Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013026

Physical Location & Seq

Genomic Coordinates Reverse (-)

47574694 .. 47577403

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G586000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAACTTTCAAGTCAAGAAGCTGGGGAGATCCCAATCCCAATAAATAGTTCCTATGGTGGTGGGCATGGGCATGGGCACATGATCCATCATAATCATCATCATCATGACCCTGCAGCAGCAGCAACAGTAGTGCCCCACAACCATTCCAATTTGATTCCCTCCTCAGCAGTGCCCCAAAATCAAAACCCCTCCAACACTAATGGCTCTTCCATGCCCACAAGCCTAGATCATCATCACCATCACCCCCATTCTCATCCTCATCATGAGGAGGAGGAGCATGTGAACATTGTGCCCTACAGCTGTAAGAAAGTGGGGGTGAGGTACAAAGAGTGTCTCAAGAACCATGCAGCAGCCATGGGAGGGACTGCAACTGATGGGTGTGGTGAATTCATGCCCAGTGGAGAAGAAGGCACCATTGAAGCTCTCAACTGCTCAGCCTGCAACTGTCACAGAAACTTCCACAGAAAAGAAGTAGAAGGTGAGCAGCAGCCCTTCCCCTCCTCTTGGGATCATAACTTTCATCATACTATCAACAGGGTTGGGGTTGGAAGCAGGAAGTTCCTATTAGGCCCTGGCCATCACAAGAATTTAATAGCAGCCCCCCAAGAGGGTTTAGGGTACCATACAATGCCCTCATCAAGAGCAGCAGCACCCCACCAGATGATAATGTCTTACAACATGGGAATGGGAATGGGAATGGGAATGGGGATGGGGATGGGGGCCCTCCCTTCAGAGTCTGATGAACAGGAGGAGCATGATGGTGGTGGGGCTGTGGGCAGGCCAGCAGCAGCACAGCTAGCAAAGAAAAGGTTCAGGACCAAGTTTACACAGGAGCAGAAGGAAAAAATGTTCAACTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAAGAAGACTCTGTGGTACAAAACTTCTGCCAAGAGATTGGGGTCAAAAGAAGAGTTCTTAAGGTTTGGATGCACAACAATAAACACAATCTTGCCAAGAAGAATCCCCCACCACCCCCACCCCCACCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

342

Amino Acids

37.46

Weight (kDa)

