Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009785.1

Orthogroup ID

OG0013026

Physical Location & Seq

Genomic Coordinates Reverse (-)

60438 .. 61616

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009785.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggaactttcaagtcatcaagaagggcagatcccaatctcaatcccaatccctatcccaatcccaataaattcttcttatggtgctggtggacatgggcatggacacggacacatgatccatcatcatcatcatcacccacctgcagcgccccacacccacaccctcacccacaacaaccacctcattacctcttcagcagcggcagtagtagcaccaccaccaccaccaccacaaaatcaaatccctgcctccattaacaataatgggtcctccattcccaaaaccgctagcctagatcaggaggaggaggaggaggaggaggaggatgaggagcatgtcaatcatgtcaatgtggcttacaacaacaacaacaacaacaacaacagcggcagcaacaataacaagaaagtggtgaacagcagcatcaagtacaaagagtgcctgaagaaccatgcagcagccatgggagggactgcaactgatgggtgtggtgagttcatgcccagtggagaagaaggcaccattgaagctctcacctgctctgcctgcaactgccacagaaacttccacagaaaagaaattgaaggtgatcatggcatgtcctcatgggatctcaacagcaacactcgggttggtactggtgggaggaaagtcctattaggccatcccaatgggcacaagaacataagtatactagcccctgatgccttgggtttccacacagctgctaatcccacaggaggcttcttaccctcaagaactgcaccacatcatcctcaccaccacccccacccccaccatatgataatgtcgtacaataacaacatggccattggtgggttgatggggtcccagcttccttcagaatctgatgagcaagaacaagatcaaattcatcatcatggccatggtggtggggttaatgtggccagcagggcaccagtacagcttgtgaagaaaaggttcaggacaaagtttactcaggaacagaaggagaaaatgttcaactttgcagagaaagttgggtggaagattcagaagcaagaggagtctgttgtacaaaacttctgccatgagattggtgtcaagagaagagttctcaaggtttggatgcacaacaataaacacaatctggctaagaataagtcccaaccctcacctagtactgctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

392

Amino Acids

42.84

Weight (kDa)

6.88

Isoelectric Point (pI)

