Ninja-family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13740 |
| fragaria_vesca | FvH4_4g29910 FvH4_4g29910 |
| malus_domestica | MD13G1061900.v1.1 MD16G1060400.v1.1 |
| prunus_persica | Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1 |
| pyrus_communis | pycom13g05440 pycom16g05260 |
| rosa_chinensis | RchiOBHm_Chr4g0438171 |
| rosa_laevigata | RLG00000006382 |
| rosa_multiflora | Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00379310 |
| rosa_rugosa | Rorug04G0308200 |
| rosa_samantha | Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800 |
| rosa_wichuraiana | Rw0G006360 Rw0G016300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1080 |
| AccB1I | GGYRCC | 2 cut(s) | 776, 1025 |
| AccI | GTMKAC | 1 cut(s) | 186 |
| AccII | CGCG | 1 cut(s) | 107 |
| AclWI | GGATC | 6 cut(s) | 566, 579, 708, 721, 752, 765 |
| AcoI | YGGCCR | 1 cut(s) | 518 |
| AcsI | RAATTY | 2 cut(s) | 455, 825 |
| AcuI | CTGAAG | 2 cut(s) | 459, 855 |
| AcyI | GRCGYC | 3 cut(s) | 296, 320, 806 |
| AdeI | CACNNNGTG | 1 cut(s) | 662 |
| AfaI | GTAC | 2 cut(s) | 65, 302 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 476, 477, 710 |
| AflIII | ACRYGT | 2 cut(s) | 105, 849 |
| AgsI | TTSAA | 1 cut(s) | 710 |
| AjnI | CCWGG | 1 cut(s) | 830 |
| AluBI | AGCT | 6 cut(s) | 11, 142, 148, 208, 672, 723 |
| AluI | AGCT | 6 cut(s) | 11, 142, 148, 208, 672, 723 |
| Alw26I | GTCTC | 2 cut(s) | 332, 933 |
| AlwI | GGATC | 6 cut(s) | 566, 579, 708, 721, 752, 765 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 379, 723 |
| Ama87I | CYCGRG | 1 cut(s) | 67 |
| AoxI | GGCC | 2 cut(s) | 518, 622 |
| ApeKI | GCWGC | 7 cut(s) | 79, 379, 429, 508, 628, 720, 1112 |
| ApoI | RAATTY | 2 cut(s) | 455, 825 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 281, 313 |
| AseI | ATTAAT | 1 cut(s) | 89 |
| AspLEI | GCGC | 1 cut(s) | 1081 |
| AspS9I | GGNCC | 3 cut(s) | 408, 467, 944 |
| AsuHPI | GGTGA | 4 cut(s) | 244, 493, 740, 1082 |
| AvaI | CYCGRG | 1 cut(s) | 67 |
| AvaII | GGWCC | 3 cut(s) | 408, 467, 944 |
| BaeGI | GKGCMC | 1 cut(s) | 779 |
| BamHI | GGATCC | 3 cut(s) | 571, 713, 757 |
| BanI | GGYRCC | 2 cut(s) | 776, 1025 |
| BanII | GRGCYC | 1 cut(s) | 647 |
| BbvI | GCAGC | 7 cut(s) | 66, 366, 441, 520, 640, 732, 1099 |
| BccI | CCATC | 1 cut(s) | 49 |
| BceAI | ACGGC | 4 cut(s) | 226, 496, 546, 1039 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 58, 92, 1070, 1104 |
| BciT130I | CCWGG | 1 cut(s) | 832 |
| BcoDI | GTCTC | 2 cut(s) | 332, 933 |
| BfaI | CTAG | 2 cut(s) | 209, 894 |
| BfmI | CTRYAG | 2 cut(s) | 80, 626 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 517 |
| BglII | AGATCT | 1 cut(s) | 73 |
| Bme1390I | CCNGG | 1 cut(s) | 832 |
| Bme18I | GGWCC | 3 cut(s) | 408, 467, 944 |
