Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010347

Physical Location & Seq

Genomic Coordinates Reverse (-)

28775842 .. 28779465

Gene Structure 3624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G288000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGAAAACATGGGTGAAGCTAATGAAGAGCGAAGGAGAGCAATGGAATATCTGTCTTTGCAAATTGACAAGTACCCAAGAGATCTGCTGCAGAGATTAATGTGTAGCAGCAACACACAGCAGTCGCAGTATGCAGAGCCTAGTGAAGAAGAAGAGTCAGATGAGCTGGAGTTAAATCTCGGGCTTTCTTTGGGTGGCCGATTTGGGGTCGACAAGAGTTCCAAGAAAAAGCTAATCCGATCTTCATCCATTGCCGGAACTATGCCGTTTGTGAGAGACGACAACGACCCAACGACACCAGCGCAGGTGTCGTGCCCGGCGAGTCTGATGAGGACATCTTCACTTCCCACGGAGACAGAGGAGGAGTGGAGGAAGCGGAAGGAGTTGCAGACTCTGAGACGATTGGAGGCCAAAAGAAGAAGGTCAGAGAAGCAGAGGAACTCAAACTCAAGCAAGGCTGAGAAAGAAGGGGTCTCCTTGGAGGAGGAAAGGCGAGAACTTGAGGGGGGTCCCAATTTGAGGGATAAGCAGCAGCAGCCGTACGATGGGGCTAGTAGGGTTAATCGGACGGTAGGTCCGCCTTTTGTGTTGCCAAGTTGGGCTGCAGCCGCAGCTGCTAGGCAAGCTTCCGTTGGTGGTGGAGTGGATGCACTGGAAAAATTGAAAGCTGAGATTTTGGGTAGTTTACAGGGATTTGGAGGACAACCCACTTCGCAGGGTTCGATGGAGTCACAAGGAGGAAGCTCGTCAGGGATGTCAGAATTGGAGAGTAAACCTCTTCAAGGATCCAGCAATTGTGGTGAAGCAAGAAGCCCTGCTAGTAATCAGTTGTTGCAAGAACGAAGTAATCAAGACACCGTGGGCTCTTCAGGGACAGGGACAGCTGAGGATGCATCCAGAGCTTCCAGAGCTGATGTAGAAAGCAAGTGTAAGAAGCCAAATTCTTCAGAGAAAAGCGGACGGGAAACGAGGACGAATGCTATGGAGGACATGCCTTGTGTTTTCACAAAAGGAGACGGTCCTAATGGTAGAAAAGTAGAAGGAATCCTATACAGATATGGGAAGGGAGAGGAAGTAAGAATAATGTGTGTTTGCCATGGCAGCTTTCTCTCTCCAGCAGAGTTCGTGAAGCACGCAGGAGGAAGTGATGTCACTCACCCACTTAGGCATATAGTTGTAAACCCTGCTGCCACTTCCTTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

402

Amino Acids

43.67

Weight (kDa)

6.25

Isoelectric Point (pI)

