Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008960.1

Orthogroup ID

OG0010347

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1519

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008960.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 398 bp

caagaagccctattagtaatcaggatccacgaagcaatcagggcaccacccttcgttctttggggtcattgacgcctgagcatgcatccagaatttccagggctgtcatggaaaacatgtgtaagaagcctaatccttcagaaaataaaggaagggaaactaggacgaatgccatggaggatatgccttgtgttttcacaaaaggagacggtcctaatgggagaaaaatagaaggaatcctataccgatatgggaagggagaggaagtaagaataatgtgtgtatgccacggcacctttctttctccggcagagtttgtgaagcatgcaggaggtggtgacgtcgcgcacccgcttcggcacatagttgtaaaccctgctgcaactgcctttttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

131

Amino Acids

14.3

Weight (kDa)

9.27

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13740
fragaria_vesca	FvH4_4g29910 FvH4_4g29910
malus_domestica	MD13G1061900.v1.1 MD16G1060400.v1.1
prunus_persica	Prupe.1G288000_v2.0.a1 Prupe.1G288000_v2.0.a1
pyrus_communis	pycom13g05440 pycom16g05260
rosa_chinensis	RchiOBHm_Chr4g0438171
rosa_laevigata	RLG00000006382
rosa_multiflora	Rmu_sc0008960.1_g000001 Rmu_sc0015132.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379310
rosa_rugosa	Rorug04G0308200
rosa_samantha	Rh4AG359000 Rh4BG369900 Rh4CG384000 Rh4DG364800
rosa_wichuraiana	Rw0G006360 Rw0G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	344
AccB1I	GGYRCC	2 cut(s)	43, 292
AccII	CGCG	1 cut(s)	346
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	2 cut(s)	19, 32
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	2 cut(s)	73, 341
AflIII	ACRYGT	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	2 cut(s)	19, 32
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	24
BanI	GGYRCC	2 cut(s)	43, 292
BbvI	GCAGC	1 cut(s)	366
BceAI	ACGGC	1 cut(s)	306
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	3 cut(s)	26, 45, 294
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	77
BsaHI	GRCGYC	2 cut(s)	73, 341
BsaJI	CCNNGG	3 cut(s)	98, 173, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	98, 173, 288
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	346
BshNI	GGYRCC	2 cut(s)	43, 292
BsiSI	CCGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	200
BsmBI	CGTCTC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	24
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	346
BspLI	GGNNCC	3 cut(s)	26, 45, 294
BspPI	GGATC	2 cut(s)	19, 32
BspT107I	GGYRCC	2 cut(s)	43, 292
BssECI	CCNNGG	3 cut(s)	98, 173, 288
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	2 cut(s)	73, 341
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	211
BstACI	GRCGYC	2 cut(s)	73, 341
BstC8I	GCNNGC	2 cut(s)	83, 326
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	2 cut(s)	173, 288
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 385
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	3 cut(s)	85, 120, 328
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BtgI	CCRYGG	2 cut(s)	173, 288
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	83, 326
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	81
CviAII	CATG	5 cut(s)	82, 108, 117, 174, 325
CviJI	RGCY	3 cut(s)	8, 103, 129
CviKI_1	RGCY	3 cut(s)	8, 103, 129
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	5 cut(s)	85, 111, 120, 177, 328
FatI	CATG	5 cut(s)	81, 107, 116, 173, 324
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	380
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	2 cut(s)	73, 341
Hin1II	CATG	5 cut(s)	85, 111, 120, 177, 328
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	22, 89
Hpy8I	GTNNAC	1 cut(s)	372
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	5 cut(s)	61, 146, 146, 226, 249
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	85, 328, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 385
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	341
Hsp92I	GRCGYC	2 cut(s)	73, 341
Hsp92II	CATG	5 cut(s)	85, 111, 120, 177, 328
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	9 cut(s)	7, 25, 84, 89, 102, 111, 314, 320, 389
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	3 cut(s)	171, 255, 325
Mph1103I	ATGCAT	1 cut(s)	87
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	2 cut(s)	41, 385
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	5 cut(s)	85, 111, 120, 177, 328
NlaIV	GGNNCC	3 cut(s)	26, 45, 294
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	87
NspI	RCATGY	3 cut(s)	85, 120, 328
PaeI	GCATGC	2 cut(s)	85, 328
PciI	ACATGT	1 cut(s)	116
PctI	GAATGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	381
PscI	ACATGT	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	26, 45, 294
PspPI	GGNCC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	24
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	3 cut(s)	298, 336, 344
SfaNI	GCATC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	211
SphI	GCATGC	2 cut(s)	85, 328
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	344
TasI	AATT	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	3 cut(s)	85, 120, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	105
XspI	CTAG	1 cut(s)	161
ZraI	GACGTC	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.