RchiOBHm_Chr4g0438171

Ninja-family protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
61018079 .. 61021877
3799 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40632

Sequence Viewer

Length: 1131 bp
ATGGGCGAAGCTAACGAAGGGAGGAGGCGAGCAATGGAGAACTTGACGTTTCAGATGGATAAGTACCCGAGAGATCTGCTGCAGAGATTAATGTGCAGAAACGACGCGTCGCAGTCGAAATATGAGGAGGAGGATGAGGAGCTGGAGCTGAATCTGGGGCTGTCTTTGGGAGGAAGATTCGGAGTAGACAGGAGCGAGAAAAGCAAGCTAGTCCGATCTTCCTCGATTGCGGTGACTATGCCGTTTTGTAGGGAAGAGAACGACGACTCGGCGGCTCCGGCGGCGGCGAAGGCGGCGTCGTACGCTGGGCTGATGAGGGCGTCGTCGCTTCCGACGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAGTTGCAGACGCTGCGGCGGTTGGCGGCGAAGCGGAGGAGGTCCGAGAAGCAGAGGAACAGCAGCAAGGAGGAAGAGGAAAGGCGTGAATTTGAGGTGGGACCCACTTCAGGGGTGAGGGCGAATAATCCGGCGGTGGTGCAGCCGTTTTGGCCGGCTGTGACGGCGGCGAGGCAAGCGGTTGGTGGTGGCGGTGGAGGAGTGGATCCCTTGGCGAAGGGTAAAAATGACATTTTGGGTGGCTTTCAGGGGTTTGGCCTGCAGCCCAGTTCTCAGGGCTCGGTGGAGTCACAAGGTGTTGGAAGCTCGTCGGGGTTGTCAGAAATGGAGAGTAAACCTCTTCAAGGATCCAGCAGCTGTGGTGAAGCAAAAAGCCCTATTAGTAATCAGGATCCACGAAGCAATCAGGGCACCACCCTTCGTTCTTTGGGGTCATTGACGCCTGAGCATGCATCCAGAATTTCCAGGGCTGTCGTGGAAAACATGTGTAAGAAGCCTAATCCTTCAGAAAATAAAGGAAGGGAAACTAGGACGAATGCCATGGAGGATATGCCTTGTGTTTTCACAAAAGGAGACGGTCCTAATGGGAGAAAAATAGAAGGAATCCTATACCGATATGGGAAGGGAGAGGAAGTAAGAATAATGTGTGTATGCCACGGCACCTTTCTTTCTCCGGCAGAGTTTGTGAAGCACGCAGGAGGTGGTGACGTTGCGCACCCGCTTCGGCACATAGTTGTAAATCCTGCTGCAACTGCCTTTTTGTGA

Protein Analysis

376

Amino Acids

40.85

Weight (kDa)

8.61

Isoelectric Point (pI)