67.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13740
fragaria_vesca	FvH4_4g29910 FvH4_4g29910
malus_domestica	MD13G1061900.v1.1 MD16G1060400.v1.1
prunus_persica	Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1
pyrus_communis	pycom13g05440 pycom16g05260
rosa_chinensis	RchiOBHm_Chr4g0438171
rosa_laevigata	RLG00000006382
rosa_multiflora	Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379310
rosa_rugosa	Rorug04G0308200
rosa_samantha	Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800
rosa_wichuraiana	Rw0G006360 Rw0G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	4 cut(s)	376, 578, 609, 957
AclWI	GGATC	2 cut(s)	780, 793
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	940
AcuI	CTGAAG	2 cut(s)	852, 930
AfaI	GTAC	2 cut(s)	74, 542
AfiI	CCNNNNNNNGG	4 cut(s)	205, 519, 545, 782
AgsI	TTSAA	2 cut(s)	664, 782
AhdI	GACNNNNNGTC	1 cut(s)	573
Alw26I	GTCTC	5 cut(s)	270, 347, 391, 478, 1008
AlwI	GGATC	2 cut(s)	780, 793
AlwNI	CAGNNNCTG	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	2 cut(s)	196, 408
ApoI	RAATTY	1 cut(s)	940
AseI	ATTAAT	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	3 cut(s)	509, 575, 1019
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	26, 812, 1148
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	3 cut(s)	509, 575, 1019
BaeGI	GKGCMC	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	785
BanII	GRGCYC	1 cut(s)	866
BbvCI	CCTCAGC	1 cut(s)	885
BccI	CCATC	2 cut(s)	539, 718
BceAI	ACGGC	2 cut(s)	250, 523
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	5 cut(s)	270, 347, 391, 478, 1008
BfaI	CTAG	4 cut(s)	141, 552, 618, 819
BfmI	CTRYAG	2 cut(s)	89, 603
BfuAI	ACCTGC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	3 cut(s)	509, 575, 1019
BmeRI	GACNNNNNGTC	1 cut(s)	573
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	3 cut(s)	509, 575, 1019
BmiI	GGNNCC	3 cut(s)	510, 511, 787
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	3 cut(s)	637, 880, 902
BplI	GAGNNNNNCTC	2 cut(s)	760, 792
BpmI	CTGGAG	2 cut(s)	188, 1098
Bpu10I	CCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	2 cut(s)	433, 521
BpuMI	CCSGG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	4 cut(s)	348, 477, 858, 1096
BsaXI	ACNNNNNCTCC	2 cut(s)	1059, 1089
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 519, 545, 782
Bse1I	ACTGG	1 cut(s)	657
Bse3DI	GCAATG	2 cut(s)	48, 249
Bse8I	GATNNNNATC	1 cut(s)	244
BseDI	CCNNGG	4 cut(s)	348, 477, 858, 1096
BseGI	GGATG	5 cut(s)	245, 652, 759, 893, 895
BseJI	GATNNNNATC	1 cut(s)	244
BseLI	CCNNNNNNNGG	4 cut(s)	205, 519, 545, 782
BseMI	GCAATG	2 cut(s)	48, 249
BseMII	CTCAG	4 cut(s)	386, 450, 660, 876
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	3 cut(s)	374, 377, 497
BseSI	GKGCMC	1 cut(s)	317
BshFI	GGCC	2 cut(s)	198, 410
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	255, 317
BsiWI	CGTACG	1 cut(s)	540
BslFI	GGGAC	3 cut(s)	495, 886, 892
BslI	CCNNNNNNNGG	4 cut(s)	205, 519, 545, 782
BsmAI	GTCTC	5 cut(s)	270, 347, 391, 478, 1008
BsmBI	CGTCTC	3 cut(s)	270, 391, 1008
BsmFI	GGGAC	3 cut(s)	495, 886, 892
BsmI	GAATGC	1 cut(s)	982
BsnI	GGCC	2 cut(s)	198, 410
Bso31I	GGTCTC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	317, 866
