MD15G1443500.v1.1

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013026
Physical Location & Seq
Reverse (-)
54366137 .. 54367267
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1443500.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGATCAACTTTCAAGTCAAGAAGGAGAGATCCCAATCACAATCCCAGTCCCGATCCCGATCCCAATAAATACTTCCTTTGGAAGTGGTGGGCATGGCCACCTGATCCATCATCATCAGCAGCAGCGCCCCCATGACCCTACAGCAGCAGCAACAGCAAGAGCAGCCGTGCCCCACAACAACAACAAAAACAACCATTCCAATTTCCTTCCCTCCTCAACAGTGGTGCCCCAAAATCAAACCCCCCACAACACTAACGGCTCTAATCCCATGCCCACAAGCCTGGATCATTCTCATGAGGAGGAGGAGGAGCAGGAGGAGGAGCATCATGATCATGTCAACAACGCAAATGCAAATGTTGTGCCCTACAAATACAACACTTATAATAATAAGAAACAAGCAGTTGTTGGGCACAATGGCGTGAGGTACAAGGAGTGCCTCAAGAACCATGCAGCAGCCATGGGAGGGACTGCCACGGATGGCTGTGGCGAATTCATGCCCAGTGGAGAAGAGGGCACCATTGAAGCCCTCAACTGCTCTGCCTGCAACTGCCACAGAAACTTCCACAGAAAAGAAGTTGAAGGTGAGCAGCAGCAGCTCTCCTCTTGTGATTATAATTTCCATCATACCATCAACAGGGCGGCTGGAGTTGGCAGCAGGAAATTCTTATTAAGCCATGAAGGAGGAGGAGGAGGACGTCACAAGAGTTTACTAGCACCACCCCAATACCCCCACCAGCACCAGATGATAATGTCTAACTACAACATGGGGATGGGGATGATTGAGATGGTTGGGTCCATTCCTTCAGATCAGTCTGATGAGCAGGAAGATCATCATCATCATCGTCATCATGGTGGCGGTGGTGGTGGGACAGTGGGCAGCAGGCCAGCAGTAGGACATGTAGCAAAGAAAAGGTTCAGGACAAAGTTTACACAGGAGCAGAAGGAGAAAATGTTAAACTTTGCAGAGAAAGTAGGGTGGAAGATTCAGAAGCAGGAAGACTCGTTTGTCCAAAACTTCTGCCAAGAGATTGGGGTCAAGAGAAGAGTTCTGAAGGTTTGGATGCACAACAACAAACACAACCTAGCCAACAAGATCAACCCACCACCACCTCCTCCACCTGCCCCTTAA

Protein Analysis

377

Amino Acids

41.65

Weight (kDa)

7.05

Isoelectric Point (pI)