58.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca	FvH4_5g27650
malus_domestica	MD15G1443500.v1.1
prunus_persica	Prupe.1G586000_v2.0.a1
pyrus_communis	pycom08g21540
rosa_chinensis	RchiOBHm_Chr7g0219261
rosa_laevigata	RLG00000002301
rosa_multiflora	Rmu_sc0009785.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240110
rosa_rugosa	Rorug07G0183000
rosa_samantha	Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana	Rw7G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	151, 548
Acc36I	ACCTGC	2 cut(s)	151, 548
AccB1I	GGYRCC	2 cut(s)	521, 940
AccI	GTMKAC	1 cut(s)	694
AciI	CCGC	3 cut(s)	203, 288, 390
AclWI	GGATC	3 cut(s)	25, 112, 621
AcoI	YGGCCR	3 cut(s)	831, 907, 930
AcsI	RAATTY	2 cut(s)	70, 894
AcuI	CTGAAG	3 cut(s)	180, 467, 849
AfaI	GTAC	6 cut(s)	434, 640, 818, 948, 1062, 1168
AfiI	CCNNNNNNNGG	4 cut(s)	301, 471, 743, 840
AgsI	TTSAA	4 cut(s)	12, 530, 587, 1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AloI	GAACNNNNNNTCC	2 cut(s)	989, 1021
AluBI	AGCT	4 cut(s)	533, 728, 859, 952
AluI	AGCT	4 cut(s)	533, 728, 859, 952
AlwI	GGATC	3 cut(s)	25, 112, 621
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	4 cut(s)	664, 831, 907, 930
ApeKI	GCWGC	8 cut(s)	146, 200, 393, 423, 458, 461, 728, 1172
ApoI	RAATTY	2 cut(s)	70, 894
Asp700I	GAANNNNTTC	2 cut(s)	965, 1004
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	270, 852
AsuHPI	GGTGA	8 cut(s)	128, 160, 427, 506, 529, 602, 773, 1152
AsuNHI	GCTAGC	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	2 cut(s)	270, 852
BaeGI	GKGCMC	2 cut(s)	681, 943
BalI	TGGCCA	3 cut(s)	833, 909, 932
BanI	GGYRCC	2 cut(s)	521, 940
BbvI	GCAGC	8 cut(s)	158, 212, 405, 435, 470, 473, 715, 1159
BccI	CCATC	4 cut(s)	129, 479, 675, 841
BclI	TGATCA	1 cut(s)	592
BfaI	CTAG	4 cut(s)	291, 296, 698, 1164
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	2 cut(s)	151, 548
BglI	GCCNNNNNGGC	1 cut(s)	938
BmcAI	AGTACT	1 cut(s)	1168
Bme18I	GGWCC	2 cut(s)	270, 852
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	2 cut(s)	270, 852
BmiI	GGNNCC	5 cut(s)	271, 523, 853, 854, 942
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	3 cut(s)	435, 697, 1104
BmtI	GCTAGC	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	501
BpuEI	CTTGAG	2 cut(s)	742, 1088
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	465, 711, 910
BsaXI	ACNNNNNCTCC	2 cut(s)	989, 1019
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 471, 743, 840
Bse1I	ACTGG	3 cut(s)	507, 646, 944
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	465, 711, 910
BseGI	GGATG	4 cut(s)	334, 667, 775, 1119
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	4 cut(s)	301, 471, 743, 840
BseMII	CTCAG	1 cut(s)	998
BseNI	ACTGG	3 cut(s)	507, 646, 944
BseRI	GAGGAG	9 cut(s)	320, 323, 326, 329, 332, 335, 338, 347, 1064
BseSI	GKGCMC	2 cut(s)	681, 943
BseXI	GCAGC	8 cut(s)	158, 212, 405, 435, 470, 473, 715, 1159
BseYI	CCCAGC	1 cut(s)	855
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	4 cut(s)	666, 833, 909, 932
BshNI	GGYRCC	2 cut(s)	521, 940
BsiHKCI	CYCGRG	1 cut(s)	630
BslFI	GGGAC	3 cut(s)	487, 838, 1135
BslI	CCNNNNNNNGG	4 cut(s)	301, 471, 743, 840
BsmFI	GGGAC	3 cut(s)	487, 838, 1135
