Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010347

Physical Location & Seq

Genomic Coordinates Forward (+)

4335480 .. 4338123

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1060400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGTGAAGCTAATGAATGGAGAAGGAGAGCAATGGAAAATCTGTCTCTGGAAATGGATAAGTACCCGAGAGATCTGCTGCAGAGGTTAATGTGCAGCAGAAGCAACGACGCGACGACGCGGTTACAATATGCGGACGCTAACGAGGAAGAGGAGTCGGATGAGCTGGAGTTGAATCTCGGGCTTTCGTTAGGCGGTCGGTTCGGGGTCGACAAGAGCGCGAAAAACAAGCTAATCCGATCTACGTCGATTGCCGGGACGATGCCGTTTGTGAGGGACGACAACGACGCGACGGCGCCGACGTACACGGCGGGGCTGATGAGGACGTCTTCGCTTCCGGCCGAGACAGAGGAGGAGTGGAGGAAGAGGAAGGAGTTACAGACGCTGAGGCGGTTGGAGGCGAAAAGGAGGAGGTCGGAGAAGCAGAGGAACTCAAGGACAGAAAAAGAAGGGGGTTCTGTGGAGGAGGAAAAGCGCGAACTTGAGGGTTCAATTGGGCCCAATTCGGGCGGTGTCAGGGGTAATCGGACGGCGGGCCCGCCTTTCGGGTTGCCTAGCTGGGTAGCGGCAGCAGTTGCTAGGCAAGCTGCTAGTGGTGGCGGTGGCGGAGTGGGTGCAAATGCATTGGTGAAATTAAAAGGTGAGAATTTGAGTGGTTTGCAAGGATTTGGAAGGCGACCCAATTCGCAGGGCTCGGCGGAGTCCCTAGGCGGAAGCTCGTCGGGGATGTCGGAATTGGAGAGTAAACCTCTTCAAGATGGAGTCTTAGGAACCAGTGGTTGCGGTGAAGCAAGAAGCGCTGTACCCTCTAGCAACCAGTTGCTGCAAGAACGAAGTAATCAGGACAACGCTGTGGGCACTTCAGGCACAAGAACAGCAGATGATGCATCCAAAACTCCCAAACCCGACATAGAAAACCCATCTAAGAAGCCTAGTTCGCAAGAAAACAGCGAAAGGGAAACGAGGAGGAACGCCATGGAGGACATGCCGTGTGTTTTCACAATAGGAGATGGCCCAAATGGTAGAAAAGTTGAGGGAATTCTGTACAGATATGGGAAGGGACAGGAAGTCAGAATAATGTGTGTATGCCATGGAAGCTTTCTGTCTCCGGCAGAGTTCGTGAAGCATGCAGGAGGGAGTGATGTCGCTCACCCGCTTAGGCATATTGTTGTAAACCCGGCTGCCGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

398

Amino Acids

42.82

Weight (kDa)

6.95

Isoelectric Point (pI)

