Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010347

Physical Location & Seq

Genomic Coordinates Reverse (-)

6651434 .. 6653928

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGCGAAGCTAACGAAGGCAGGAGGCGAGCAATGGAGAACCTGACGTTTCAGATGGATAAGTACCCGAGAGATCTGCTGCAGAGATTAATGTGCAGAAACGACGTGTCGCAGTCGAAATATGAGGAGGGAAATGAGGAGGAGGAGCTGGAGCTGAATCTGGGGCTGTCTTTGGGAGGAAGATTCGGAGTAGACAAGAGCGAGAAAAGCAAGCTAGTCCGATCTTCCTCGATTGCGGTGACTATGCCGTTTTGTAGGGAAGAGAACGACGACTCGCCGGCTCCGTCGGCGGCCAAGGTGGCGTCGTACGCGGGGCTGATGAGGGCGTCGTCGCTTCCGACGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAGTTGCAGACTCTGCGGCGGTTGGCGGCGAAGCGGAGGAGGTCGGAGAAGCAGAGGAACAGCAGCAGCAGCAGCAAGGAGGAAGAGGAAAGGCGTGAATTTGAGGTGGGACCCACTTCAGGGATGAGGGCGAATAATCCGGCGGTGGTGCAGCCGTTTTGGGCGGCTGTGACGGCGGCGAGGCAAGCGGTTGGTGGTGGCGGTGGAGGAGTGGACCCCTTGGCTAAGGGTAAAAATGACATTTTGGGTGGCTTTCAGGGGTTTGGGCTGCAGCCCAGTTCTCAGGGCTCGGTGGAGTCACAAGGTGGTGGAAGCTCGTCGGGATTGTCTGAAATGGAGAGTAAACCTCTTCAAGGATCCAGCAGCAGCTGTGGTGAAGCAAGAAGCCCTATTAGTAATCAGGATCCACAAAGCAATCAGGGCACCACCCTTCGTTCTTTGGGGTCATTGACACCTGAGCATGCATCCAGAATTTCCAGGGCTGTCATGGAAAACATGTGTAAGAAGCCTAATCCTTCAGAAAATAAAGGAAGGGAAACTAGGACGAATGCCATGGAGGATATGCCTTGTGTTTTCACAAAAGGAGACGGTCCTAATGGGAGAAAAATAGAAGGAATCCTATACCGATATGGGAAGGGAGAGGAAGTAAGAATAATGTGTGTATGCCATGGCACCTTTCTTTCTCCGGCAGAGTTTGTGAAGCACGCAGGAGGTGGTGACGTCGCGCACCCGCTTCGGCACATAGTTGTAAACCCTGCTGCAACTGCCTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

383

Amino Acids

41.45

Weight (kDa)

8.4

Isoelectric Point (pI)