BsnI	GGCC	4 cut(s)	666, 833, 909, 932
BsoBI	CYCGRG	1 cut(s)	630
Bsp1286I	GDGCHC	2 cut(s)	681, 943
Bsp1407I	TGTACA	1 cut(s)	1060
Bsp143I	GATC	6 cut(s)	30, 117, 298, 592, 613, 889
Bsp19I	CCATGG	2 cut(s)	465, 910
BspACI	CCGC	3 cut(s)	203, 288, 390
BspANI	GGCC	4 cut(s)	666, 833, 909, 932
BspCNI	CTCAG	1 cut(s)	997
BspLI	GGNNCC	5 cut(s)	271, 523, 853, 854, 942
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	2 cut(s)	151, 548
BspOI	GCTAGC	1 cut(s)	294
BspPI	GGATC	3 cut(s)	25, 112, 621
BspT107I	GGYRCC	2 cut(s)	521, 940
BsrGI	TGTACA	1 cut(s)	1060
BsrI	ACTGG	3 cut(s)	507, 646, 944
BssECI	CCNNGG	3 cut(s)	465, 711, 910
BssMI	GATC	6 cut(s)	30, 117, 298, 592, 613, 889
BssNAI	GTATAC	1 cut(s)	695
BssT1I	CCWWGG	3 cut(s)	465, 711, 910
Bst1107I	GTATAC	1 cut(s)	695
Bst6I	CTCTTC	2 cut(s)	199, 1090
BstAUI	TGTACA	1 cut(s)	1060
BstC8I	GCNNGC	3 cut(s)	292, 550, 934
BstDEI	CTNAG	3 cut(s)	984, 1140, 1176
BstDSI	CCRYGG	2 cut(s)	465, 910
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	4 cut(s)	334, 667, 775, 1119
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	6 cut(s)	33, 120, 301, 595, 616, 892
BstMBI	GATC	6 cut(s)	30, 117, 298, 592, 613, 889
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 549, 707, 938
BstNSI	RCATGY	2 cut(s)	341, 604
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	2 cut(s)	681, 943
BstV1I	GCAGC	8 cut(s)	158, 212, 405, 435, 470, 473, 715, 1159
BstX2I	RGATCY	2 cut(s)	30, 613
BstXI	CCANNNNNNTGG	3 cut(s)	674, 917, 1082
BstYI	RGATCY	2 cut(s)	30, 613
BstZ17I	GTATAC	1 cut(s)	695
BsuRI	GGCC	4 cut(s)	666, 833, 909, 932
BtgI	CCRYGG	2 cut(s)	465, 910
BtsCI	GGATG	4 cut(s)	334, 667, 775, 1119
BtsIMutI	CAGTG	1 cut(s)	514
BveI	ACCTGC	2 cut(s)	151, 548
Cac8I	GCNNGC	3 cut(s)	292, 550, 934
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	270, 852
Csp6I	GTAC	6 cut(s)	433, 639, 817, 947, 1061, 1167
CviQI	GTAC	6 cut(s)	433, 639, 817, 947, 1061, 1167
DdeI	CTNAG	3 cut(s)	984, 1140, 1176
DpnI	GATC	6 cut(s)	32, 119, 300, 594, 615, 891
DpnII	GATC	6 cut(s)	30, 117, 298, 592, 613, 889
EaeI	YGGCCR	3 cut(s)	831, 907, 930
Eam1104I	CTCTTC	2 cut(s)	199, 1090
EarI	CTCTTC	2 cut(s)	199, 1090
Eco130I	CCWWGG	3 cut(s)	465, 711, 910
Eco47I	GGWCC	2 cut(s)	270, 852
Eco57I	CTGAAG	3 cut(s)	180, 467, 849
Eco88I	CYCGRG	1 cut(s)	630
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoO109I	RGGNCCY	2 cut(s)	270, 852
EcoT14I	CCWWGG	3 cut(s)	465, 711, 910
ErhI	CCWWGG	3 cut(s)	465, 711, 910
FaqI	GGGAC	3 cut(s)	487, 838, 1135
FauNDI	CATATG	1 cut(s)	804
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	694
FokI	GGATG	4 cut(s)	341, 654, 762, 1126
FspBI	CTAG	4 cut(s)	291, 296, 698, 1164
GlaI	GCGC	1 cut(s)	150
GsaI	CCCAGC	1 cut(s)	859
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	666, 833, 909, 932
HhaI	GCGC	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	869, 1036, 1052
HphI	GGTGA	8 cut(s)	128, 160, 427, 506, 529, 602, 773, 1152
Hpy166II	GTNNAC	4 cut(s)	92, 418, 695, 981
Hpy188I	TCNGA	3 cut(s)	868, 874, 1041
Hpy188III	TCNNGA	6 cut(s)	20, 302, 759, 970, 986, 1090
Hpy8I	GTNNAC	4 cut(s)	92, 418, 695, 981
HpyAV	CCTTC	5 cut(s)	17, 512, 581, 873, 988
HpyCH4V	TGCA	7 cut(s)	146, 458, 479, 552, 767, 1016, 1117
