | GGWCC | 1 cut(s) | 321 |
| SmlI | CTYRAG | 1 cut(s) | 479 |
| SmoI | CTYRAG | 1 cut(s) | 479 |
| SphI | GCATGC | 1 cut(s) | 1121 |
| Sse9I | AATT | 6 cut(s) | 90, 499, 641, 691, 743, 1029 |
| SspDI | GGCGCC | 1 cut(s) | 292 |
| SspMI | CTAG | 5 cut(s) | 552, 576, 588, 807, 915 |
| StyD4I | CCNGG | 1 cut(s) | 763 |
| StyI | CCWWGG | 1 cut(s) | 1081 |
| TaqI | TCGA | 4 cut(s) | 207, 245, 287, 431 |
| TasI | AATT | 6 cut(s) | 90, 499, 641, 691, 743, 1029 |
| TauI | GCSGC | 2 cut(s) | 195, 538 |
| TfiI | GAWTC | 3 cut(s) | 172, 198, 284 |
| Tru1I | TTAA | 1 cut(s) | 89 |
| Tru9I | TTAA | 1 cut(s) | 89 |
| TseFI | GTSAC | 2 cut(s) | 711, 1135 |
| TseI | GCWGC | 8 cut(s) | 79, 563, 566, 584, 594, 774, 777, 1172 |
| Tsp45I | GTSAC | 2 cut(s) | 711, 1135 |
| TspDTI | ATGAA | 1 cut(s) | 30 |
| TspGWI | ACGGA | 1 cut(s) | 359 |
| VpaK11BI | GGWCC | 1 cut(s) | 321 |
| VspI | ATTAAT | 1 cut(s) | 89 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 762 |
| XapI | RAATTY | 2 cut(s) | 641, 1029 |
| XceI | RCATGY | 2 cut(s) | 979, 1121 |
| XspI | CTAG | 5 cut(s) | 552, 576, 588, 807, 915 |
| Zsp2I | ATGCAT | 1 cut(s) | 634 |