71.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EAR	PF07897	45 - 80	2.3e-16	Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP	PF16136	106 - 142	1.8e-20	Putative nuclear localisation signal in Ninja/AFP proteins
TDBD	PF16135	341 - 373	6.6e-08	Tify domain binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13740
fragaria_vesca	FvH4_4g29910 FvH4_4g29910
malus_domestica	MD13G1061900.v1.1 MD16G1060400.v1.1
prunus_persica	Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1
pyrus_communis	pycom13g05440 pycom16g05260
rosa_chinensis	RchiOBHm_Chr4g0438171
rosa_laevigata	RLG00000006382
rosa_multiflora	Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379310
rosa_rugosa	Rorug04G0308200
rosa_samantha	Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800
rosa_wichuraiana	Rw0G006360 Rw0G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1095
AccB1I	GGYRCC	2 cut(s)	794, 1043
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	2 cut(s)	311, 1097
AclWI	GGATC	4 cut(s)	723, 736, 770, 783
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	470, 843
AcuI	CTGAAG	2 cut(s)	474, 873
AcyI	GRCGYC	3 cut(s)	302, 326, 1092
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	2 cut(s)	65, 308
AfiI	CCNNNNNNNGG	3 cut(s)	491, 492, 725
AflIII	ACRYGT	2 cut(s)	105, 867
AgsI	TTSAA	1 cut(s)	725
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	848
AluBI	AGCT	6 cut(s)	11, 148, 154, 214, 687, 741
AluI	AGCT	6 cut(s)	11, 148, 154, 214, 687, 741
Alw26I	GTCTC	2 cut(s)	338, 951
AlwI	GGATC	4 cut(s)	723, 736, 770, 783
AlwNI	CAGNNNCTG	2 cut(s)	385, 741
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	291
ApoI	RAATTY	2 cut(s)	470, 843
AseI	ATTAAT	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	1099
AspS9I	GGNCC	3 cut(s)	482, 586, 962
AsuHPI	GGTGA	3 cut(s)	250, 758, 1100
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	3 cut(s)	482, 586, 962
BaeGI	GKGCMC	1 cut(s)	797
BamHI	GGATCC	2 cut(s)	728, 775
BanI	GGYRCC	2 cut(s)	794, 1043
BanII	GRGCYC	1 cut(s)	662
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	3 cut(s)	232, 511, 561
BcgI	CGANNNNNNTGC	4 cut(s)	58, 92, 1088, 1122
BciT130I	CCWGG	1 cut(s)	850
BcoDI	GTCTC	2 cut(s)	338, 951
BfaI	CTAG	2 cut(s)	215, 912
BfmI	CTRYAG	2 cut(s)	80, 641
BglI	GCCNNNNNGGC	1 cut(s)	299
BglII	AGATCT	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	850
Bme18I	GGWCC	3 cut(s)	482, 586, 962
BmeT110I	CYCGRG	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	482, 586, 962
BmiI	GGNNCC	8 cut(s)	282, 483, 484, 588, 730, 777, 796, 1045
BmrFI	CCNGG	1 cut(s)	850
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	1 cut(s)	845
BmuI	ACTGGG	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	703, 735
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	2 cut(s)	597, 828
BsaHI	GRCGYC	3 cut(s)	302, 326, 1092
BsaJI	CCNNGG	5 cut(s)	294, 591, 849, 924, 1039
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 371, 1002, 1032
Bsc4I	CCNNNNNNNGG	3 cut(s)	491, 492, 725
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	850
BseDI	CCNNGG	5 cut(s)	294, 591, 849, 924, 1039
BseGI	GGATG	2 cut(s)	501, 836
BseLI	CCNNNNNNNGG	3 cut(s)	491, 492, 725
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	668, 819
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	8 cut(s)	140, 152, 155, 158, 365, 368, 424, 594
BseSI	GKGCMC	1 cut(s)	797
BsgI	GTGCAG	2 cut(s)	115, 542
Bsh1236I	CGCG	2 cut(s)	311, 1097
BshFI	GGCC	1 cut(s)	293
BshNI	GGYRCC	2 cut(s)	794, 1043
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	278, 512, 1058