61.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EAR	PF07897	51 - 86	1.4e-15	Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP	PF16136	106 - 142	5.3e-21	Putative nuclear localisation signal in Ninja/AFP proteins
TDBD	PF16135	357 - 390	4.3e-08	Tify domain binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13740
fragaria_vesca	FvH4_4g29910 FvH4_4g29910
malus_domestica	MD13G1061900.v1.1 MD16G1060400.v1.1
prunus_persica	Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1
pyrus_communis	pycom13g05440 pycom16g05260
rosa_chinensis	RchiOBHm_Chr4g0438171
rosa_laevigata	RLG00000006382
rosa_multiflora	Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379310
rosa_rugosa	Rorug04G0308200
rosa_samantha	Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800
rosa_wichuraiana	Rw0G006360 Rw0G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	5 cut(s)	113, 121, 221, 290, 477
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	3 cut(s)	646, 1038, 1188
AcuI	CTGAAG	1 cut(s)	846
AcyI	GRCGYC	2 cut(s)	296, 326
AfaI	GTAC	4 cut(s)	65, 305, 804, 1046
AfeI	AGCGCT	1 cut(s)	799
AfiI	CCNNNNNNNGG	2 cut(s)	506, 545
AgsI	TTSAA	3 cut(s)	175, 492, 755
AhdI	GACNNNNNGTC	1 cut(s)	1067
AluBI	AGCT	7 cut(s)	11, 166, 232, 558, 587, 717, 1098
AluI	AGCT	7 cut(s)	11, 166, 232, 558, 587, 717, 1098
Alw26I	GTCTC	3 cut(s)	51, 338, 1110
AlwNI	CAGNNNCTG	2 cut(s)	385, 823
Ama87I	CYCGRG	2 cut(s)	67, 179
Aor51HI	AGCGCT	1 cut(s)	799
AoxI	GGCC	4 cut(s)	339, 497, 535, 1012
ApaI	GGGCCC	2 cut(s)	501, 539
ApeKI	GCWGC	6 cut(s)	79, 96, 569, 587, 823, 1181
ApoI	RAATTY	3 cut(s)	646, 1038, 1188
AspA2I	CCTAGG	1 cut(s)	706
AspLEI	GCGC	4 cut(s)	221, 298, 477, 800
AspS9I	GGNCC	5 cut(s)	497, 498, 535, 536, 1013
AsuC2I	CCSGG	2 cut(s)	256, 1178
AsuHPI	GGTGA	5 cut(s)	17, 640, 653, 797, 1142
AvaI	CYCGRG	2 cut(s)	67, 179
AvrII	CCTAGG	1 cut(s)	706
BaeGI	GKGCMC	3 cut(s)	501, 539, 860
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	3 cut(s)	501, 539, 695
BbsI	GAAGAC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	386
BbvI	GCAGC	6 cut(s)	66, 108, 574, 581, 810, 1168
BccI	CCATC	3 cut(s)	752, 928, 1004
BceAI	ACGGC	5 cut(s)	250, 309, 324, 546, 973
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcnI	CCSGG	2 cut(s)	256, 1178
BcoDI	GTCTC	3 cut(s)	51, 338, 1110
BfaI	CTAG	6 cut(s)	555, 579, 591, 707, 810, 933
BfmI	CTRYAG	1 cut(s)	80
BfoI	RGCGCY	2 cut(s)	299, 801
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	7 cut(s)	80, 97, 567, 570, 588, 824, 1182
BlnI	CCTAGG	1 cut(s)	706
BlsI	GCNGC	7 cut(s)	81, 98, 568, 571, 589, 825, 1183
Bme1390I	CCNGG	2 cut(s)	256, 1178
BmeRI	GACNNNNNGTC	1 cut(s)	1067
BmeT110I	CYCGRG	2 cut(s)	67, 179
BmgT120I	GGNCC	5 cut(s)	497, 498, 535, 536, 1013
BmiI	GGNNCC	4 cut(s)	297, 499, 537, 772
BmrFI	CCNGG	2 cut(s)	256, 1178
BmsI	GCATC	3 cut(s)	252, 874, 896
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	733, 765
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	2 cut(s)	386, 1157