68.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 43 - 78 1.2e-15 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 104 - 140 1.7e-20 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 335 - 367 6.5e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1080
AccB1I GGYRCC 2 cut(s) 776, 1025
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 107
AclWI GGATC 6 cut(s) 566, 579, 708, 721, 752, 765
AcoI YGGCCR 1 cut(s) 518
AcsI RAATTY 2 cut(s) 455, 825
AcuI CTGAAG 2 cut(s) 459, 855
AcyI GRCGYC 3 cut(s) 296, 320, 806
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 2 cut(s) 65, 302
AfiI CCNNNNNNNGG 3 cut(s) 476, 477, 710
AflIII ACRYGT 2 cut(s) 105, 849
AgsI TTSAA 1 cut(s) 710
AjnI CCWGG 1 cut(s) 830
AluBI AGCT 6 cut(s) 11, 142, 148, 208, 672, 723
AluI AGCT 6 cut(s) 11, 142, 148, 208, 672, 723
Alw26I GTCTC 2 cut(s) 332, 933
AlwI GGATC 6 cut(s) 566, 579, 708, 721, 752, 765
AlwNI CAGNNNCTG 2 cut(s) 379, 723
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 2 cut(s) 518, 622
ApeKI GCWGC 7 cut(s) 79, 379, 429, 508, 628, 720, 1112
ApoI RAATTY 2 cut(s) 455, 825
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AseI ATTAAT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 1081
AspS9I GGNCC 3 cut(s) 408, 467, 944
AsuHPI GGTGA 4 cut(s) 244, 493, 740, 1082
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 3 cut(s) 408, 467, 944
BaeGI GKGCMC 1 cut(s) 779
BamHI GGATCC 3 cut(s) 571, 713, 757
BanI GGYRCC 2 cut(s) 776, 1025
BanII GRGCYC 1 cut(s) 647
BbvI GCAGC 7 cut(s) 66, 366, 441, 520, 640, 732, 1099
BccI CCATC 1 cut(s) 49
BceAI ACGGC 4 cut(s) 226, 496, 546, 1039
BcgI CGANNNNNNTGC 4 cut(s) 58, 92, 1070, 1104
BciT130I CCWGG 1 cut(s) 832
BcoDI GTCTC 2 cut(s) 332, 933
BfaI CTAG 2 cut(s) 209, 894
BfmI CTRYAG 2 cut(s) 80, 626
BglI GCCNNNNNGGC 1 cut(s) 517
BglII AGATCT 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 832
Bme18I GGWCC 3 cut(s) 408, 467, 944
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 3 cut(s) 408, 467, 944
BmiI GGNNCC 8 cut(s) 276, 468, 469, 573, 715, 759, 778, 1027
BmrFI CCNGG 1 cut(s) 832
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 1 cut(s) 827
BmuI ACTGGG 1 cut(s) 627
BplI GAGNNNNNCTC 2 cut(s) 688, 720
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 810
BsaHI GRCGYC 3 cut(s) 296, 320, 806
BsaJI CCNNGG 4 cut(s) 576, 831, 906, 1021
BsaXI ACNNNNNCTCC 4 cut(s) 335, 365, 984, 1014
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 477, 710
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 1 cut(s) 633
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 832
BseDI CCNNGG 4 cut(s) 576, 831, 906, 1021
BseGI GGATG 2 cut(s) 139, 818
BseLI CCNNNNNNNGG 3 cut(s) 476, 477, 710
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 653, 801
BseNI ACTGG 1 cut(s) 633
BseRI GAGGAG 8 cut(s) 37, 140, 143, 152, 359, 362, 418, 579
BseSI GKGCMC 1 cut(s) 779
BseXI GCAGC 7 cut(s) 66, 366, 441, 520, 640, 732, 1099
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 2 cut(s) 115, 527
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 520, 624
BshNI GGYRCC 2 cut(s) 776, 1025
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 4 cut(s) 278, 497, 521, 1040
BsiWI CGTACG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 3 cut(s) 476, 477, 710
BsmAI GTCTC 2 cut(s) 332, 933
BsmBI CGTCTC 2 cut(s) 332, 933
BsmFI GGGAC 1 cut(s) 480
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 2 cut(s) 520, 624
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 647, 779
Bsp143I GATC 5 cut(s) 73, 215, 571, 713, 757
