Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015132.1

Orthogroup ID

OG0010347

Physical Location & Seq

Genomic Coordinates Reverse (-)

1213 .. 4480

Gene Structure 3268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015132.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgggcgaagctaacgaagggaggaggcgagcaatggagaacctgacgtttcagatggataagtacccgagagatctgctgcagagattaatgtgcagaaacgacgcgtcgcagtcgaaatatgaggaggaggaggagctggagctgaatctggggctgtctttgggaggaagattcggagtagacaggagcgagaaaagcaagcttgtccgatcttcctcgattgcggtgactatgccgttttgtagggaagagaacgacgactcggcggctccggcggcggccaaggcggcgtcgtacgctgggctgatgagggcgtcgtcgcttccgacggagacggaggaggagtggaggaagaggaaggagttgcagacgctgcggcggttggcggcgaagcggaggaggtccgagaagcagaggaacagcagcaaggaggaagaggaaaggcgtgaatttgaggtgggacccacttcaggggtgtgggcgaataatccggcagtggtgcagccgttttgggcggctgtgacggcggcgaggcaagcggttggtggtggcagtggaggagtggatcccttggccaagggtaaaaatgacattttgggtgactttcaggggtttggcctgcagcccagttctcagggctcggtggagtcacaaggtggtggaagctcgtcggggttgtcagaaatggagagtaaacctcttcaagctaacaagcccaatttatgctttaagcccaattcatatttggaggcaaattacacccgcgaacatcacgccatgcacgtggacccaagccacattcatgcacttggggcttacaagaatgggtgtggtatggaaggtaacggaattgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

286

Amino Acids

31.34

Weight (kDa)

6.57

Isoelectric Point (pI)