BpuEI	CTTGAG	2 cut(s)	418, 503
BpuMI	CCSGG	2 cut(s)	256, 1178
BsaHI	GRCGYC	2 cut(s)	296, 326
BsaJI	CCNNGG	3 cut(s)	706, 975, 1090
Bsc4I	CCNNNNNNNGG	2 cut(s)	506, 545
Bse1I	ACTGG	2 cut(s)	774, 817
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	706, 975, 1090
BseGI	GGATG	3 cut(s)	166, 732, 887
BseLI	CCNNNNNNNGG	2 cut(s)	506, 545
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	2 cut(s)	774, 817
BseRI	GAGGAG	6 cut(s)	167, 365, 368, 424, 479, 979
BseSI	GKGCMC	3 cut(s)	501, 539, 860
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	6 cut(s)	66, 108, 574, 581, 810, 1168
BseYI	CCCAGC	1 cut(s)	558
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	5 cut(s)	113, 121, 221, 290, 477
Bsh1285I	CGRYCG	2 cut(s)	199, 342
BshFI	GGCC	4 cut(s)	341, 499, 537, 1014
BshNI	GGYRCC	1 cut(s)	295
BsiEI	CGRYCG	2 cut(s)	199, 342
BsiHKCI	CYCGRG	2 cut(s)	67, 179
BsiSI	CCGG	4 cut(s)	255, 338, 1109, 1178
BslFI	GGGAC	4 cut(s)	271, 290, 688, 1074
BslI	CCNNNNNNNGG	2 cut(s)	506, 545
BsmAI	GTCTC	3 cut(s)	51, 338, 1110
BsmFI	GGGAC	4 cut(s)	271, 290, 688, 1074
BsnI	GGCC	4 cut(s)	341, 499, 537, 1014
BsoBI	CYCGRG	2 cut(s)	67, 179
Bsp120I	GGGCCC	2 cut(s)	497, 535
Bsp1286I	GDGCHC	4 cut(s)	501, 539, 695, 860
Bsp1407I	TGTACA	1 cut(s)	1044
Bsp143I	GATC	2 cut(s)	73, 239
Bsp19I	CCATGG	2 cut(s)	975, 1090
BspANI	GGCC	4 cut(s)	341, 499, 537, 1014
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	5 cut(s)	113, 121, 221, 290, 477
BspLI	GGNNCC	4 cut(s)	297, 499, 537, 772
BspMAI	CTGCAG	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	1044
BsrI	ACTGG	2 cut(s)	774, 817
BssECI	CCNNGG	3 cut(s)	706, 975, 1090
BssMI	GATC	2 cut(s)	73, 239
BssNI	GRCGYC	2 cut(s)	296, 326
BssT1I	CCWWGG	3 cut(s)	706, 975, 1090
Bst6I	CTCTTC	3 cut(s)	144, 359, 756
BstACI	GRCGYC	2 cut(s)	296, 326
BstAPI	GCANNNNNTGC	2 cut(s)	575, 884
BstAUI	TGTACA	1 cut(s)	1044
BstC8I	GCNNGC	4 cut(s)	535, 539, 585, 1128
BstDEI	CTNAG	4 cut(s)	386, 766, 924, 1157
BstDSI	CCRYGG	2 cut(s)	975, 1090
BstF5I	GGATG	3 cut(s)	166, 732, 887
BstFNI	CGCG	5 cut(s)	113, 121, 221, 290, 477
BstH2I	RGCGCY	2 cut(s)	299, 801
BstHHI	GCGC	4 cut(s)	221, 298, 477, 800
BstKTI	GATC	2 cut(s)	76, 242
BstMAI	GTCTC	3 cut(s)	51, 338, 1110
BstMBI	GATC	2 cut(s)	73, 239
BstMCI	CGRYCG	2 cut(s)	199, 342
BstMWI	GCNNNNNNNGC	8 cut(s)	102, 575, 584, 797, 864, 884, 937, 1095
BstNSI	RCATGY	2 cut(s)	988, 1130
BstSCI	CCNGG	2 cut(s)	254, 1176
BstSFI	CTRYAG	1 cut(s)	80
BstSLI	GKGCMC	3 cut(s)	501, 539, 860
BstUI	CGCG	5 cut(s)	113, 121, 221, 290, 477
BstV1I	GCAGC	6 cut(s)	66, 108, 574, 581, 810, 1168
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	341, 499, 537, 1014
BtgI	CCRYGG	2 cut(s)	975, 1090
BtsCI	GGATG	3 cut(s)	166, 732, 887
BtsIMutI	CAGTG	1 cut(s)	781
Cac8I	GCNNGC	4 cut(s)	535, 539, 585, 1128
CaiI	CAGNNNCTG	2 cut(s)	385, 823
CfoI	GCGC	4 cut(s)	221, 298, 477, 800
Cfr13I	GGNCC	5 cut(s)	497, 498, 535, 536, 1013
CseI	GACGC	5 cut(s)	119, 127, 146, 296, 391
Csp6I	GTAC	4 cut(s)	64, 304, 803, 1045