BsiWI	CGTACG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	3 cut(s)	491, 492, 725
BsmAI	GTCTC	2 cut(s)	338, 951
BsmBI	CGTCTC	2 cut(s)	338, 951
BsmFI	GGGAC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	662, 797
Bsp143I	GATC	4 cut(s)	73, 221, 728, 775
Bsp19I	CCATGG	2 cut(s)	924, 1039
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	667, 820
BspFNI	CGCG	2 cut(s)	311, 1097
BspLI	GGNNCC	8 cut(s)	282, 483, 484, 588, 730, 777, 796, 1045
BspMAI	CTGCAG	2 cut(s)	84, 645
BspPI	GGATC	4 cut(s)	723, 736, 770, 783
BspT107I	GGYRCC	2 cut(s)	794, 1043
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	648
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	5 cut(s)	294, 591, 849, 924, 1039
BssMI	GATC	4 cut(s)	73, 221, 728, 775
BssNI	GRCGYC	3 cut(s)	302, 326, 1092
BssT1I	CCWWGG	4 cut(s)	294, 591, 924, 1039
Bst2UI	CCWGG	1 cut(s)	850
Bst4CI	ACNGT	1 cut(s)	962
Bst6I	CTCTTC	4 cut(s)	255, 359, 450, 726
BstACI	GRCGYC	3 cut(s)	302, 326, 1092
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	6 cut(s)	30, 212, 279, 558, 834, 1077
BstDEI	CTNAG	3 cut(s)	597, 654, 828
BstDSI	CCRYGG	2 cut(s)	924, 1039
BstENI	CCTNNNNNAGG	1 cut(s)	723
BstF5I	GGATG	2 cut(s)	501, 836
BstFNI	CGCG	2 cut(s)	311, 1097
BstHHI	GCGC	1 cut(s)	1099
BstKTI	GATC	4 cut(s)	76, 224, 731, 778
BstMAI	GTCTC	2 cut(s)	338, 951
BstMBI	GATC	4 cut(s)	73, 221, 728, 775
BstNI	CCWGG	1 cut(s)	850
BstNSI	RCATGY	2 cut(s)	836, 871
BstSCI	CCNGG	1 cut(s)	848
BstSFI	CTRYAG	2 cut(s)	80, 641
BstSLI	GKGCMC	1 cut(s)	797
BstUI	CGCG	2 cut(s)	311, 1097
BstX2I	RGATCY	3 cut(s)	73, 728, 775
BstYI	RGATCY	3 cut(s)	73, 728, 775
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	2 cut(s)	924, 1039
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	501, 836
Cac8I	GCNNGC	6 cut(s)	30, 212, 279, 558, 834, 1077
CaiI	CAGNNNCTG	2 cut(s)	385, 741
CfoI	GCGC	1 cut(s)	1099
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	3 cut(s)	482, 586, 962
CseI	GACGC	2 cut(s)	291, 315
Csp6I	GTAC	2 cut(s)	64, 307
CviAII	CATG	5 cut(s)	833, 859, 868, 925, 1040
CviQI	GTAC	2 cut(s)	64, 307
DdeI	CTNAG	3 cut(s)	597, 654, 828
DpnI	GATC	4 cut(s)	75, 223, 730, 777
DpnII	GATC	4 cut(s)	73, 221, 728, 775
DraIII	CACNNNGTG	1 cut(s)	677
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	4 cut(s)	255, 359, 450, 726
EarI	CTCTTC	4 cut(s)	255, 359, 450, 726
Eco130I	CCWWGG	4 cut(s)	294, 591, 924, 1039
Eco24I	GRGCYC	1 cut(s)	662
Eco47I	GGWCC	3 cut(s)	482, 586, 962
Eco57I	CTGAAG	2 cut(s)	474, 873
Eco88I	CYCGRG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	723
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	848
EcoT14I	CCWWGG	4 cut(s)	294, 591, 924, 1039
EcoT22I	ATGCAT	1 cut(s)	838
EcoT38I	GRGCYC	1 cut(s)	662
ErhI	CCWWGG	4 cut(s)	294, 591, 924, 1039
Esp3I	CGTCTC	2 cut(s)	338, 951
FaeI	CATG	5 cut(s)	836, 862, 871, 928, 1043
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	5 cut(s)	832, 858, 867, 924, 1039
FauI	CCCGC	2 cut(s)	304, 1110
FblI	GTMKAC	1 cut(s)	192
FokI	GGATG	2 cut(s)	508, 823
FriOI	GRGCYC	1 cut(s)	662
FspBI	CTAG	2 cut(s)	215, 912
GlaI	GCGC	1 cut(s)	1098
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	3 cut(s)	278, 512, 1058
HgaI	GACGC	2 cut(s)	291, 315
HhaI	GCGC	1 cut(s)	1099
Hin1I	GRCGYC	3 cut(s)	302, 326, 1092
Hin1II	CATG	5 cut(s)	836, 862, 871, 928, 1043
Hin6I	GCGC	1 cut(s)	1097
HinP1I	GCGC	1 cut(s)	1097
HinfI	GANTC	6 cut(s)	157, 183, 272, 382, 668, 987
HpaII	CCGG	3 cut(s)	278, 512, 1058
HphI	GGTGA	3 cut(s)	250, 758, 1100
Hpy166II	GTNNAC	4 cut(s)	193, 586, 716, 1123
Hpy188I	TCNGA	7 cut(s)	54, 188, 221, 339, 418, 703, 892
Hpy188III	TCNNGA	3 cut(s)	693, 773, 840