68.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13740
fragaria_vesca	FvH4_4g29910 FvH4_4g29910
malus_domestica	MD13G1061900.v1.1 MD16G1060400.v1.1
prunus_persica	Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1
pyrus_communis	pycom13g05440 pycom16g05260
rosa_chinensis	RchiOBHm_Chr4g0438171
rosa_laevigata	RLG00000006382
rosa_multiflora	Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379310
rosa_rugosa	Rorug04G0308200
rosa_samantha	Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800
rosa_wichuraiana	Rw0G006360 Rw0G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	2 cut(s)	107, 768
AclWI	GGATC	2 cut(s)	563, 576
AcoI	YGGCCR	2 cut(s)	282, 576
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	456
AcvI	CACGTG	1 cut(s)	787
AcyI	GRCGYC	2 cut(s)	293, 317
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	2 cut(s)	65, 299
AfiI	CCNNNNNNNGG	2 cut(s)	473, 474
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	707
AluBI	AGCT	6 cut(s)	11, 139, 145, 205, 669, 710
AluI	AGCT	6 cut(s)	11, 139, 145, 205, 669, 710
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	563, 576
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	3 cut(s)	282, 576, 619
ApeKI	GCWGC	5 cut(s)	79, 376, 426, 505, 625
ApoI	RAATTY	1 cut(s)	452
AseI	ATTAAT	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	405, 464, 790
AsuHPI	GGTGA	2 cut(s)	241, 614
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	3 cut(s)	405, 464, 790
BalI	TGGCCA	1 cut(s)	578
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	644
BbrPI	CACGTG	1 cut(s)	787
BbvI	GCAGC	5 cut(s)	66, 363, 438, 517, 637
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	3 cut(s)	223, 493, 543
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcoDI	GTCTC	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	80, 623
BglI	GCCNNNNNGGC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	73
Bme18I	GGWCC	3 cut(s)	405, 464, 790
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	3 cut(s)	405, 464, 790
BmiI	GGNNCC	5 cut(s)	273, 465, 466, 570, 792
BmrI	ACTGGG	1 cut(s)	624
BmuI	ACTGGG	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BpmI	CTGGAG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	787
BsaHI	GRCGYC	2 cut(s)	293, 317
BsaJI	CCNNGG	3 cut(s)	285, 573, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 474
Bse1I	ACTGG	1 cut(s)	630
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	285, 573, 579
BseLI	CCNNNNNNNGG	2 cut(s)	473, 474
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	1 cut(s)	630
BseRI	GAGGAG	9 cut(s)	37, 140, 143, 146, 149, 356, 359, 415, 576
BseXI	GCAGC	5 cut(s)	66, 363, 438, 517, 637
BseYI	CCCAGC	1 cut(s)	302
BsgI	GTGCAG	2 cut(s)	115, 524
Bsh1236I	CGCG	2 cut(s)	107, 768
BshFI	GGCC	3 cut(s)	284, 578, 621
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	275, 494
BsiWI	CGTACG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	2 cut(s)	473, 474
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	284, 578, 621
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	3 cut(s)	73, 212, 568
BspANI	GGCC	3 cut(s)	284, 578, 621
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	2 cut(s)	107, 768
BspLI	GGNNCC	5 cut(s)	273, 465, 466, 570, 792
BspMAI	CTGCAG	2 cut(s)	84, 627
BspPI	GGATC	2 cut(s)	563, 576
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	3 cut(s)	285, 573, 579
BssMI	GATC	3 cut(s)	73, 212, 568
BssNI	GRCGYC	2 cut(s)	293, 317
BssT1I	CCWWGG	3 cut(s)	285, 573, 579
Bst6I	CTCTTC	4 cut(s)	246, 350, 432, 708
BstACI	GRCGYC	2 cut(s)	293, 317
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	787
BstC8I	GCNNGC	4 cut(s)	30, 203, 540, 623
BstDEI	CTNAG	1 cut(s)	636
BstFNI	CGCG	2 cut(s)	107, 768
BstKTI	GATC	3 cut(s)	76, 215, 571
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	73, 212, 568
BstSFI	CTRYAG	2 cut(s)	80, 623
BstUI	CGCG	2 cut(s)	107, 768
BstV1I	GCAGC	5 cut(s)	66, 363, 438, 517, 637
BstX2I	RGATCY	2 cut(s)	73, 568
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	2 cut(s)	73, 568
BsuRI	GGCC	3 cut(s)	284, 578, 621
BtsI	GCAGTG	2 cut(s)	504, 562
BtsIMutI	CAGTG	2 cut(s)	504, 562
Cac8I	GCNNGC	4 cut(s)	30, 203, 540, 623
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	405, 464, 790
CseI	GACGC	5 cut(s)	96, 113, 282, 306, 382
Csp6I	GTAC	2 cut(s)	64, 298
CviAII	CATG	3 cut(s)	781, 806, 858
CviQI	GTAC	2 cut(s)	64, 298