7.24

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca	FvH4_5g27650
malus_domestica	MD15G1443500.v1.1
prunus_persica	Prupe.1G586000_v2.0.a1
pyrus_communis	pycom08g21540
rosa_chinensis	RchiOBHm_Chr7g0219261
rosa_laevigata	RLG00000002301
rosa_multiflora	Rmu_sc0009785.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240110
rosa_rugosa	Rorug07G0183000
rosa_samantha	Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana	Rw7G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	621
AccB1I	GGYRCC	2 cut(s)	413, 621
AclWI	GGATC	3 cut(s)	25, 79, 519
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	389, 589
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	3 cut(s)	326, 623, 909
AfiI	CCNNNNNNNGG	4 cut(s)	363, 507, 610, 611
AflII	CTTAAG	1 cut(s)	950
AgsI	TTSAA	3 cut(s)	12, 422, 856
AjnI	CCWGG	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	2 cut(s)	836, 868
AluBI	AGCT	4 cut(s)	23, 303, 425, 799
AluI	AGCT	4 cut(s)	23, 303, 425, 799
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	3 cut(s)	25, 79, 519
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	4 cut(s)	571, 577, 723, 782
ApaI	GGGCCC	1 cut(s)	727
ApoI	RAATTY	2 cut(s)	389, 589
Asp700I	GAANNNNTTC	1 cut(s)	812
Asp718I	GGTACC	1 cut(s)	621
AspS9I	GGNCC	4 cut(s)	572, 723, 724, 819
AsuHPI	GGTGA	5 cut(s)	230, 236, 331, 398, 494
AsuNHI	GCTAGC	1 cut(s)	799
AvaII	GGWCC	1 cut(s)	819
BaeGI	GKGCMC	5 cut(s)	81, 138, 177, 297, 727
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	2 cut(s)	413, 621
BanII	GRGCYC	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	903
BbvCI	CCTCAGC	1 cut(s)	166
BccI	CCATC	7 cut(s)	96, 249, 371, 588, 706, 712, 755
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	2 cut(s)	227, 800
BfmI	CTRYAG	2 cut(s)	114, 298
BfrI	CTTAAG	1 cut(s)	950
BlpI	GCTNAGC	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	819
BmgT120I	GGNCC	4 cut(s)	572, 723, 724, 819
BmiI	GGNNCC	4 cut(s)	415, 623, 724, 725
BmrFI	CCNGG	1 cut(s)	576
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	951
BmtI	GCTAGC	1 cut(s)	803
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	903
Bpu10I	CCTNAGC	1 cut(s)	166
Bpu1102I	GCTNAGC	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	323
BsaBI	GATNNNNATC	2 cut(s)	35, 234
BsaJI	CCNNGG	2 cut(s)	357, 574
Bsc4I	CCNNNNNNNGG	4 cut(s)	363, 507, 610, 611
Bse1I	ACTGG	1 cut(s)	399
Bse8I	GATNNNNATC	2 cut(s)	35, 234
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	357, 574
BseGI	GGATG	4 cut(s)	256, 717, 723, 966
BseJI	GATNNNNATC	2 cut(s)	35, 234
BseLI	CCNNNNNNNGG	4 cut(s)	363, 507, 610, 611
BseMII	CTCAG	2 cut(s)	180, 450
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	6 cut(s)	154, 284, 287, 290, 493, 767
BseSI	GKGCMC	5 cut(s)	81, 138, 177, 297, 727
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	4 cut(s)	573, 579, 725, 784
BshNI	GGYRCC	2 cut(s)	413, 621
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	4 cut(s)	363, 507, 610, 611
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	4 cut(s)	573, 579, 725, 784
Bsp120I	GGGCCC	1 cut(s)	723
Bsp1286I	GDGCHC	5 cut(s)	81, 138, 177, 297, 727
Bsp143I	GATC	4 cut(s)	30, 84, 229, 511
Bsp1720I	GCTNAGC	1 cut(s)	436
Bsp19I	CCATGG	1 cut(s)	357
BspANI	GGCC	4 cut(s)	573, 579, 725, 784
BspCNI	CTCAG	2 cut(s)	179, 449
BspHI	TCATGA	2 cut(s)	106, 265
BspLI	GGNNCC	4 cut(s)	415, 623, 724, 725
BspMAI	CTGCAG	1 cut(s)	118
BspOI	GCTAGC	1 cut(s)	803
BspPI	GGATC	3 cut(s)	25, 79, 519
BspQI	GCTCTTC	1 cut(s)	214
BspT107I	GGYRCC	2 cut(s)	413, 621
BspTI	CTTAAG	1 cut(s)	950
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	357, 574
BssMI	GATC	4 cut(s)	30, 84, 229, 511
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	2 cut(s)	130, 449
Bst6I	CTCTTC	2 cut(s)	214, 937
BstAFI	CTTAAG	1 cut(s)	950
BstC8I	GCNNGC	4 cut(s)	442, 782, 786, 801
BstDEI	CTNAG	2 cut(s)	166, 436
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	4 cut(s)	256, 717, 723, 966
BstKTI	GATC	4 cut(s)	33, 87, 232, 514
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	4 cut(s)	30, 84, 229, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 441, 800
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	2 cut(s)	114, 298
BstSLI	GKGCMC	5 cut(s)	81, 138, 177, 297, 727
BstV2I	GAAGAC	1 cut(s)	903