62.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 141 - 193 3.2e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca FvH4_5g27650
malus_domestica MD15G1443500.v1.1
prunus_persica Prupe.1G586000_v2.0.a1
pyrus_communis pycom08g21540
rosa_chinensis RchiOBHm_Chr7g0219261
rosa_laevigata RLG00000002301
rosa_multiflora Rmu_sc0009785.1_g000021
rosa_roxburghii Rroxscaffold_3G00240110
rosa_rugosa Rorug07G0183000
rosa_samantha Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana Rw7G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 384, 615
AasI GACNNNNNNGTC 1 cut(s) 1007
AatII GACGTC 1 cut(s) 700
AccB1I GGYRCC 2 cut(s) 226, 515
AciI CCGC 2 cut(s) 641, 858
AclWI GGATC 6 cut(s) 12, 25, 49, 55, 100, 294
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 491, 662
AcuI CTGAAG 2 cut(s) 789, 1073
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 3 cut(s) 465, 636, 893
AflIII ACRYGT 1 cut(s) 898
AgsI TTSAA 3 cut(s) 15, 524, 581
AjnI CCWGG 1 cut(s) 282
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AluBI AGCT 1 cut(s) 598
AluI AGCT 1 cut(s) 598
AlwI GGATC 6 cut(s) 12, 25, 49, 55, 100, 294
AoxI GGCC 2 cut(s) 97, 884
ApoI RAATTY 2 cut(s) 491, 662
Asp700I GAANNNNTTC 1 cut(s) 914
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 1 cut(s) 596
AvaII GGWCC 1 cut(s) 795
BaeGI GKGCMC 5 cut(s) 174, 231, 366, 414, 518
BalI TGGCCA 1 cut(s) 99
BanI GGYRCC 2 cut(s) 226, 515
BbsI GAAGAC 1 cut(s) 1005
BccI CCATC 6 cut(s) 117, 473, 630, 638, 766, 781
BceAI ACGGC 2 cut(s) 152, 274
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 331
BfaI CTAG 2 cut(s) 713, 1085
BfmI CTRYAG 1 cut(s) 141
BfoI RGCGCY 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 3 cut(s) 228, 517, 796
BmrFI CCNGG 1 cut(s) 284
BmrI ACTGGG 2 cut(s) 41, 495
BmsI GCATC 2 cut(s) 334, 1053
BmuI ACTGGG 2 cut(s) 41, 495
BpiI GAAGAC 1 cut(s) 1005
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 425
BsaBI GATNNNNATC 3 cut(s) 35, 59, 834
BsaHI GRCGYC 1 cut(s) 697
BsaJI CCNNGG 2 cut(s) 459, 474
BsaXI ACNNNNNCTCC 2 cut(s) 938, 968
Bsc4I CCNNNNNNNGG 3 cut(s) 465, 636, 893
Bse1I ACTGG 2 cut(s) 47, 501
Bse8I GATNNNNATC 3 cut(s) 35, 59, 834
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 459, 474
BseGI GGATG 4 cut(s) 484, 777, 783, 1068
BseJI GATNNNNATC 3 cut(s) 35, 59, 834
BseLI CCNNNNNNNGG 3 cut(s) 465, 636, 893
BseNI ACTGG 2 cut(s) 47, 501
BseSI GKGCMC 5 cut(s) 174, 231, 366, 414, 518
BshFI GGCC 2 cut(s) 99, 886
BshNI GGYRCC 2 cut(s) 226, 515
BslFI GGGAC 3 cut(s) 35, 481, 883
BslI CCNNNNNNNGG 3 cut(s) 465, 636, 893
BsmFI GGGAC 3 cut(s) 35, 481, 883
BsnI GGCC 2 cut(s) 99, 886
Bsp1286I GDGCHC 5 cut(s) 174, 231, 366, 414, 518
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 2 cut(s) 641, 858
BspANI GGCC 2 cut(s) 99, 886
BspHI TCATGA 2 cut(s) 295, 328
BspLI GGNNCC 3 cut(s) 228, 517, 796
BspPI GGATC 6 cut(s) 12, 25, 49, 55, 100, 294
BspT107I GGYRCC 2 cut(s) 226, 515
BsrI ACTGG 2 cut(s) 47, 501
BssECI CCNNGG 2 cut(s) 459, 474
BssNI GRCGYC 1 cut(s) 697
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 223, 874
Bst6I CTCTTC 2 cut(s) 504, 1039
BstACI GRCGYC 1 cut(s) 697
BstC8I GCNNGC 3 cut(s) 544, 884, 888
BstDSI CCRYGG 2 cut(s) 459, 474
BstF5I GGATG 4 cut(s) 484, 777, 783, 1068
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstMWI GCNNNNNNNGC 4 cut(s) 155, 164, 543, 595
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 5 cut(s) 174, 231, 366, 414, 518
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 2 cut(s) 283, 1031
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 2 cut(s) 99, 886
BtgI CCRYGG 2 cut(s) 459, 474
BtsCI GGATG 4 cut(s) 484, 777, 783, 1068
BtsIMutI CAGTG 3 cut(s) 228, 508, 879
Cac8I GCNNGC 3 cut(s) 544, 884, 888
CciI TCATGA 2 cut(s) 295, 328