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	3 cut(s)	75, 214, 570
DpnII	GATC	3 cut(s)	73, 212, 568
DraIII	CACNNNGTG	1 cut(s)	659
EaeI	YGGCCR	2 cut(s)	282, 576
Eam1104I	CTCTTC	4 cut(s)	246, 350, 432, 708
EarI	CTCTTC	4 cut(s)	246, 350, 432, 708
Eco130I	CCWWGG	3 cut(s)	285, 573, 579
Eco24I	GRGCYC	1 cut(s)	644
Eco47I	GGWCC	3 cut(s)	405, 464, 790
Eco57I	CTGAAG	1 cut(s)	456
Eco72I	CACGTG	1 cut(s)	787
Eco88I	CYCGRG	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	464
EcoT14I	CCWWGG	3 cut(s)	285, 573, 579
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	3 cut(s)	285, 573, 579
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	3 cut(s)	784, 809, 861
FaiI	YATR	8 cut(s)	123, 236, 727, 745, 782, 807, 839, 859
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	3 cut(s)	780, 805, 857
FauI	CCCGC	1 cut(s)	773
FblI	GTMKAC	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	644
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	284, 578, 621
HapII	CCGG	2 cut(s)	275, 494
HgaI	GACGC	5 cut(s)	96, 113, 282, 306, 382
Hin1I	GRCGYC	2 cut(s)	293, 317
Hin1II	CATG	3 cut(s)	784, 809, 861
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	4 cut(s)	148, 174, 263, 650
HpaII	CCGG	2 cut(s)	275, 494
HphI	GGTGA	2 cut(s)	241, 614
Hpy166II	GTNNAC	3 cut(s)	184, 698, 790
Hpy188I	TCNGA	6 cut(s)	54, 179, 212, 330, 409, 685
Hpy8I	GTNNAC	3 cut(s)	184, 698, 790
Hpy99I	CGWCG	8 cut(s)	107, 112, 263, 298, 322, 325, 334, 676
HpyAV	CCTTC	3 cut(s)	11, 355, 836
HpyCH4IV	ACGT	2 cut(s)	47, 786
HpyCH4V	TGCA	8 cut(s)	82, 96, 370, 505, 625, 784, 809, 857
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	2 cut(s)	47, 786
Hsp92I	GRCGYC	2 cut(s)	293, 317
Hsp92II	CATG	3 cut(s)	784, 809, 861
KflI	GGGWCCC	1 cut(s)	464
Kzo9I	GATC	3 cut(s)	73, 212, 568
LmnI	GCTCC	4 cut(s)	136, 142, 189, 277
Lsp1109I	GCAGC	5 cut(s)	66, 363, 438, 517, 637
MaeII	ACGT	2 cut(s)	47, 786
MaeIII	GTNAC	5 cut(s)	229, 523, 602, 651, 845
MalI	GATC	3 cut(s)	75, 214, 570
MboI	GATC	3 cut(s)	73, 212, 568
MboII	GAAGA	6 cut(s)	183, 207, 263, 367, 449, 695
MflI	RGATCY	2 cut(s)	73, 568
MhlI	GDGCHC	1 cut(s)	644
MlsI	TGGCCA	1 cut(s)	578
MluCI	AATT	5 cut(s)	452, 721, 739, 757, 852
MluI	ACGCGT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	578
MlyI	GAGTC	2 cut(s)	257, 659
MmeI	TCCRAC	1 cut(s)	353
Mox20I	TGGCCA	1 cut(s)	578
MscI	TGGCCA	1 cut(s)	578
MseI	TTAA	2 cut(s)	89, 732
MslI	CAYNNNNRTG	2 cut(s)	785, 804
Msp20I	TGGCCA	1 cut(s)	578
MspI	CCGG	2 cut(s)	275, 494
MvnI	CGCG	2 cut(s)	107, 768
NdeII	GATC	3 cut(s)	73, 212, 568
NlaIII	CATG	3 cut(s)	784, 809, 861
NlaIV	GGNNCC	5 cut(s)	273, 465, 466, 570, 792
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	4 cut(s)	229, 523, 602, 651
PcsI	WCGNNNNNNNCGW	2 cut(s)	326, 783
PfeI	GAWTC	2 cut(s)	148, 174
Pfl23II	CGTACG	1 cut(s)	297
PleI	GAGTC	2 cut(s)	257, 658
PmaCI	CACGTG	1 cut(s)	787
PmlI	CACGTG	1 cut(s)	787
PpsI	GAGTC	2 cut(s)	257, 658
Ppu21I	YACGTR	1 cut(s)	787
PpuMI	RGGWCCY	1 cut(s)	464
PshBI	ATTAAT	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	464
PspCI	CACGTG	1 cut(s)	787
PspFI	CCCAGC	1 cut(s)	302
PspLI	CGTACG	1 cut(s)	297
PspN4I	GGNNCC	5 cut(s)	273, 465, 466, 570, 792
PspPI	GGNCC	3 cut(s)	405, 464, 790
PspPPI	RGGWCCY	1 cut(s)	464
PstI	CTGCAG	2 cut(s)	84, 627
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	73, 568
RsaI	GTAC	2 cut(s)	65, 299
RsaNI	GTAC	2 cut(s)	64, 298
RseI	CAYNNNNRTG	2 cut(s)	785, 804
SaqAI	TTAA	2 cut(s)	89, 732
Sau3AI	GATC	3 cut(s)	73, 212, 568
Sau96I	GGNCC	3 cut(s)	405, 464, 790
SchI	GAGTC	2 cut(s)	257, 659
SduI	GDGCHC	1 cut(s)	644
SfcI	CTRYAG	2 cut(s)	80, 623
SinI	GGWCC	3 cut(s)	405, 464, 790
SmiMI	CAYNNNNRTG	2 cut(s)	785, 804
Sse9I	AATT	5 cut(s)	452, 721, 739, 757, 852
StyI	CCWWGG	3 cut(s)	285, 573, 579
TaiI	ACGT	2 cut(s)	50, 789
TaqI	TCGA	2 cut(s)	116, 221
TasI	AATT	5 cut(s)	452, 721, 739, 757, 852
TauI	GCSGC	8 cut(s)	272, 281, 284, 293, 382, 392, 521, 533
TfiI	GAWTC	2 cut(s)	148, 174
Tru1I	TTAA	2 cut(s)	89, 732
Tru9I	TTAA	2 cut(s)	89, 732
TscAI	CASTG	2 cut(s)	504, 562
TseFI	GTSAC	4 cut(s)	229, 523, 602, 651
TseI	GCWGC	5 cut(s)	79, 376, 426, 505, 625
Tsp45I	GTSAC	4 cut(s)	229, 523, 602, 651
TspDTI	ATGAA	2 cut(s)	732, 794
TspGWI	ACGGA	2 cut(s)	347, 353
TspRI	CASTG	2 cut(s)	504, 562
VpaK11BI	GGWCC	3 cut(s)	405, 464, 790
VspI	ATTAAT	1 cut(s)	89
XapI	RAATTY	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.