Bsp19I CCATGG 1 cut(s) 906
BspANI GGCC 2 cut(s) 520, 624
BspCNI CTCAG 2 cut(s) 652, 802
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 8 cut(s) 276, 468, 469, 573, 715, 759, 778, 1027
BspMAI CTGCAG 2 cut(s) 84, 630
BspPI GGATC 6 cut(s) 566, 579, 708, 721, 752, 765
BspT107I GGYRCC 2 cut(s) 776, 1025
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 520
BsrI ACTGG 1 cut(s) 633
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 4 cut(s) 576, 831, 906, 1021
BssMI GATC 5 cut(s) 73, 215, 571, 713, 757
BssNI GRCGYC 3 cut(s) 296, 320, 806
BssT1I CCWWGG 2 cut(s) 576, 906
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 1 cut(s) 944
Bst6I CTCTTC 4 cut(s) 249, 353, 435, 711
BstACI GRCGYC 3 cut(s) 296, 320, 806
BstAPI GCANNNNNTGC 1 cut(s) 379
BstC8I GCNNGC 7 cut(s) 30, 206, 522, 543, 626, 816, 1059
BstDEI CTNAG 2 cut(s) 639, 810
BstDSI CCRYGG 2 cut(s) 906, 1021
BstENI CCTNNNNNAGG 1 cut(s) 708
BstF5I GGATG 2 cut(s) 139, 818
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 1081
BstKTI GATC 5 cut(s) 76, 218, 574, 716, 760
BstMAI GTCTC 2 cut(s) 332, 933
BstMBI GATC 5 cut(s) 73, 215, 571, 713, 757
BstNI CCWGG 1 cut(s) 832
BstNSI RCATGY 2 cut(s) 818, 853
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 2 cut(s) 80, 626
BstSLI GKGCMC 1 cut(s) 779
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 7 cut(s) 66, 366, 441, 520, 640, 732, 1099
BstX2I RGATCY 4 cut(s) 73, 571, 713, 757
BstYI RGATCY 4 cut(s) 73, 571, 713, 757
BsuRI GGCC 2 cut(s) 520, 624
BtgI CCRYGG 2 cut(s) 906, 1021
BtsCI GGATG 2 cut(s) 139, 818
Cac8I GCNNGC 7 cut(s) 30, 206, 522, 543, 626, 816, 1059
CaiI CAGNNNCTG 2 cut(s) 379, 723
CfoI GCGC 1 cut(s) 1081
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 3 cut(s) 408, 467, 944
CseI GACGC 6 cut(s) 96, 113, 285, 309, 385, 814
Csp6I GTAC 2 cut(s) 64, 301
CviAII CATG 3 cut(s) 815, 850, 907
CviQI GTAC 2 cut(s) 64, 301
DdeI CTNAG 2 cut(s) 639, 810
DpnI GATC 5 cut(s) 75, 217, 573, 715, 759
DpnII GATC 5 cut(s) 73, 215, 571, 713, 757
DraIII CACNNNGTG 1 cut(s) 662
EaeI YGGCCR 1 cut(s) 518
Eam1104I CTCTTC 4 cut(s) 249, 353, 435, 711
EarI CTCTTC 4 cut(s) 249, 353, 435, 711
Eco130I CCWWGG 2 cut(s) 576, 906
Eco24I GRGCYC 1 cut(s) 647
Eco47I GGWCC 3 cut(s) 408, 467, 944
Eco57I CTGAAG 2 cut(s) 459, 855
Eco88I CYCGRG 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 708
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 830
EcoT14I CCWWGG 2 cut(s) 576, 906
EcoT22I ATGCAT 1 cut(s) 820
EcoT38I GRGCYC 1 cut(s) 647
ErhI CCWWGG 2 cut(s) 576, 906
Esp3I CGTCTC 2 cut(s) 332, 933
FaeI CATG 3 cut(s) 818, 853, 910
FaqI GGGAC 1 cut(s) 480
FatI CATG 3 cut(s) 814, 849, 906
FauI CCCGC 1 cut(s) 1092
FblI GTMKAC 1 cut(s) 186
FokI GGATG 2 cut(s) 146, 805
FriOI GRGCYC 1 cut(s) 647
FspBI CTAG 2 cut(s) 209, 894
FspI TGCGCA 1 cut(s) 1080
GlaI GCGC 1 cut(s) 1080
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 2 cut(s) 520, 624
HapII CCGG 4 cut(s) 278, 497, 521, 1040
HgaI GACGC 6 cut(s) 96, 113, 285, 309, 385, 814
HhaI GCGC 1 cut(s) 1081
Hin1I GRCGYC 3 cut(s) 296, 320, 806
Hin1II CATG 3 cut(s) 818, 853, 910
Hin6I GCGC 1 cut(s) 1079
HinP1I GCGC 1 cut(s) 1079
HinfI GANTC 5 cut(s) 151, 177, 266, 653, 969
HpaII CCGG 4 cut(s) 278, 497, 521, 1040
HphI GGTGA 4 cut(s) 244, 493, 740, 1082
Hpy166II GTNNAC 2 cut(s) 187, 701
Hpy188I TCNGA 7 cut(s) 54, 182, 215, 333, 412, 688, 874
Hpy188III TCNNGA 2 cut(s) 755, 822
Hpy8I GTNNAC 2 cut(s) 187, 701
Hpy99I CGWCG 8 cut(s) 107, 112, 266, 301, 325, 328, 337, 679
HpyAV CCTTC 9 cut(s) 11, 283, 358, 577, 794, 879, 879, 959, 982