Hpy8I	GTNNAC	4 cut(s)	193, 586, 716, 1123
Hpy99I	CGWCG	9 cut(s)	107, 272, 289, 307, 331, 334, 343, 694, 1097
HpyAV	CCTTC	7 cut(s)	11, 364, 812, 897, 897, 977, 1000
HpyCH4III	ACNGT	1 cut(s)	962
HpyCH4IV	ACGT	3 cut(s)	47, 105, 1092
HpyCH4V	TGCA	7 cut(s)	82, 96, 379, 523, 643, 836, 1133
HpyF3I	CTNAG	3 cut(s)	597, 654, 828
HpySE526I	ACGT	3 cut(s)	47, 105, 1092
Hsp92I	GRCGYC	3 cut(s)	302, 326, 1092
Hsp92II	CATG	5 cut(s)	836, 862, 871, 928, 1043
HspAI	GCGC	1 cut(s)	1097
KflI	GGGWCCC	1 cut(s)	482
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	73, 221, 728, 775
LmnI	GCTCC	3 cut(s)	145, 151, 286
LweI	GCATC	1 cut(s)	845
MaeI	CTAG	2 cut(s)	215, 912
MaeII	ACGT	3 cut(s)	47, 105, 1092
MaeIII	GTNAC	4 cut(s)	238, 541, 669, 1088
MalI	GATC	4 cut(s)	75, 223, 730, 777
MboI	GATC	4 cut(s)	73, 221, 728, 775
MboII	GAAGA	6 cut(s)	192, 216, 272, 376, 467, 713
MflI	RGATCY	3 cut(s)	73, 728, 775
MhlI	GDGCHC	2 cut(s)	662, 797
MluCI	AATT	2 cut(s)	470, 843
MlyI	GAGTC	3 cut(s)	266, 376, 677
MmeI	TCCRAC	2 cut(s)	362, 396
Mph1103I	ATGCAT	1 cut(s)	838
MroNI	GCCGGC	1 cut(s)	277
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	741
MspI	CCGG	3 cut(s)	278, 512, 1058
MspR9I	CCNGG	1 cut(s)	850
Mva1269I	GAATGC	1 cut(s)	925
MvaI	CCWGG	1 cut(s)	850
MvnI	CGCG	2 cut(s)	311, 1097
NaeI	GCCGGC	1 cut(s)	279
NcoI	CCATGG	2 cut(s)	924, 1039
NdeII	GATC	4 cut(s)	73, 221, 728, 775
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	5 cut(s)	836, 862, 871, 928, 1043
NlaIV	GGNNCC	8 cut(s)	282, 483, 484, 588, 730, 777, 796, 1045
NmuCI	GTSAC	4 cut(s)	238, 541, 669, 1088
NsiI	ATGCAT	1 cut(s)	838
NspI	RCATGY	2 cut(s)	836, 871
PaeI	GCATGC	1 cut(s)	836
PciI	ACATGT	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	2 cut(s)	281, 335
PctI	GAATGC	1 cut(s)	925
PdiI	GCCGGC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	157, 183, 987
Pfl23II	CGTACG	1 cut(s)	306
PleI	GAGTC	3 cut(s)	266, 376, 676
PpsI	GAGTC	3 cut(s)	266, 376, 676
PpuMI	RGGWCCY	1 cut(s)	482
PscI	ACATGT	1 cut(s)	867
PshBI	ATTAAT	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	848
PspLI	CGTACG	1 cut(s)	306
PspN4I	GGNNCC	8 cut(s)	282, 483, 484, 588, 730, 777, 796, 1045
PspPI	GGNCC	3 cut(s)	482, 586, 962
PspPPI	RGGWCCY	1 cut(s)	482
PstI	CTGCAG	2 cut(s)	84, 645
PstNI	CAGNNNCTG	2 cut(s)	385, 741
PsuI	RGATCY	3 cut(s)	73, 728, 775
PvuII	CAGCTG	1 cut(s)	741
RsaI	GTAC	2 cut(s)	65, 308
RsaNI	GTAC	2 cut(s)	64, 307
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	4 cut(s)	73, 221, 728, 775
Sau96I	GGNCC	3 cut(s)	482, 586, 962
SchI	GAGTC	3 cut(s)	266, 376, 677
ScrFI	CCNGG	1 cut(s)	850
SduI	GDGCHC	2 cut(s)	662, 797
SfaNI	GCATC	1 cut(s)	845
SfcI	CTRYAG	2 cut(s)	80, 641
SinI	GGWCC	3 cut(s)	482, 586, 962
SphI	GCATGC	1 cut(s)	836
Sse9I	AATT	2 cut(s)	470, 843
SspMI	CTAG	2 cut(s)	215, 912
StyD4I	CCNGG	1 cut(s)	848
StyI	CCWWGG	4 cut(s)	294, 591, 924, 1039
TaaI	ACNGT	1 cut(s)	962
TaiI	ACGT	3 cut(s)	50, 108, 1095
TaqI	TCGA	2 cut(s)	116, 230
TasI	AATT	2 cut(s)	470, 843
TauI	GCSGC	5 cut(s)	293, 391, 401, 539, 551
TfiI	GAWTC	3 cut(s)	157, 183, 987
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseFI	GTSAC	4 cut(s)	238, 541, 669, 1088
Tsp45I	GTSAC	4 cut(s)	238, 541, 669, 1088
TspGWI	ACGGA	3 cut(s)	273, 356, 362
VpaK11BI	GGWCC	3 cut(s)	482, 586, 962
VspI	ATTAAT	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	723
XapI	RAATTY	2 cut(s)	470, 843
XceI	RCATGY	2 cut(s)	836, 871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	856
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	2 cut(s)	215, 912
ZraI	GACGTC	1 cut(s)	1093
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.