CviAII	CATG	4 cut(s)	976, 985, 1091, 1127
CviQI	GTAC	4 cut(s)	64, 304, 803, 1045
DdeI	CTNAG	4 cut(s)	386, 766, 924, 1157
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	2 cut(s)	75, 241
DpnII	GATC	2 cut(s)	73, 239
DriI	GACNNNNNGTC	1 cut(s)	1067
EaeI	YGGCCR	1 cut(s)	339
EagI	CGGCCG	1 cut(s)	339
Eam1104I	CTCTTC	3 cut(s)	144, 359, 756
Eam1105I	GACNNNNNGTC	1 cut(s)	1067
EarI	CTCTTC	3 cut(s)	144, 359, 756
EciI	GGCGGA	3 cut(s)	621, 713, 726
EclXI	CGGCCG	1 cut(s)	339
Eco130I	CCWWGG	3 cut(s)	706, 975, 1090
Eco24I	GRGCYC	3 cut(s)	501, 539, 695
Eco47III	AGCGCT	1 cut(s)	799
Eco52I	CGGCCG	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	846
Eco88I	CYCGRG	2 cut(s)	67, 179
EcoRI	GAATTC	1 cut(s)	1038
EcoT14I	CCWWGG	3 cut(s)	706, 975, 1090
EcoT22I	ATGCAT	2 cut(s)	625, 889
EcoT38I	GRGCYC	3 cut(s)	501, 539, 695
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	3 cut(s)	706, 975, 1090
FaeI	CATG	4 cut(s)	979, 988, 1094, 1130
FaiI	YATR	9 cut(s)	132, 911, 977, 986, 1053, 1087, 1092, 1128, 1164
FaqI	GGGAC	4 cut(s)	271, 290, 688, 1074
FatI	CATG	4 cut(s)	975, 984, 1090, 1126
FauI	CCCGC	4 cut(s)	304, 526, 546, 1161
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	7 cut(s)	80, 97, 567, 570, 588, 824, 1182
FokI	GGATG	3 cut(s)	173, 739, 874
FriOI	GRGCYC	3 cut(s)	501, 539, 695
Fsp4HI	GCNGC	7 cut(s)	80, 97, 567, 570, 588, 824, 1182
FspBI	CTAG	6 cut(s)	555, 579, 591, 707, 810, 933
GlaI	GCGC	4 cut(s)	220, 297, 476, 799
GluI	GCNGC	7 cut(s)	80, 97, 567, 570, 588, 824, 1182
GsaI	CCCAGC	1 cut(s)	562
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	2 cut(s)	299, 801
HaeIII	GGCC	4 cut(s)	341, 499, 537, 1014
HapII	CCGG	4 cut(s)	255, 338, 1109, 1178
HgaI	GACGC	5 cut(s)	119, 127, 146, 296, 391
HhaI	GCGC	4 cut(s)	221, 298, 477, 800
Hin1I	GRCGYC	2 cut(s)	296, 326
Hin1II	CATG	4 cut(s)	979, 988, 1094, 1130
Hin6I	GCGC	4 cut(s)	219, 296, 475, 798
HinP1I	GCGC	4 cut(s)	219, 296, 475, 798
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	1096
HinfI	GANTC	4 cut(s)	155, 175, 701, 762
HpaII	CCGG	4 cut(s)	255, 338, 1109, 1178
HphI	GGTGA	5 cut(s)	17, 640, 653, 797, 1142
Hpy166II	GTNNAC	4 cut(s)	211, 306, 746, 1174
Hpy188I	TCNGA	6 cut(s)	160, 239, 418, 528, 733, 1073
Hpy188III	TCNNGA	4 cut(s)	50, 755, 842, 1120
Hpy8I	GTNNAC	4 cut(s)	211, 306, 746, 1174
Hpy99I	CGWCG	8 cut(s)	113, 118, 121, 250, 290, 295, 304, 724
HpyAV	CCTTC	5 cut(s)	18, 364, 443, 666, 1051
HpyCH4IV	ACGT	3 cut(s)	245, 302, 326
HpyCH4V	TGCA	8 cut(s)	82, 96, 617, 623, 661, 826, 887, 1130
HpyF10VI	GCNNNNNNNGC	8 cut(s)	102, 575, 584, 797, 864, 884, 937, 1095
HpyF3I	CTNAG	4 cut(s)	386, 766, 924, 1157
HpySE526I	ACGT	3 cut(s)	245, 302, 326
Hsp92I	GRCGYC	2 cut(s)	296, 326
Hsp92II	CATG	4 cut(s)	979, 988, 1094, 1130
HspAI	GCGC	4 cut(s)	219, 296, 475, 798
KasI	GGCGCC	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	73, 239
Lsp1109I	GCAGC	6 cut(s)	66, 108, 574, 581, 810, 1168
LweI	GCATC	3 cut(s)	252, 874, 896
MaeI	CTAG	6 cut(s)	555, 579, 591, 707, 810, 933