Bsp143I	GATC	3 cut(s)	82, 239, 785
Bsp19I	CCATGG	1 cut(s)	1096
BspACI	CCGC	4 cut(s)	376, 578, 609, 957
BspANI	GGCC	2 cut(s)	198, 410
BspCNI	CTCAG	4 cut(s)	387, 451, 661, 877
BspLI	GGNNCC	3 cut(s)	510, 511, 787
BspMAI	CTGCAG	2 cut(s)	93, 607
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	780, 793
BspQI	GCTCTTC	2 cut(s)	21, 871
BspTNI	GGTCTC	1 cut(s)	478
BsrDI	GCAATG	2 cut(s)	48, 249
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	4 cut(s)	348, 477, 858, 1096
BssMI	GATC	3 cut(s)	82, 239, 785
BssT1I	CCWWGG	2 cut(s)	477, 1096
Bst4CI	ACNGT	3 cut(s)	571, 859, 1019
Bst6I	CTCTTC	4 cut(s)	21, 147, 783, 871
BstC8I	GCNNGC	2 cut(s)	624, 1134
BstDEI	CTNAG	5 cut(s)	395, 459, 669, 885, 1163
BstDSI	CCRYGG	3 cut(s)	348, 858, 1096
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	5 cut(s)	245, 652, 759, 893, 895
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	3 cut(s)	85, 242, 788
BstMAI	GTCTC	5 cut(s)	270, 347, 391, 478, 1008
BstMBI	GATC	3 cut(s)	82, 239, 785
BstMWI	GCNNNNNNNGC	9 cut(s)	535, 608, 611, 614, 623, 890, 899, 908, 1101
BstNSI	RCATGY	1 cut(s)	994
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	2 cut(s)	89, 603
BstSLI	GKGCMC	1 cut(s)	317
BstX2I	RGATCY	2 cut(s)	82, 785
BstYI	RGATCY	2 cut(s)	82, 785
BsuRI	GGCC	2 cut(s)	198, 410
BtgI	CCRYGG	3 cut(s)	348, 858, 1096
BtsCI	GGATG	5 cut(s)	245, 652, 759, 893, 895
BtsIMutI	CAGTG	1 cut(s)	650
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	624, 1134
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	3 cut(s)	509, 575, 1019
Csp6I	GTAC	2 cut(s)	73, 541
CviAII	CATG	3 cut(s)	10, 991, 1097
CviQI	GTAC	2 cut(s)	73, 541
DdeI	CTNAG	5 cut(s)	395, 459, 669, 885, 1163
DpnI	GATC	3 cut(s)	84, 241, 787
DpnII	GATC	3 cut(s)	82, 239, 785
DriI	GACNNNNNGTC	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	4 cut(s)	21, 147, 783, 871
Eam1105I	GACNNNNNGTC	1 cut(s)	573
EarI	CTCTTC	4 cut(s)	21, 147, 783, 871
EciI	GGCGGA	1 cut(s)	567
Eco130I	CCWWGG	2 cut(s)	477, 1096
Eco24I	GRGCYC	1 cut(s)	866
Eco31I	GGTCTC	1 cut(s)	478
Eco47I	GGWCC	3 cut(s)	509, 575, 1019
Eco57I	CTGAAG	2 cut(s)	852, 930
Eco88I	CYCGRG	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	509
EcoT14I	CCWWGG	2 cut(s)	477, 1096
EcoT22I	ATGCAT	1 cut(s)	895
EcoT38I	GRGCYC	1 cut(s)	866
ErhI	CCWWGG	2 cut(s)	477, 1096
Esp3I	CGTCTC	3 cut(s)	270, 391, 1008
FaeI	CATG	3 cut(s)	13, 994, 1100
FaqI	GGGAC	3 cut(s)	495, 886, 892
FatI	CATG	3 cut(s)	9, 990, 1096
FblI	GTMKAC	1 cut(s)	210
FokI	GGATG	5 cut(s)	232, 659, 766, 880, 902
FriOI	GRGCYC	1 cut(s)	866
FspBI	CTAG	4 cut(s)	141, 552, 618, 819
GlaI	GCGC	1 cut(s)	303
GsuI	CTGGAG	2 cut(s)	188, 1098
HaeIII	GGCC	2 cut(s)	198, 410
HapII	CCGG	2 cut(s)	255, 317
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	13, 994, 1100
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	5 cut(s)	155, 322, 391, 728, 1044
HpaII	CCGG	2 cut(s)	255, 317
HphI	GGTGA	3 cut(s)	26, 812, 1148
Hpy166II	GTNNAC	4 cut(s)	211, 686, 773, 1180
Hpy188I	TCNGA	8 cut(s)	160, 239, 327, 396, 427, 567, 760, 949
Hpy188III	TCNNGA	4 cut(s)	851, 897, 906, 1126
Hpy8I	GTNNAC	4 cut(s)	211, 686, 773, 1180
HpyAV	CCTTC	6 cut(s)	27, 373, 414, 461, 1034, 1057
HpyCH4III	ACNGT	3 cut(s)	571, 859, 1019
