AT1G14440

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013026
Physical Location & Seq
Reverse (-)
4938754 .. 4941332
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14440.2

Sequence Viewer

Length: 939 bp
ATGGAAATTGCAAGTCAAGAAGATCATGATATGCCCATCCCATTAAACACTACATTTGGTGGTGGTGGTAGTCATGGTCACATGATCCATCATCATGATCATCATGCTGCTAATTCTGCTCCTCCAACTCACAACAACAACAATACTACTCAACCACCTCCAATGCCGTTACATGGTAATGGTCATGGCAACAATTATGATCATCATCATCATCAAGATCCTCATCATGTTGGTTACAACGCTATCATCAAGAAGCCTATGATAAAGTACAAGGAGTGTCTCAAGAACCATGCAGCAGCTATGGGAGGCAATGCTACTGATGGGTGTGGAGAGTTTATGCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGCTCAGCTTGCAATTGCCACAGGAACTTCCATAGAAAAGAAGTGGAAGGCGAACTCGCAGCCACCGCCATGTCCCCTTACCACCAACACCCTCCACACCGAAAACTCATGCTCAACCACCAAAAGATCAGATCAGCTATGCCACACCAAATGATCATGCCCATTGGAGTCTCTAACTACCGGTACATGCATAACAACTCCGAGTCCGAGGACTTTATGGAGGAAGATGGCGTAACCACCGCATCTAGATCGCTACCAAACCTGCCATACAACCAGAAGAAGAGGTTCAGGACAAAGTTCACGCCGGAACAGAAGGAGAAGATGCTTAGTTTTGCTGAGAAAGTTGGGTGGAAAATACAAAGGCAAGAAGATTGTGTTGTTCAAAGGTTTTGTGAAGAGATTGGAGTGAAGAGAAGAGTGCTTAAGGTTTGGATGCACAACAACAAGATCCATTTCTCCAAGAAGAACAACATTAACCTCGAAGACAACGACAACGAAAAGATCAACAATCTCAACAATGTTGATCTGTCCGGTAATAACGACATGACTAAGATCGTCCCATGA

Protein Analysis

312

Amino Acids

35.48

Weight (kDa)