| BmeT110I | CYCGRG | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 3 cut(s) | 408, 467, 944 |
| BmiI | GGNNCC | 8 cut(s) | 276, 468, 469, 573, 715, 759, 778, 1027 |
| BmrFI | CCNGG | 1 cut(s) | 832 |
| BmrI | ACTGGG | 1 cut(s) | 627 |
| BmsI | GCATC | 1 cut(s) | 827 |
| BmuI | ACTGGG | 1 cut(s) | 627 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 688, 720 |
| BpmI | CTGGAG | 1 cut(s) | 164 |
| Bpu10I | CCTNAGC | 1 cut(s) | 810 |
| BsaHI | GRCGYC | 3 cut(s) | 296, 320, 806 |
| BsaJI | CCNNGG | 4 cut(s) | 576, 831, 906, 1021 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 335, 365, 984, 1014 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 476, 477, 710 |
| Bse118I | RCCGGY | 1 cut(s) | 520 |
| Bse1I | ACTGG | 1 cut(s) | 633 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| BseBI | CCWGG | 1 cut(s) | 832 |
| BseDI | CCNNGG | 4 cut(s) | 576, 831, 906, 1021 |
| BseGI | GGATG | 2 cut(s) | 139, 818 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 476, 477, 710 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BseMII | CTCAG | 2 cut(s) | 653, 801 |
| BseNI | ACTGG | 1 cut(s) | 633 |
| BseRI | GAGGAG | 8 cut(s) | 37, 140, 143, 152, 359, 362, 418, 579 |
| BseSI | GKGCMC | 1 cut(s) | 779 |
| BseXI | GCAGC | 7 cut(s) | 66, 366, 441, 520, 640, 732, 1099 |
| BseYI | CCCAGC | 1 cut(s) | 305 |
| BsgI | GTGCAG | 2 cut(s) | 115, 527 |
| Bsh1236I | CGCG | 1 cut(s) | 107 |
| BshFI | GGCC | 2 cut(s) | 520, 624 |
| BshNI | GGYRCC | 2 cut(s) | 776, 1025 |
| BsiHKCI | CYCGRG | 1 cut(s) | 67 |
| BsiSI | CCGG | 4 cut(s) | 278, 497, 521, 1040 |
| BsiWI | CGTACG | 1 cut(s) | 300 |
| BslFI | GGGAC | 1 cut(s) | 480 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 476, 477, 710 |
| BsmAI | GTCTC | 2 cut(s) | 332, 933 |
| BsmBI | CGTCTC | 2 cut(s) | 332, 933 |
| BsmFI | GGGAC | 1 cut(s) | 480 |
| BsmI | GAATGC | 1 cut(s) | 907 |
| BsnI | GGCC | 2 cut(s) | 520, 624 |
| BsoBI | CYCGRG | 1 cut(s) | 67 |
| Bsp1286I | GDGCHC | 2 cut(s) | 647, 779 |
| Bsp143I | GATC | 5 cut(s) | 73, 215, 571, 713, 757 |
| Bsp19I | CCATGG | 1 cut(s) | 906 |
| BspANI | GGCC | 2 cut(s) | 520, 624 |
| BspCNI | CTCAG | 2 cut(s) | 652, 802 |
| BspFNI | CGCG | 1 cut(s) | 107 |
| BspLI | GGNNCC | 8 cut(s) | 276, 468, 469, 573, 715, 759, 778, 1027 |
| BspMAI | CTGCAG | 2 cut(s) | 84, 630 |
| BspPI | GGATC | 6 cut(s) | 566, 579, 708, 721, 752, 765 |
| BspT107I | GGYRCC | 2 cut(s) | 776, 1025 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| BsrFI | RCCGGY | 1 cut(s) | 520 |
| BsrI | ACTGG | 1 cut(s) | 633 |
| BssAI | RCCGGY | 1 cut(s) | 520 |
| BssECI | CCNNGG | 4 cut(s) | 576, 831, 906, 1021 |
| BssMI | GATC | 5 cut(s) | 73, 215, 571, 713, 757 |
| BssNI | GRCGYC | 3 cut(s) | 296, 320, 806 |
| BssT1I | CCWWGG | 2 cut(s) | 576, 906 |
