Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013026

Physical Location & Seq

Genomic Coordinates Forward (+)

683625 .. 685496

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGATTGCAAGTCAAGAAGATCCTATTCCAATAAACACTAGTTATGGTAATAGTGGAGGTGGGCATGGGAACATGAACCATCATCATCATGCCAATTCTGCACCATCATCTCTCAACATTACTACTTCAAACCCACTACTAGTCTCCTCAAATAGTAATGGTCTTGGTAAAAATCATGATCATTCTCATCATCATCATGTGGGTTACAACATCATGGTTACCAACATCAAGAAAGAGAAGCCTGTGGTGATAAAGTACAAGGAATGCCTAAAGAACCATGCAGCTACCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTATGCCAAGTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGCTCAGTTTGCAACTGCCATAGAAACTTTCATAGAAGAGAAACCGAAGGTGAAGAGAAAACATTCTTTTCCCCTTACCTCAACCACCACCAACCACCTCCGCAGCAGAGAAAACTCATGTTCCACCACAAGATGATCAAATCACCATTACCACAACAAATGATAATGCCTATTGGCGTTACAACCGCTGGATCCAACTCAGAGTCAGAGGATCTTATGGAGGAAGAAGGCGGAGGAAGCTTGACATTCCGGCAGCCACCACCACCACCATCACCGTATAGTTACGGACATAATCAGAAGAAAAGGTTTAGGACAAAGTTTACACAAGAGCAAAAGGAGAAGATGATTAGTTTTGCGGAAAGAGTTGGTTGGAAGATTCAGAGACAAGAGGAATCTGTTGTTCAACAGCTTTGTCAAGAGATTGGAATTAGGAGAAGAGTTCTTAAAGTTTGGATGCACAACAACAAACAAAATCTCTCCAAGAAGAGCAACAACGTTAGTAACAATGTCGACCTTTCTGCTGGTAATAACGACATTACTGAAAATCTTGCTTCTACTAATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

310

Amino Acids

34.72

Weight (kDa)

8.46

Isoelectric Point (pI)