7.17

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 88 - 140 5e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca FvH4_5g27650
malus_domestica MD15G1443500.v1.1
prunus_persica Prupe.1G586000_v2.0.a1
pyrus_communis pycom08g21540
rosa_chinensis RchiOBHm_Chr7g0219261
rosa_laevigata RLG00000002301
rosa_multiflora Rmu_sc0009785.1_g000021
rosa_roxburghii Rroxscaffold_3G00240110
rosa_rugosa Rorug07G0183000
rosa_samantha Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana Rw7G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 645
AciI CCGC 2 cut(s) 441, 615
AclWI GGATC 3 cut(s) 79, 212, 817
AfaI GTAC 2 cut(s) 269, 560
AfiI CCNNNNNNNGG 1 cut(s) 173
AflII CTTAAG 1 cut(s) 797
AgeI ACCGGT 1 cut(s) 555
AgsI TTSAA 1 cut(s) 758
AluBI AGCT 3 cut(s) 299, 383, 512
AluI AGCT 3 cut(s) 299, 383, 512
Alw26I GTCTC 2 cut(s) 284, 550
AlwI GGATC 3 cut(s) 79, 212, 817
ApeKI GCWGC 4 cut(s) 107, 293, 296, 434
AsiGI ACCGGT 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 659
AsuHPI GGTGA 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 864
BbvI GCAGC 4 cut(s) 94, 305, 308, 446
BccI CCATC 5 cut(s) 44, 96, 314, 347, 596
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 606, 640
BclI TGATCA 3 cut(s) 97, 199, 528
BcoDI GTCTC 2 cut(s) 284, 550
BfaI CTAG 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 797
BfuAI ACCTGC 1 cut(s) 645
BisI GCNGC 4 cut(s) 108, 294, 297, 435
BlpI GCTNAGC 1 cut(s) 379
BlsI GCNGC 4 cut(s) 109, 295, 298, 436
BmiI GGNNCC 1 cut(s) 358
BmsI GCATC 3 cut(s) 626, 687, 798
BpiI GAAGAC 1 cut(s) 864
Bpu1102I GCTNAGC 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 266
BsaBI GATNNNNATC 2 cut(s) 204, 222
BsaJI CCNNGG 1 cut(s) 582
BsaWI WCCGGW 2 cut(s) 555, 905
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 555
Bse3DI GCAATG 1 cut(s) 316
Bse8I GATNNNNATC 2 cut(s) 204, 222
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 2 cut(s) 36, 813
BseJI GATNNNNATC 2 cut(s) 204, 222
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 393, 702
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 4 cut(s) 94, 305, 308, 446
BshTI ACCGGT 1 cut(s) 555
BsiSI CCGG 3 cut(s) 556, 680, 906
BslFI GGGAC 2 cut(s) 433, 917
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 284, 550
BsmFI GGGAC 2 cut(s) 433, 917
Bsp1720I GCTNAGC 1 cut(s) 379
BspACI CCGC 2 cut(s) 441, 615
BspCNI CTCAG 2 cut(s) 392, 703
BspHI TCATGA 2 cut(s) 25, 94
BspLI GGNNCC 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 645
BspPI GGATC 3 cut(s) 79, 212, 817
BspTI CTTAAG 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 555
BssAI RCCGGY 1 cut(s) 555
BssECI CCNNGG 1 cut(s) 582
Bst6I CTCTTC 4 cut(s) 650, 765, 779, 784
BstAFI CTTAAG 1 cut(s) 797
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 4 cut(s) 379, 701, 711, 924
BstF5I GGATG 2 cut(s) 36, 813
BstMAI GTCTC 2 cut(s) 284, 550
BstMWI GCNNNNNNNGC 3 cut(s) 116, 384, 440
BstNSI RCATGY 1 cut(s) 565
BstV1I GCAGC 4 cut(s) 94, 305, 308, 446
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 2 cut(s) 217, 822
BstYI RGATCY 2 cut(s) 217, 822
BtsCI GGATG 2 cut(s) 36, 813
BveI ACCTGC 1 cut(s) 645
Cac8I GCNNGC 1 cut(s) 385
CciI TCATGA 2 cut(s) 25, 94
Cfr10I RCCGGY 1 cut(s) 555
Csp6I GTAC 2 cut(s) 268, 559
CspAI ACCGGT 1 cut(s) 555
CviJI RGCY 7 cut(s) 256, 299, 357, 368, 383, 437, 512
CviKI_1 RGCY 7 cut(s) 256, 299, 357, 368, 383, 437, 512
CviQI GTAC 2 cut(s) 268, 559
DdeI CTNAG 4 cut(s) 379, 701, 711, 924
Eam1104I CTCTTC 4 cut(s) 650, 765, 779, 784
EarI CTCTTC 4 cut(s) 650, 765, 779, 784
EcoT22I ATGCAT 1 cut(s) 567
FaqI GGGAC 2 cut(s) 433, 917
FbaI TGATCA 3 cut(s) 97, 199, 528
Fnu4HI GCNGC 4 cut(s) 108, 294, 297, 435
FokI GGATG 2 cut(s) 23, 820
Fsp4HI GCNGC 4 cut(s) 108, 294, 297, 435
FspBI CTAG 1 cut(s) 621
GluI GCNGC 4 cut(s) 108, 294, 297, 435
HapII CCGG 3 cut(s) 556, 680, 906
HinfI GANTC 2 cut(s) 543, 578
HpaII CCGG 3 cut(s) 556, 680, 906
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 3 cut(s) 506, 577, 583
Hpy188III TCNNGA 8 cut(s) 17, 26, 95, 215, 250, 283, 621, 664
Hpy8I GTNNAC 1 cut(s) 675
HpyAV CCTTC 2 cut(s) 416, 682
HpyCH4V TGCA 5 cut(s) 11, 293, 387, 565, 811
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 384, 440
HpyF3I CTNAG 4 cut(s) 379, 701, 711, 924
Ksp22I TGATCA 3 cut(s) 97, 199, 528
LmnI GCTCC 2 cut(s) 124, 362
LpnPI CCDG 7 cut(s) 382, 569, 649, 650, 662, 693, 919
Lsp1109I GCAGC 4 cut(s) 94, 305, 308, 446
LweI GCATC 3 cut(s) 626, 687, 798
MaeI CTAG 1 cut(s) 621
MaeIII GTNAC 4 cut(s) 77, 168, 233, 607
MfeI CAATTG 1 cut(s) 388
MflI RGATCY 2 cut(s) 217, 822
MluCI AATT 4 cut(s) 6, 112, 193, 388
MlyI GAGTC 2 cut(s) 552, 587
MmeI TCCRAC 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 567
MroXI GAANNNNTTC 1 cut(s) 659
MseI TTAA 3 cut(s) 44, 798, 849
MslI CAYNNNNRTG 3 cut(s) 93, 177, 443
MspCI CTTAAG 1 cut(s) 797
MspI CCGG 3 cut(s) 556, 680, 906
MunI CAATTG 1 cut(s) 388
MwoI GCNNNNNNNGC 3 cut(s) 116, 384, 440
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 567
NspI RCATGY 1 cut(s) 565
PagI TCATGA 2 cut(s) 25, 94
PcsI WCGNNNNNNNCGW 1 cut(s) 861
PdmI GAANNNNTTC 1 cut(s) 659
PinAI ACCGGT 1 cut(s) 555
PkrI GCNGC 4 cut(s) 109, 295, 298, 436
PleI GAGTC 2 cut(s) 551, 586
PpsI GAGTC 2 cut(s) 551, 586
PspN4I GGNNCC 1 cut(s) 358
PsuI RGATCY 2 cut(s) 217, 822
RsaI GTAC 2 cut(s) 269, 560
RsaNI GTAC 2 cut(s) 268, 559
RseI CAYNNNNRTG 3 cut(s) 93, 177, 443
SaqAI TTAA 3 cut(s) 44, 798, 849
SatI GCNGC 4 cut(s) 108, 294, 297, 435
SchI GAGTC 2 cut(s) 552, 587
SetI ASST 9 cut(s) 160, 301, 385, 514, 639, 662, 764, 804, 855
SfaNI GCATC 3 cut(s) 626, 687, 798
SmiMI CAYNNNNRTG 3 cut(s) 93, 177, 443
SmlI CTYRAG 2 cut(s) 281, 797
SmoI CTYRAG 2 cut(s) 281, 797
Sse9I AATT 4 cut(s) 6, 112, 193, 388
SsiI CCGC 2 cut(s) 441, 615
SspMI CTAG 1 cut(s) 621
TaqI TCGA 1 cut(s) 855
TasI AATT 4 cut(s) 6, 112, 193, 388
TatI WGTACW 1 cut(s) 267
Tru1I TTAA 3 cut(s) 44, 798, 849
Tru9I TTAA 3 cut(s) 44, 798, 849
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 4 cut(s) 107, 293, 296, 434
Tsp45I GTSAC 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 797
XbaI TCTAGA 1 cut(s) 620
XceI RCATGY 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 1 cut(s) 621
Zsp2I ATGCAT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.