| Bst2UI | CCWGG | 1 cut(s) | 832 |
| Bst4CI | ACNGT | 1 cut(s) | 944 |
| Bst6I | CTCTTC | 4 cut(s) | 249, 353, 435, 711 |
| BstACI | GRCGYC | 3 cut(s) | 296, 320, 806 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 379 |
| BstC8I | GCNNGC | 7 cut(s) | 30, 206, 522, 543, 626, 816, 1059 |
| BstDEI | CTNAG | 2 cut(s) | 639, 810 |
| BstDSI | CCRYGG | 2 cut(s) | 906, 1021 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 708 |
| BstF5I | GGATG | 2 cut(s) | 139, 818 |
| BstFNI | CGCG | 1 cut(s) | 107 |
| BstHHI | GCGC | 1 cut(s) | 1081 |
| BstKTI | GATC | 5 cut(s) | 76, 218, 574, 716, 760 |
| BstMAI | GTCTC | 2 cut(s) | 332, 933 |
| BstMBI | GATC | 5 cut(s) | 73, 215, 571, 713, 757 |
| BstNI | CCWGG | 1 cut(s) | 832 |
| BstNSI | RCATGY | 2 cut(s) | 818, 853 |
| BstSCI | CCNGG | 1 cut(s) | 830 |
| BstSFI | CTRYAG | 2 cut(s) | 80, 626 |
| BstSLI | GKGCMC | 1 cut(s) | 779 |
| BstUI | CGCG | 1 cut(s) | 107 |
| BstV1I | GCAGC | 7 cut(s) | 66, 366, 441, 520, 640, 732, 1099 |
| BstX2I | RGATCY | 4 cut(s) | 73, 571, 713, 757 |
| BstYI | RGATCY | 4 cut(s) | 73, 571, 713, 757 |
| BsuRI | GGCC | 2 cut(s) | 520, 624 |
| BtgI | CCRYGG | 2 cut(s) | 906, 1021 |
| BtsCI | GGATG | 2 cut(s) | 139, 818 |
| Cac8I | GCNNGC | 7 cut(s) | 30, 206, 522, 543, 626, 816, 1059 |
| CaiI | CAGNNNCTG | 2 cut(s) | 379, 723 |
| CfoI | GCGC | 1 cut(s) | 1081 |
| Cfr10I | RCCGGY | 1 cut(s) | 520 |
| Cfr13I | GGNCC | 3 cut(s) | 408, 467, 944 |
| CseI | GACGC | 6 cut(s) | 96, 113, 285, 309, 385, 814 |
| Csp6I | GTAC | 2 cut(s) | 64, 301 |
| CviAII | CATG | 3 cut(s) | 815, 850, 907 |
| CviQI | GTAC | 2 cut(s) | 64, 301 |
| DdeI | CTNAG | 2 cut(s) | 639, 810 |
| DpnI | GATC | 5 cut(s) | 75, 217, 573, 715, 759 |
| DpnII | GATC | 5 cut(s) | 73, 215, 571, 713, 757 |
| DraIII | CACNNNGTG | 1 cut(s) | 662 |
| EaeI | YGGCCR | 1 cut(s) | 518 |
| Eam1104I | CTCTTC | 4 cut(s) | 249, 353, 435, 711 |
| EarI | CTCTTC | 4 cut(s) | 249, 353, 435, 711 |
| Eco130I | CCWWGG | 2 cut(s) | 576, 906 |
| Eco24I | GRGCYC | 1 cut(s) | 647 |
| Eco47I | GGWCC | 3 cut(s) | 408, 467, 944 |
| Eco57I | CTGAAG | 2 cut(s) | 459, 855 |
| Eco88I | CYCGRG | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 708 |
| EcoO109I | RGGNCCY | 1 cut(s) | 467 |
| EcoRII | CCWGG | 1 cut(s) | 830 |
| EcoT14I | CCWWGG | 2 cut(s) | 576, 906 |
| EcoT22I | ATGCAT | 1 cut(s) | 820 |
| EcoT38I | GRGCYC | 1 cut(s) | 647 |
| ErhI | CCWWGG | 2 cut(s) | 576, 906 |
| Esp3I | CGTCTC | 2 cut(s) | 332, 933 |
| FaeI | CATG | 3 cut(s) | 818, 853, 910 |
| FaqI | GGGAC | 1 cut(s) | 480 |
| FatI | CATG | 3 cut(s) | 814, 849, 906 |
| FauI | CCCGC | 1 cut(s) | 1092 |
| FblI | GTMKAC | 1 cut(s) | 186 |
| FokI | GGATG | 2 cut(s) | 146, 805 |
| FriOI | GRGCYC | 1 cut(s) | 647 |
| FspBI | CTAG | 2 cut(s) | 209, 894 |