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 795
Csp6I GTAC 1 cut(s) 427
CviQI GTAC 1 cut(s) 427
DrdI GACNNNNNNGTC 1 cut(s) 1007
DseDI GACNNNNNNGTC 1 cut(s) 1007
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 504, 1039
EarI CTCTTC 2 cut(s) 504, 1039
Eco130I CCWWGG 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 795
Eco57I CTGAAG 2 cut(s) 789, 1073
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
FaqI GGGAC 3 cut(s) 35, 481, 883
FbaI TGATCA 1 cut(s) 331
FokI GGATG 4 cut(s) 491, 784, 790, 1075
FspBI CTAG 2 cut(s) 713, 1085
GlaI GCGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 666
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 2 cut(s) 99, 886
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 697
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 2 cut(s) 985, 1001
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 3 cut(s) 340, 710, 930
Hpy188I TCNGA 4 cut(s) 808, 817, 990, 1053
Hpy188III TCNNGA 8 cut(s) 20, 52, 58, 296, 329, 442, 919, 1039
Hpy8I GTNNAC 3 cut(s) 340, 710, 930
HpyAV CCTTC 7 cut(s) 17, 218, 575, 674, 813, 937, 1048
HpyCH4III ACNGT 2 cut(s) 223, 874
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 5 cut(s) 353, 452, 546, 965, 1066
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 164, 543, 595
HpySE526I ACGT 1 cut(s) 697
Hsp92I GRCGYC 1 cut(s) 697
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 331
LmnI GCTCC 3 cut(s) 310, 322, 937
LweI GCATC 2 cut(s) 334, 1053
MaeI CTAG 2 cut(s) 713, 1085
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 1 cut(s) 698
MboII GAAGA 5 cut(s) 521, 839, 994, 1010, 1056
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 5 cut(s) 174, 231, 366, 414, 518
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 4 cut(s) 202, 491, 616, 662
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 995
Mox20I TGGCCA 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 914
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 671, 956, 1129
MslI CAYNNNNRTG 4 cut(s) 294, 333, 770, 852
Msp20I TGGCCA 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 4 cut(s) 155, 164, 543, 595
NcoI CCATGG 1 cut(s) 459
NlaIV GGNNCC 3 cut(s) 228, 517, 796
NmuCI GTSAC 1 cut(s) 698
NspI RCATGY 1 cut(s) 902
PagI TCATGA 2 cut(s) 295, 328
PciI ACATGT 1 cut(s) 898
PdmI GAANNNNTTC 1 cut(s) 914
PfeI GAWTC 1 cut(s) 985
PleI GAGTC 1 cut(s) 995
PpsI GAGTC 1 cut(s) 995
PscI ACATGT 1 cut(s) 898
PsiI TTATAA 2 cut(s) 384, 615
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 3 cut(s) 228, 517, 796
PspPI GGNCC 1 cut(s) 795
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 4 cut(s) 294, 333, 770, 852
SaqAI TTAA 3 cut(s) 671, 956, 1129
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 1 cut(s) 995
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 5 cut(s) 174, 231, 366, 414, 518
SfaNI GCATC 2 cut(s) 334, 1053
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 4 cut(s) 294, 333, 770, 852
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 202, 491, 616, 662
SsiI CCGC 2 cut(s) 641, 858
SspMI CTAG 2 cut(s) 713, 1085
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 2 cut(s) 223, 874
TaiI ACGT 1 cut(s) 700
TasI AATT 4 cut(s) 202, 491, 616, 662
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 1 cut(s) 985
Tru1I TTAA 3 cut(s) 671, 956, 1129
Tru9I TTAA 3 cut(s) 671, 956, 1129
TscAI CASTG 3 cut(s) 228, 508, 879
TseFI GTSAC 1 cut(s) 698
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 2 cut(s) 484, 693
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 3 cut(s) 228, 508, 879
VpaK11BI GGWCC 1 cut(s) 795
XapI RAATTY 2 cut(s) 491, 662
XceI RCATGY 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 914
XspI CTAG 2 cut(s) 713, 1085
ZraI GACGTC 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.