MaeII	ACGT	3 cut(s)	245, 302, 326
MaeIII	GTNAC	2 cut(s)	123, 375
MalI	GATC	2 cut(s)	75, 241
MboI	GATC	2 cut(s)	73, 239
MboII	GAAGA	4 cut(s)	161, 321, 376, 743
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	4 cut(s)	501, 539, 695, 860
MluCI	AATT	8 cut(s)	492, 502, 632, 646, 682, 734, 1038, 1188
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	3 cut(s)	164, 710, 771
MmeI	TCCRAC	4 cut(s)	138, 375, 396, 711
Mph1103I	ATGCAT	2 cut(s)	625, 889
MseI	TTAA	3 cut(s)	89, 635, 1192
MspI	CCGG	4 cut(s)	255, 338, 1109, 1178
MspR9I	CCNGG	2 cut(s)	256, 1178
MunI	CAATTG	1 cut(s)	492
MvnI	CGCG	5 cut(s)	113, 121, 221, 290, 477
MwoI	GCNNNNNNNGC	8 cut(s)	102, 575, 584, 797, 864, 884, 937, 1095
NarI	GGCGCC	1 cut(s)	296
NciI	CCSGG	2 cut(s)	256, 1178
NcoI	CCATGG	2 cut(s)	975, 1090
NdeII	GATC	2 cut(s)	73, 239
NlaIII	CATG	4 cut(s)	979, 988, 1094, 1130
NlaIV	GGNNCC	4 cut(s)	297, 499, 537, 772
NmeAIII	GCCGAG	2 cut(s)	367, 674
NsiI	ATGCAT	2 cut(s)	625, 889
NspI	RCATGY	2 cut(s)	988, 1130
PaeI	GCATGC	1 cut(s)	1130
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	7 cut(s)	81, 98, 568, 571, 589, 825, 1183
PleI	GAGTC	3 cut(s)	163, 709, 770
PluTI	GGCGCC	1 cut(s)	299
PpsI	GAGTC	3 cut(s)	163, 709, 770
PspFI	CCCAGC	1 cut(s)	558
PspN4I	GGNNCC	4 cut(s)	297, 499, 537, 772
PspOMI	GGGCCC	2 cut(s)	497, 535
PspPI	GGNCC	5 cut(s)	497, 498, 535, 536, 1013
PstI	CTGCAG	1 cut(s)	84
PstNI	CAGNNNCTG	2 cut(s)	385, 823
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	4 cut(s)	65, 305, 804, 1046
RsaNI	GTAC	4 cut(s)	64, 304, 803, 1045
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	89, 635, 1192
SatI	GCNGC	7 cut(s)	80, 97, 567, 570, 588, 824, 1182
Sau3AI	GATC	2 cut(s)	73, 239
Sau96I	GGNCC	5 cut(s)	497, 498, 535, 536, 1013
SchI	GAGTC	3 cut(s)	164, 710, 771
ScrFI	CCNGG	2 cut(s)	256, 1178
SduI	GDGCHC	4 cut(s)	501, 539, 695, 860
SfaNI	GCATC	3 cut(s)	252, 874, 896
SfcI	CTRYAG	1 cut(s)	80
SfoI	GGCGCC	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	433, 482
SmoI	CTYRAG	2 cut(s)	433, 482
SphI	GCATGC	1 cut(s)	1130
Sse9I	AATT	8 cut(s)	492, 502, 632, 646, 682, 734, 1038, 1188
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	6 cut(s)	555, 579, 591, 707, 810, 933
StyD4I	CCNGG	2 cut(s)	254, 1176
StyI	CCWWGG	3 cut(s)	706, 975, 1090
TaiI	ACGT	3 cut(s)	248, 305, 329
TaqI	TCGA	2 cut(s)	210, 248
TasI	AATT	8 cut(s)	492, 502, 632, 646, 682, 734, 1038, 1188
TatI	WGTACW	1 cut(s)	1044
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	3 cut(s)	89, 635, 1192
Tru9I	TTAA	3 cut(s)	89, 635, 1192
TscAI	CASTG	1 cut(s)	781
TseI	GCWGC	6 cut(s)	79, 96, 569, 587, 823, 1181
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	781
XapI	RAATTY	3 cut(s)	646, 1038, 1188
XceI	RCATGY	2 cut(s)	988, 1130
XmaJI	CCTAGG	1 cut(s)	706
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	6 cut(s)	555, 579, 591, 707, 810, 933
ZraI	GACGTC	1 cut(s)	327
Zsp2I	ATGCAT	2 cut(s)	625, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.