| FspI | TGCGCA | 1 cut(s) | 1080 |
| GlaI | GCGC | 1 cut(s) | 1080 |
| GsaI | CCCAGC | 1 cut(s) | 309 |
| GsuI | CTGGAG | 1 cut(s) | 164 |
| HaeIII | GGCC | 2 cut(s) | 520, 624 |
| HapII | CCGG | 4 cut(s) | 278, 497, 521, 1040 |
| HgaI | GACGC | 6 cut(s) | 96, 113, 285, 309, 385, 814 |
| HhaI | GCGC | 1 cut(s) | 1081 |
| Hin1I | GRCGYC | 3 cut(s) | 296, 320, 806 |
| Hin1II | CATG | 3 cut(s) | 818, 853, 910 |
| Hin6I | GCGC | 1 cut(s) | 1079 |
| HinP1I | GCGC | 1 cut(s) | 1079 |
| HinfI | GANTC | 5 cut(s) | 151, 177, 266, 653, 969 |
| HpaII | CCGG | 4 cut(s) | 278, 497, 521, 1040 |
| HphI | GGTGA | 4 cut(s) | 244, 493, 740, 1082 |
| Hpy166II | GTNNAC | 2 cut(s) | 187, 701 |
| Hpy188I | TCNGA | 7 cut(s) | 54, 182, 215, 333, 412, 688, 874 |
| Hpy188III | TCNNGA | 2 cut(s) | 755, 822 |
| Hpy8I | GTNNAC | 2 cut(s) | 187, 701 |
| Hpy99I | CGWCG | 8 cut(s) | 107, 112, 266, 301, 325, 328, 337, 679 |
| HpyAV | CCTTC | 9 cut(s) | 11, 283, 358, 577, 794, 879, 879, 959, 982 |
| HpyCH4III | ACNGT | 1 cut(s) | 944 |
| HpyCH4IV | ACGT | 2 cut(s) | 47, 1074 |
| HpyCH4V | TGCA | 7 cut(s) | 82, 96, 373, 508, 628, 818, 1115 |
| HpyF3I | CTNAG | 2 cut(s) | 639, 810 |
| HpySE526I | ACGT | 2 cut(s) | 47, 1074 |
| Hsp92I | GRCGYC | 3 cut(s) | 296, 320, 806 |
| Hsp92II | CATG | 3 cut(s) | 818, 853, 910 |
| HspAI | GCGC | 1 cut(s) | 1079 |
| KflI | GGGWCCC | 1 cut(s) | 467 |
| KroI | GCCGGC | 1 cut(s) | 520 |
| KroNI | GCCGGC | 1 cut(s) | 522 |
| Kzo9I | GATC | 5 cut(s) | 73, 215, 571, 713, 757 |
| LmnI | GCTCC | 4 cut(s) | 139, 145, 192, 280 |
| Lsp1109I | GCAGC | 7 cut(s) | 66, 366, 441, 520, 640, 732, 1099 |
| LweI | GCATC | 1 cut(s) | 827 |
| MaeI | CTAG | 2 cut(s) | 209, 894 |
| MaeII | ACGT | 2 cut(s) | 47, 1074 |
| MaeIII | GTNAC | 4 cut(s) | 232, 526, 654, 1070 |
| MalI | GATC | 5 cut(s) | 75, 217, 573, 715, 759 |
| MboI | GATC | 5 cut(s) | 73, 215, 571, 713, 757 |
| MboII | GAAGA | 6 cut(s) | 186, 210, 266, 370, 452, 698 |
| MflI | RGATCY | 4 cut(s) | 73, 571, 713, 757 |
| MhlI | GDGCHC | 2 cut(s) | 647, 779 |
| MluCI | AATT | 2 cut(s) | 455, 825 |
| MluI | ACGCGT | 1 cut(s) | 105 |
| MlyI | GAGTC | 2 cut(s) | 260, 662 |
| MmeI | TCCRAC | 2 cut(s) | 356, 646 |
| Mph1103I | ATGCAT | 1 cut(s) | 820 |
| MroNI | GCCGGC | 1 cut(s) | 520 |
| MseI | TTAA | 1 cut(s) | 89 |
| MspA1I | CMGCKG | 1 cut(s) | 723 |
| MspI | CCGG | 4 cut(s) | 278, 497, 521, 1040 |
| MspR9I | CCNGG | 1 cut(s) | 832 |
| Mva1269I | GAATGC | 1 cut(s) | 907 |
| MvaI | CCWGG | 1 cut(s) | 832 |
| MvnI | CGCG | 1 cut(s) | 107 |
| NaeI | GCCGGC | 1 cut(s) | 522 |
| NcoI | CCATGG | 1 cut(s) | 906 |
| NdeII | GATC | 5 cut(s) | 73, 215, 571, 713, 757 |
| NgoMIV | GCCGGC | 1 cut(s) | 520 |
| NlaIII | CATG | 3 cut(s) | 818, 853, 910 |
| NlaIV | GGNNCC | 8 cut(s) | 276, 468, 469, 573, 715, 759, 778, 1027 |