HpyCH4V	TGCA	8 cut(s)	61, 91, 134, 388, 605, 650, 835, 893
HpyF10VI	GCNNNNNNNGC	9 cut(s)	535, 608, 611, 614, 623, 890, 899, 908, 1101
HpyF3I	CTNAG	5 cut(s)	395, 459, 669, 885, 1163
Hsp92II	CATG	3 cut(s)	13, 994, 1100
HspAI	GCGC	1 cut(s)	302
KflI	GGGWCCC	1 cut(s)	509
Kzo9I	GATC	3 cut(s)	82, 239, 785
LguI	GCTCTTC	2 cut(s)	21, 871
LweI	GCATC	3 cut(s)	637, 880, 902
MaeI	CTAG	4 cut(s)	141, 552, 618, 819
MaeIII	GTNAC	2 cut(s)	729, 1150
MalI	GATC	3 cut(s)	84, 241, 787
MboI	GATC	3 cut(s)	82, 239, 785
MfeI	CAATTG	1 cut(s)	793
MflI	RGATCY	2 cut(s)	82, 785
MhlI	GDGCHC	2 cut(s)	317, 866
MluCI	AATT	6 cut(s)	63, 514, 659, 761, 793, 940
MlyI	GAGTC	4 cut(s)	164, 331, 385, 737
Mph1103I	ATGCAT	1 cut(s)	895
MseI	TTAA	3 cut(s)	98, 173, 561
MspA1I	CMGCKG	2 cut(s)	614, 884
MspI	CCGG	2 cut(s)	255, 317
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	793
Mva1269I	GAATGC	1 cut(s)	982
MwoI	GCNNNNNNNGC	9 cut(s)	535, 608, 611, 614, 623, 890, 899, 908, 1101
NciI	CCSGG	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	1096
NdeII	GATC	3 cut(s)	82, 239, 785
NlaIII	CATG	3 cut(s)	13, 994, 1100
NlaIV	GGNNCC	3 cut(s)	510, 511, 787
NmuCI	GTSAC	2 cut(s)	729, 1150
NsiI	ATGCAT	1 cut(s)	895
NspI	RCATGY	1 cut(s)	994
PaqCI	CACCTGC	1 cut(s)	295
PciSI	GCTCTTC	2 cut(s)	21, 871
PcsI	WCGNNNNNNNCGW	2 cut(s)	317, 719
PctI	GAATGC	1 cut(s)	982
PfeI	GAWTC	1 cut(s)	1044
Pfl23II	CGTACG	1 cut(s)	540
PleI	GAGTC	4 cut(s)	163, 330, 385, 736
PpsI	GAGTC	4 cut(s)	163, 330, 385, 736
PpuMI	RGGWCCY	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	509
PspLI	CGTACG	1 cut(s)	540
PspN4I	GGNNCC	3 cut(s)	510, 511, 787
PspPI	GGNCC	3 cut(s)	509, 575, 1019
PspPPI	RGGWCCY	1 cut(s)	509
PstI	CTGCAG	2 cut(s)	93, 607
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	82, 785
PvuII	CAGCTG	2 cut(s)	614, 884
RsaI	GTAC	2 cut(s)	74, 542
RsaNI	GTAC	2 cut(s)	73, 541
SalI	GTCGAC	1 cut(s)	209
SapI	GCTCTTC	2 cut(s)	21, 871
SaqAI	TTAA	3 cut(s)	98, 173, 561
Sau3AI	GATC	3 cut(s)	82, 239, 785
Sau96I	GGNCC	3 cut(s)	509, 575, 1019
SchI	GAGTC	4 cut(s)	164, 331, 385, 737
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	317, 866
SfaNI	GCATC	3 cut(s)	637, 880, 902
SfcI	CTRYAG	2 cut(s)	89, 603
SinI	GGWCC	3 cut(s)	509, 575, 1019
SmlI	CTYRAG	2 cut(s)	448, 500
SmoI	CTYRAG	2 cut(s)	448, 500
Sse9I	AATT	6 cut(s)	63, 514, 659, 761, 793, 940
SsiI	CCGC	4 cut(s)	376, 578, 609, 957
SspMI	CTAG	4 cut(s)	141, 552, 618, 819
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	477, 1096
TaaI	ACNGT	3 cut(s)	571, 859, 1019
TaqI	TCGA	2 cut(s)	210, 722
TasI	AATT	6 cut(s)	63, 514, 659, 761, 793, 940
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	1044
Tru1I	TTAA	3 cut(s)	98, 173, 561
Tru9I	TTAA	3 cut(s)	98, 173, 561
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	2 cut(s)	729, 1150
Tsp45I	GTSAC	2 cut(s)	729, 1150
TspDTI	ATGAA	2 cut(s)	39, 234
TspGWI	ACGGA	2 cut(s)	365, 619
TspRI	CASTG	1 cut(s)	657
VpaK11BI	GGWCC	3 cut(s)	509, 575, 1019
VspI	ATTAAT	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	1 cut(s)	940
XceI	RCATGY	1 cut(s)	994
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	4 cut(s)	141, 552, 618, 819
Zsp2I	ATGCAT	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.