63.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	85 - 137	4.1e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca	FvH4_5g27650
malus_domestica	MD15G1443500.v1.1
prunus_persica	Prupe.1G586000_v2.0.a1
pyrus_communis	pycom08g21540
rosa_chinensis	RchiOBHm_Chr7g0219261
rosa_laevigata	RLG00000002301
rosa_multiflora	Rmu_sc0009785.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240110
rosa_rugosa	Rorug07G0183000
rosa_samantha	Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana	Rw7G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	876
AciI	CCGC	4 cut(s)	467, 552, 597, 722
AclI	AACGTT	1 cut(s)	861
AclWI	GGATC	4 cut(s)	17, 552, 565, 585
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	132, 356, 770
AhlI	ACTAGT	2 cut(s)	41, 142
AluBI	AGCT	4 cut(s)	287, 359, 606, 775
AluI	AGCT	4 cut(s)	287, 359, 606, 775
Alw26I	GTCTC	2 cut(s)	151, 742
AlwI	GGATC	4 cut(s)	17, 552, 565, 585
ApeKI	GCWGC	3 cut(s)	284, 469, 619
Asp700I	GAANNNNTTC	1 cut(s)	428
AsuHPI	GGTGA	5 cut(s)	262, 350, 428, 501, 630
BamHI	GGATCC	1 cut(s)	557
BbvI	GCAGC	3 cut(s)	296, 481, 631
BccI	CCATC	4 cut(s)	90, 115, 305, 643
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BclI	TGATCA	2 cut(s)	181, 501
BcoDI	GTCTC	2 cut(s)	151, 742
BcuI	ACTAGT	2 cut(s)	41, 142
BfaI	CTAG	2 cut(s)	42, 143
BisI	GCNGC	3 cut(s)	285, 470, 620
BlsI	GCNGC	3 cut(s)	286, 471, 621
BmiI	GGNNCC	2 cut(s)	349, 559
BmsI	GCATC	1 cut(s)	810
BsaJI	CCNNGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	825
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	384, 579
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	296, 481, 631
BsgI	GTGCAG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	616
BsmAI	GTCTC	2 cut(s)	151, 742
BsmI	GAATGC	1 cut(s)	272
Bsp143I	GATC	5 cut(s)	22, 181, 501, 557, 577
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	4 cut(s)	467, 552, 597, 722
BspCNI	CTCAG	2 cut(s)	383, 578
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	349, 559
BspPI	GGATC	4 cut(s)	17, 552, 565, 585
BspQI	GCTCTTC	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	5 cut(s)	22, 181, 501, 557, 577
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	4 cut(s)	397, 414, 796, 845
BstDEI	CTNAG	3 cut(s)	370, 565, 930
BstDSI	CCRYGG	1 cut(s)	291
BstEII	GGTNACC	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	825
BstKTI	GATC	5 cut(s)	25, 184, 504, 560, 580
BstMAI	GTCTC	2 cut(s)	151, 742
BstMBI	GATC	5 cut(s)	22, 181, 501, 557, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 375, 603
BstPI	GGTNACC	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	296, 481, 631
BstX2I	RGATCY	3 cut(s)	22, 557, 577
BstYI	RGATCY	3 cut(s)	22, 557, 577
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	825
CciI	TCATGA	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	9 cut(s)	68, 76, 92, 179, 200, 217, 281, 292, 484
CviJI	RGCY	6 cut(s)	244, 287, 359, 606, 622, 775
CviKI_1	RGCY	6 cut(s)	244, 287, 359, 606, 622, 775
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	3 cut(s)	370, 565, 930
DpnI	GATC	5 cut(s)	24, 183, 503, 559, 579
DpnII	GATC	5 cut(s)	22, 181, 501, 557, 577
Eam1104I	CTCTTC	4 cut(s)	397, 414, 796, 845
EarI	CTCTTC	4 cut(s)	397, 414, 796, 845
EciI	GGCGGA	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	9 cut(s)	71, 79, 95, 182, 203, 220, 284, 295, 487
FatI	CATG	9 cut(s)	67, 75, 91, 178, 199, 216, 280, 291, 483
FbaI	TGATCA	2 cut(s)	181, 501
FblI	GTMKAC	1 cut(s)	876
Fnu4HI	GCNGC	3 cut(s)	285, 470, 620
FokI	GGATG	1 cut(s)	832
Fsp4HI	GCNGC	3 cut(s)	285, 470, 620
FspBI	CTAG	2 cut(s)	42, 143
GluI	GCNGC	3 cut(s)	285, 470, 620
HapII	CCGG	1 cut(s)	616
Hin1II	CATG	9 cut(s)	71, 79, 95, 182, 203, 220, 284, 295, 487
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HindIII	AAGCTT	1 cut(s)	604
HinfI	GANTC	3 cut(s)	569, 742, 758
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	5 cut(s)	262, 350, 428, 501, 630
Hpy166II	GTNNAC	2 cut(s)	687, 877
Hpy188I	TCNGA	4 cut(s)	568, 574, 663, 747
Hpy188III	TCNNGA	4 cut(s)	17, 179, 232, 782
Hpy8I	GTNNAC	2 cut(s)	687, 877
HpyAV	CCTTC	3 cut(s)	338, 407, 587
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	5 cut(s)	11, 104, 284, 378, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 375, 603
HpyF3I	CTNAG	3 cut(s)	370, 565, 930
HpySE526I	ACGT	1 cut(s)	861
Hsp92II	CATG	9 cut(s)	71, 79, 95, 182, 203, 220, 284, 295, 487
Ksp22I	TGATCA	2 cut(s)	181, 501
Kzo9I	GATC	5 cut(s)	22, 181, 501, 557, 577
LguI	GCTCTTC	1 cut(s)	845
LpnPI	CCDG	4 cut(s)	258, 540, 629, 873
Lsp1109I	GCAGC	3 cut(s)	296, 481, 631
LweI	GCATC	1 cut(s)	810
MaeI	CTAG	2 cut(s)	42, 143
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	5 cut(s)	206, 220, 544, 647, 866
MalI	GATC	5 cut(s)	24, 183, 503, 559, 579
MboI	GATC	5 cut(s)	22, 181, 501, 557, 577
MflI	RGATCY	3 cut(s)	22, 557, 577
MluCI	AATT	2 cut(s)	97, 792
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	2 cut(s)	585, 716
MnlI	CCTC	9 cut(s)	53, 160, 290, 455, 474, 568, 580, 593, 748
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	1 cut(s)	810
MslI	CAYNNNNRTG	2 cut(s)	90, 198
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	616
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	101, 375, 603
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	5 cut(s)	22, 181, 501, 557, 577
NlaIII	CATG	9 cut(s)	71, 79, 95, 182, 203, 220, 284, 295, 487
NlaIV	GGNNCC	2 cut(s)	349, 559
PagI	TCATGA	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	845
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	742, 758
PkrI	GCNGC	3 cut(s)	286, 471, 621
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Psp1406I	AACGTT	1 cut(s)	861
PspEI	GGTNACC	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	349, 559
PsuI	RGATCY	3 cut(s)	22, 557, 577
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	90, 198
SalI	GTCGAC	1 cut(s)	875
SapI	GCTCTTC	1 cut(s)	845
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	3 cut(s)	285, 470, 620
Sau3AI	GATC	5 cut(s)	22, 181, 501, 557, 577
SchI	GAGTC	1 cut(s)	578
SfaNI	GCATC	1 cut(s)	810
SmiMI	CAYNNNNRTG	2 cut(s)	90, 198
SpeI	ACTAGT	2 cut(s)	41, 142
Sse9I	AATT	2 cut(s)	97, 792
SsiI	CCGC	4 cut(s)	467, 552, 597, 722
SspMI	CTAG	2 cut(s)	42, 143
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	642
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	1 cut(s)	876
TasI	AATT	2 cut(s)	97, 792
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	742, 758
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TseI	GCWGC	3 cut(s)	284, 469, 619
TspDTI	ATGAA	2 cut(s)	92, 386
TspGWI	ACGGA	1 cut(s)	666
XmiI	GTMKAC	1 cut(s)	876
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	2 cut(s)	42, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.