| NmeAIII | GCCGAG | 1 cut(s) | 248 |
| NmuCI | GTSAC | 4 cut(s) | 232, 526, 654, 1070 |
| NsbI | TGCGCA | 1 cut(s) | 1080 |
| NsiI | ATGCAT | 1 cut(s) | 820 |
| NspI | RCATGY | 2 cut(s) | 818, 853 |
| PaeI | GCATGC | 1 cut(s) | 818 |
| PciI | ACATGT | 1 cut(s) | 849 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 329 |
| PctI | GAATGC | 1 cut(s) | 907 |
| PdiI | GCCGGC | 1 cut(s) | 522 |
| PfeI | GAWTC | 3 cut(s) | 151, 177, 969 |
| Pfl23II | CGTACG | 1 cut(s) | 300 |
| PleI | GAGTC | 2 cut(s) | 260, 661 |
| PpsI | GAGTC | 2 cut(s) | 260, 661 |
| PpuMI | RGGWCCY | 1 cut(s) | 467 |
| PscI | ACATGT | 1 cut(s) | 849 |
| PshBI | ATTAAT | 1 cut(s) | 89 |
| Psp5II | RGGWCCY | 1 cut(s) | 467 |
| Psp6I | CCWGG | 1 cut(s) | 830 |
| PspFI | CCCAGC | 1 cut(s) | 305 |
| PspGI | CCWGG | 1 cut(s) | 830 |
| PspLI | CGTACG | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 8 cut(s) | 276, 468, 469, 573, 715, 759, 778, 1027 |
| PspPI | GGNCC | 3 cut(s) | 408, 467, 944 |
| PspPPI | RGGWCCY | 1 cut(s) | 467 |
| PstI | CTGCAG | 2 cut(s) | 84, 630 |
| PstNI | CAGNNNCTG | 2 cut(s) | 379, 723 |
| PsuI | RGATCY | 4 cut(s) | 73, 571, 713, 757 |
| PvuII | CAGCTG | 1 cut(s) | 723 |
| RsaI | GTAC | 2 cut(s) | 65, 302 |
| RsaNI | GTAC | 2 cut(s) | 64, 301 |
| SaqAI | TTAA | 1 cut(s) | 89 |
| Sau3AI | GATC | 5 cut(s) | 73, 215, 571, 713, 757 |
| Sau96I | GGNCC | 3 cut(s) | 408, 467, 944 |
| SchI | GAGTC | 2 cut(s) | 260, 662 |
| ScrFI | CCNGG | 1 cut(s) | 832 |
| SduI | GDGCHC | 2 cut(s) | 647, 779 |
| SfaNI | GCATC | 1 cut(s) | 827 |
| SfcI | CTRYAG | 2 cut(s) | 80, 626 |
| SinI | GGWCC | 3 cut(s) | 408, 467, 944 |
| SphI | GCATGC | 1 cut(s) | 818 |
| Sse9I | AATT | 2 cut(s) | 455, 825 |
| SspMI | CTAG | 2 cut(s) | 209, 894 |
| StyD4I | CCNGG | 1 cut(s) | 830 |
| StyI | CCWWGG | 2 cut(s) | 576, 906 |
| TaaI | ACNGT | 1 cut(s) | 944 |
| TaiI | ACGT | 2 cut(s) | 50, 1077 |
| TaqI | TCGA | 2 cut(s) | 116, 224 |
| TasI | AATT | 2 cut(s) | 455, 825 |
| TauI | GCSGC | 7 cut(s) | 275, 284, 287, 296, 385, 395, 536 |
| TfiI | GAWTC | 3 cut(s) | 151, 177, 969 |
| Tru1I | TTAA | 1 cut(s) | 89 |
| Tru9I | TTAA | 1 cut(s) | 89 |
| TseFI | GTSAC | 4 cut(s) | 232, 526, 654, 1070 |
| TseI | GCWGC | 7 cut(s) | 79, 379, 429, 508, 628, 720, 1112 |
| Tsp45I | GTSAC | 4 cut(s) | 232, 526, 654, 1070 |
| TspGWI | ACGGA | 2 cut(s) | 350, 356 |
| VpaK11BI | GGWCC | 3 cut(s) | 408, 467, 944 |
| VspI | ATTAAT | 1 cut(s) | 89 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 708 |
| XapI | RAATTY | 2 cut(s) | 455, 825 |
| XceI | RCATGY | 2 cut(s) | 818, 853 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 838 |
| XmiI | GTMKAC | 1 cut(s) | 186 |
| XspI | CTAG | 2 cut(s) | 209, 894 |
| Zsp2I | ATGCAT | 1 cut(s) | 820 |