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	4 cut(s)	573, 579, 725, 784
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	4 cut(s)	256, 717, 723, 966
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	177, 406
Cac8I	GCNNGC	4 cut(s)	442, 782, 786, 801
CaiI	CAGNNNCTG	1 cut(s)	740
CciI	TCATGA	2 cut(s)	106, 265
Cfr13I	GGNCC	4 cut(s)	572, 723, 724, 819
Csp6I	GTAC	3 cut(s)	325, 622, 908
CviQI	GTAC	3 cut(s)	325, 622, 908
DdeI	CTNAG	2 cut(s)	166, 436
DpnI	GATC	4 cut(s)	32, 86, 231, 513
DpnII	GATC	4 cut(s)	30, 84, 229, 511
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	214, 937
EarI	CTCTTC	2 cut(s)	214, 937
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	819
Eco57I	CTGAAG	1 cut(s)	717
EcoO109I	RGGNCCY	3 cut(s)	572, 723, 724
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	357
FaqI	GGGAC	1 cut(s)	379
FokI	GGATG	4 cut(s)	243, 724, 730, 973
FriOI	GRGCYC	1 cut(s)	727
FspBI	CTAG	2 cut(s)	227, 800
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	4 cut(s)	573, 579, 725, 784
HinfI	GANTC	5 cut(s)	157, 737, 883, 899, 994
HphI	GGTGA	5 cut(s)	230, 236, 331, 398, 494
Hpy166II	GTNNAC	2 cut(s)	286, 828
Hpy188I	TCNGA	3 cut(s)	736, 742, 888
Hpy188III	TCNNGA	6 cut(s)	17, 107, 266, 340, 642, 817
Hpy8I	GTNNAC	2 cut(s)	286, 828
HpyAV	CCTTC	5 cut(s)	404, 473, 505, 741, 835
HpyCH4III	ACNGT	2 cut(s)	130, 449
HpyCH4V	TGCA	6 cut(s)	116, 350, 371, 444, 863, 964
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 441, 800
HpyF3I	CTNAG	2 cut(s)	166, 436
KpnI	GGTACC	1 cut(s)	625
Kzo9I	GATC	4 cut(s)	30, 84, 229, 511
LguI	GCTCTTC	1 cut(s)	214
LmnI	GCTCC	3 cut(s)	277, 754, 835
LweI	GCATC	1 cut(s)	951
MaeI	CTAG	2 cut(s)	227, 800
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	4 cut(s)	32, 86, 231, 513
MboI	GATC	4 cut(s)	30, 84, 229, 511
MboII	GAAGA	6 cut(s)	201, 419, 892, 908, 954, 1003
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	5 cut(s)	81, 138, 177, 297, 727
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	3 cut(s)	151, 389, 589
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	746, 893
MmeI	TCCRAC	2 cut(s)	219, 529
Mox20I	TGGCCA	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	3 cut(s)	593, 951, 1024
MslI	CAYNNNNRTG	4 cut(s)	72, 105, 686, 762
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	950
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	122, 441, 800
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	4 cut(s)	30, 84, 229, 511
NheI	GCTAGC	1 cut(s)	799
NlaIV	GGNNCC	4 cut(s)	415, 623, 724, 725
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	284
PagI	TCATGA	2 cut(s)	106, 265
PciSI	GCTCTTC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	3 cut(s)	157, 883, 994
PleI	GAGTC	2 cut(s)	745, 893
PpsI	GAGTC	2 cut(s)	745, 893
Psp6I	CCWGG	1 cut(s)	574
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	4 cut(s)	415, 623, 724, 725
PspOMI	GGGCCC	1 cut(s)	723
PspPI	GGNCC	4 cut(s)	572, 723, 724, 819
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	740
PsuI	RGATCY	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	303
RsaI	GTAC	3 cut(s)	326, 623, 909
RsaNI	GTAC	3 cut(s)	325, 622, 908
RseI	CAYNNNNRTG	4 cut(s)	72, 105, 686, 762
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	593, 951, 1024
Sau3AI	GATC	4 cut(s)	30, 84, 229, 511
Sau96I	GGNCC	4 cut(s)	572, 723, 724, 819
SchI	GAGTC	2 cut(s)	746, 893
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	5 cut(s)	81, 138, 177, 297, 727
SetI	ASST	9 cut(s)	25, 305, 326, 427, 484, 801, 815, 957, 1021
SfaNI	GCATC	1 cut(s)	951
SfcI	CTRYAG	2 cut(s)	114, 298
SinI	GGWCC	1 cut(s)	819
SmiMI	CAYNNNNRTG	4 cut(s)	72, 105, 686, 762
SmlI	CTYRAG	2 cut(s)	338, 950
SmoI	CTYRAG	2 cut(s)	338, 950
Sse9I	AATT	3 cut(s)	151, 389, 589
SspMI	CTAG	2 cut(s)	227, 800
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	130, 449
TasI	AATT	3 cut(s)	151, 389, 589
TfiI	GAWTC	3 cut(s)	157, 883, 994
Tru1I	TTAA	3 cut(s)	593, 951, 1024
Tru9I	TTAA	3 cut(s)	593, 951, 1024
TscAI	CASTG	2 cut(s)	177, 406
TseFI	GTSAC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	382, 512, 759
TspRI	CASTG	2 cut(s)	177, 406
Vha464I	CTTAAG	1 cut(s)	950
VpaK11BI	GGWCC	1 cut(s)	819
XapI	RAATTY	2 cut(s)	389, 589
XceI	RCATGY	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	2 cut(s)	227, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.