HpyCH4III ACNGT 1 cut(s) 944
HpyCH4IV ACGT 2 cut(s) 47, 1074
HpyCH4V TGCA 7 cut(s) 82, 96, 373, 508, 628, 818, 1115
HpyF3I CTNAG 2 cut(s) 639, 810
HpySE526I ACGT 2 cut(s) 47, 1074
Hsp92I GRCGYC 3 cut(s) 296, 320, 806
Hsp92II CATG 3 cut(s) 818, 853, 910
HspAI GCGC 1 cut(s) 1079
KflI GGGWCCC 1 cut(s) 467
KroI GCCGGC 1 cut(s) 520
KroNI GCCGGC 1 cut(s) 522
Kzo9I GATC 5 cut(s) 73, 215, 571, 713, 757
LmnI GCTCC 4 cut(s) 139, 145, 192, 280
Lsp1109I GCAGC 7 cut(s) 66, 366, 441, 520, 640, 732, 1099
LweI GCATC 1 cut(s) 827
MaeI CTAG 2 cut(s) 209, 894
MaeII ACGT 2 cut(s) 47, 1074
MaeIII GTNAC 4 cut(s) 232, 526, 654, 1070
MalI GATC 5 cut(s) 75, 217, 573, 715, 759
MboI GATC 5 cut(s) 73, 215, 571, 713, 757
MboII GAAGA 6 cut(s) 186, 210, 266, 370, 452, 698
MflI RGATCY 4 cut(s) 73, 571, 713, 757
MhlI GDGCHC 2 cut(s) 647, 779
MluCI AATT 2 cut(s) 455, 825
MluI ACGCGT 1 cut(s) 105
MlyI GAGTC 2 cut(s) 260, 662
MmeI TCCRAC 2 cut(s) 356, 646
Mph1103I ATGCAT 1 cut(s) 820
MroNI GCCGGC 1 cut(s) 520
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 723
MspI CCGG 4 cut(s) 278, 497, 521, 1040
MspR9I CCNGG 1 cut(s) 832
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 1 cut(s) 832
MvnI CGCG 1 cut(s) 107
NaeI GCCGGC 1 cut(s) 522
NcoI CCATGG 1 cut(s) 906
NdeII GATC 5 cut(s) 73, 215, 571, 713, 757
NgoMIV GCCGGC 1 cut(s) 520
NlaIII CATG 3 cut(s) 818, 853, 910
NlaIV GGNNCC 8 cut(s) 276, 468, 469, 573, 715, 759, 778, 1027
NmeAIII GCCGAG 1 cut(s) 248
NmuCI GTSAC 4 cut(s) 232, 526, 654, 1070
NsbI TGCGCA 1 cut(s) 1080
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 2 cut(s) 818, 853
PaeI GCATGC 1 cut(s) 818
PciI ACATGT 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PctI GAATGC 1 cut(s) 907
PdiI GCCGGC 1 cut(s) 522
PfeI GAWTC 3 cut(s) 151, 177, 969
Pfl23II CGTACG 1 cut(s) 300
PleI GAGTC 2 cut(s) 260, 661
PpsI GAGTC 2 cut(s) 260, 661
PpuMI RGGWCCY 1 cut(s) 467
PscI ACATGT 1 cut(s) 849
PshBI ATTAAT 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 830
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 830
PspLI CGTACG 1 cut(s) 300
PspN4I GGNNCC 8 cut(s) 276, 468, 469, 573, 715, 759, 778, 1027
PspPI GGNCC 3 cut(s) 408, 467, 944
PspPPI RGGWCCY 1 cut(s) 467
PstI CTGCAG 2 cut(s) 84, 630
PstNI CAGNNNCTG 2 cut(s) 379, 723
PsuI RGATCY 4 cut(s) 73, 571, 713, 757
PvuII CAGCTG 1 cut(s) 723
RsaI GTAC 2 cut(s) 65, 302
RsaNI GTAC 2 cut(s) 64, 301
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 5 cut(s) 73, 215, 571, 713, 757
Sau96I GGNCC 3 cut(s) 408, 467, 944
SchI GAGTC 2 cut(s) 260, 662
ScrFI CCNGG 1 cut(s) 832
SduI GDGCHC 2 cut(s) 647, 779
SfaNI GCATC 1 cut(s) 827
SfcI CTRYAG 2 cut(s) 80, 626
SinI GGWCC 3 cut(s) 408, 467, 944
SphI GCATGC 1 cut(s) 818
Sse9I AATT 2 cut(s) 455, 825
SspMI CTAG 2 cut(s) 209, 894
StyD4I CCNGG 1 cut(s) 830
StyI CCWWGG 2 cut(s) 576, 906
TaaI ACNGT 1 cut(s) 944
TaiI ACGT 2 cut(s) 50, 1077
TaqI TCGA 2 cut(s) 116, 224
TasI AATT 2 cut(s) 455, 825
TauI GCSGC 7 cut(s) 275, 284, 287, 296, 385, 395, 536
TfiI GAWTC 3 cut(s) 151, 177, 969
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseFI GTSAC 4 cut(s) 232, 526, 654, 1070
TseI GCWGC 7 cut(s) 79, 379, 429, 508, 628, 720, 1112
Tsp45I GTSAC 4 cut(s) 232, 526, 654, 1070
TspGWI ACGGA 2 cut(s) 350, 356
VpaK11BI GGWCC 3 cut(s) 408, 467, 944
VspI ATTAAT 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 708
XapI RAATTY 2 cut(s) 455, 825
XceI RCATGY 2 cut(s) 818, 853
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 209, 894
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.