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 549, 707, 938
HpyF3I	CTNAG	3 cut(s)	984, 1140, 1176
HspAI	GCGC	1 cut(s)	149
KflI	GGGWCCC	1 cut(s)	852
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	6 cut(s)	30, 117, 298, 592, 613, 889
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	8 cut(s)	158, 212, 405, 435, 470, 473, 715, 1159
LweI	GCATC	3 cut(s)	435, 697, 1104
MaeI	CTAG	4 cut(s)	291, 296, 698, 1164
MalI	GATC	6 cut(s)	32, 119, 300, 594, 615, 891
MboI	GATC	6 cut(s)	30, 117, 298, 592, 613, 889
MboII	GAAGA	7 cut(s)	66, 186, 460, 527, 970, 1045, 1107
MflI	RGATCY	2 cut(s)	30, 613
MhlI	GDGCHC	2 cut(s)	681, 943
MlsI	TGGCCA	3 cut(s)	833, 909, 932
MluCI	AATT	3 cut(s)	70, 582, 894
MluNI	TGGCCA	3 cut(s)	833, 909, 932
MlyI	GAGTC	1 cut(s)	1061
Mox20I	TGGCCA	3 cut(s)	833, 909, 932
MroXI	GAANNNNTTC	2 cut(s)	965, 1004
MscI	TGGCCA	3 cut(s)	833, 909, 932
MseI	TTAA	2 cut(s)	258, 924
MslI	CAYNNNNRTG	6 cut(s)	99, 351, 672, 903, 909, 915
Msp20I	TGGCCA	3 cut(s)	833, 909, 932
MspA1I	CMGCKG	3 cut(s)	203, 390, 728
MwoI	GCNNNNNNNGC	4 cut(s)	212, 549, 707, 938
NcoI	CCATGG	2 cut(s)	465, 910
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	6 cut(s)	30, 117, 298, 592, 613, 889
NheI	GCTAGC	1 cut(s)	290
NlaIV	GGNNCC	5 cut(s)	271, 523, 853, 854, 942
NspI	RCATGY	2 cut(s)	341, 604
PaqCI	CACCTGC	2 cut(s)	151, 548
PdmI	GAANNNNTTC	2 cut(s)	965, 1004
PfeI	GAWTC	2 cut(s)	869, 1036
PleI	GAGTC	1 cut(s)	1060
PpsI	GAGTC	1 cut(s)	1060
PpuMI	RGGWCCY	2 cut(s)	270, 852
Psp5II	RGGWCCY	2 cut(s)	270, 852
PspFI	CCCAGC	1 cut(s)	855
PspN4I	GGNNCC	5 cut(s)	271, 523, 853, 854, 942
PspPI	GGNCC	2 cut(s)	270, 852
PspPPI	RGGWCCY	2 cut(s)	270, 852
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	2 cut(s)	30, 613
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	6 cut(s)	434, 640, 818, 948, 1062, 1168
RsaNI	GTAC	6 cut(s)	433, 639, 817, 947, 1061, 1167
RseI	CAYNNNNRTG	6 cut(s)	99, 351, 672, 903, 909, 915
SaqAI	TTAA	2 cut(s)	258, 924
Sau3AI	GATC	6 cut(s)	30, 117, 298, 592, 613, 889
Sau96I	GGNCC	2 cut(s)	270, 852
ScaI	AGTACT	1 cut(s)	1168
SchI	GAGTC	1 cut(s)	1061
SduI	GDGCHC	2 cut(s)	681, 943
SfaNI	GCATC	3 cut(s)	435, 697, 1104
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	2 cut(s)	270, 852
SmiMI	CAYNNNNRTG	6 cut(s)	99, 351, 672, 903, 909, 915
SmlI	CTYRAG	2 cut(s)	757, 1103
SmoI	CTYRAG	2 cut(s)	757, 1103
Sse9I	AATT	3 cut(s)	70, 582, 894
SsiI	CCGC	3 cut(s)	203, 288, 390
SspMI	CTAG	4 cut(s)	291, 296, 698, 1164
StyI	CCWWGG	3 cut(s)	465, 711, 910
TasI	AATT	3 cut(s)	70, 582, 894
TatI	WGTACW	4 cut(s)	432, 946, 1060, 1166
TauI	GCSGC	2 cut(s)	206, 393
TfiI	GAWTC	2 cut(s)	869, 1036
Tru1I	TTAA	2 cut(s)	258, 924
Tru9I	TTAA	2 cut(s)	258, 924
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	8 cut(s)	146, 200, 393, 423, 458, 461, 728, 1172
TspDTI	ATGAA	2 cut(s)	490, 887
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	270, 852
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	2 cut(s)	70, 894
XceI	RCATGY	2 cut(s)	341, 604
XmiI	GTMKAC	1 cut(s)	694
XmnI	GAANNNNTTC	2 cut(s)	965, 1004
XspI	CTAG	4 cut(s)	291, 296, 698, 1164
ZrmI	AGTACT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.