Rh7BG316600

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013026
Physical Location & Seq
Forward (+)
30644315 .. 30645215
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG316600.1

Sequence Viewer

Length: 723 bp
ATGGGAGGGACTGCAACTGATGGGTGTGGTGAGTTCATGCCCAGTGGAGAAGAAGGCACCATTGAAGCTCTCACCTGCTCTGCCTGCAACTGCCACAGAAACTTCCACAGAAAAGAAATTGAAGGCGATCATGGCATGTCCTCATGGGATCTCAACAGCAACACTCGAGTTGGAACTGGTGGGAGGAAAGTCCTATTAGGCCATCCCAATGGGCACAAGAACATGAGTATACTAGCCCCTGATGCCTTGGGTTTCCACACAGCTGCTAATCCCACAGGAGGCTTCTTACCCTCAAGAACTGCACCACATCATCCTCACCACCACCCCCACCAGATGATAATGTCTTACAATAACATGGCCATTGGTGGGTTGATGGGGTCCCAGCTCCCTTCAGAATCTGATGAGCAAGAACAAGATCAAATTCATCATCATGGCCATGGTGGTGGGGTTAATGTGGCCAGCAGGGCACCAGTACAGCTTGTGAAGAAAAGGTTCAGGACAAAGTTTACTCAGGAACAGAAGGAGAAAATGTTCAACTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAAGAGGAGTCTGTTGTACAAAACTTCTGCCATGAGATTGGTGTCAAGAGAAGAGTTCTCAAGGTTTGGATGCACAACAATAAACACAATCTGGCTAAGAATAAGTCCCAACCCCCACCTATTATATCAAATAACATGGGTTATGCAATGTAG

Protein Analysis

240

Amino Acids

26.59

Weight (kDa)

8.98

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 1 - 40 1.6e-20 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca FvH4_5g27650
malus_domestica MD15G1443500.v1.1
prunus_persica Prupe.1G586000_v2.0.a1
pyrus_communis pycom08g21540
rosa_chinensis RchiOBHm_Chr7g0219261
rosa_laevigata RLG00000002301
rosa_multiflora Rmu_sc0009785.1_g000021
rosa_roxburghii Rroxscaffold_3G00240110
rosa_rugosa Rorug07G0183000
rosa_samantha Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana Rw7G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 2 cut(s) 56, 466
AccI GTMKAC 1 cut(s) 229
AclWI GGATC 1 cut(s) 156
AcoI YGGCCR 3 cut(s) 357, 433, 456
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 2 cut(s) 474, 588
AfiI CCNNNNNNNGG 2 cut(s) 278, 366
AgsI TTSAA 3 cut(s) 65, 122, 535
AloI GAACNNNNNNTCC 2 cut(s) 515, 547
AluBI AGCT 4 cut(s) 68, 263, 385, 478
AluI AGCT 4 cut(s) 68, 263, 385, 478
AlwI GGATC 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 4 cut(s) 199, 357, 433, 456
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 420
Asp700I GAANNNNTTC 2 cut(s) 491, 530
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 3 cut(s) 41, 64, 308
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 378
BaeGI GKGCMC 2 cut(s) 216, 469
BalI TGGCCA 3 cut(s) 359, 435, 458
BanI GGYRCC 2 cut(s) 56, 466
BbvI GCAGC 1 cut(s) 250
BccI CCATC 3 cut(s) 14, 210, 367
BfaI CTAG 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 83
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 378
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 4 cut(s) 58, 379, 380, 468
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 232, 630
BmuI ACTGGG 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 277, 614
BsaJI CCNNGG 2 cut(s) 246, 436
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 366
Bse1I ACTGG 3 cut(s) 42, 181, 470
Bse3DI GCAATG 1 cut(s) 723
BseDI CCNNGG 2 cut(s) 246, 436
BseGI GGATG 3 cut(s) 202, 310, 645
BseLI CCNNNNNNNGG 2 cut(s) 278, 366
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 3 cut(s) 42, 181, 470
BseRI GAGGAG 1 cut(s) 590
BseSI GKGCMC 2 cut(s) 216, 469
BseXI GCAGC 1 cut(s) 250
BseYI CCCAGC 1 cut(s) 381
BsgI GTGCAG 1 cut(s) 285
BshFI GGCC 4 cut(s) 201, 359, 435, 458
BshNI GGYRCC 2 cut(s) 56, 466
BsiHKCI CYCGRG 1 cut(s) 165
BslFI GGGAC 3 cut(s) 22, 364, 661
BslI CCNNNNNNNGG 2 cut(s) 278, 366
BsmFI GGGAC 3 cut(s) 22, 364, 661
BsnI GGCC 4 cut(s) 201, 359, 435, 458
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 216, 469
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 3 cut(s) 127, 148, 415
Bsp19I CCATGG 1 cut(s) 436
BspANI GGCC 4 cut(s) 201, 359, 435, 458
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 4 cut(s) 58, 379, 380, 468
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 1 cut(s) 156
BspT107I GGYRCC 2 cut(s) 56, 466
BsrDI GCAATG 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 586
BsrI ACTGG 3 cut(s) 42, 181, 470
BssECI CCNNGG 2 cut(s) 246, 436
BssMI GATC 3 cut(s) 127, 148, 415
BssNAI GTATAC 1 cut(s) 230
BssT1I CCWWGG 2 cut(s) 246, 436
Bst1107I GTATAC 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 616
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 2 cut(s) 85, 460
BstDEI CTNAG 2 cut(s) 510, 666
BstDSI CCRYGG 1 cut(s) 436
BstF5I GGATG 3 cut(s) 202, 310, 645
BstKTI GATC 3 cut(s) 130, 151, 418
BstMBI GATC 3 cut(s) 127, 148, 415
BstMWI GCNNNNNNNGC 4 cut(s) 84, 132, 242, 464
BstNSI RCATGY 1 cut(s) 139
BstSLI GKGCMC 2 cut(s) 216, 469
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 148
BstXI CCANNNNNNTGG 3 cut(s) 209, 443, 608
BstYI RGATCY 1 cut(s) 148
BstZ17I GTATAC 1 cut(s) 230
BsuRI GGCC 4 cut(s) 201, 359, 435, 458
BtgI CCRYGG 1 cut(s) 436
BtsCI GGATG 3 cut(s) 202, 310, 645
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 85, 460
CaiI CAGNNNCTG 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 378
Csp6I GTAC 2 cut(s) 473, 587
CviQI GTAC 2 cut(s) 473, 587
DdeI CTNAG 2 cut(s) 510, 666
DpnI GATC 3 cut(s) 129, 150, 417
DpnII GATC 3 cut(s) 127, 148, 415
EaeI YGGCCR 3 cut(s) 357, 433, 456
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
Eco130I CCWWGG 2 cut(s) 246, 436
Eco47I GGWCC 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 246, 436
ErhI CCWWGG 2 cut(s) 246, 436
FaqI GGGAC 3 cut(s) 22, 364, 661
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 3 cut(s) 189, 297, 652
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 233
GluI GCNGC 1 cut(s) 264
GsaI CCCAGC 1 cut(s) 385
HaeIII GGCC 4 cut(s) 201, 359, 435, 458
HinfI GANTC 3 cut(s) 395, 562, 578
HphI GGTGA 3 cut(s) 41, 64, 308
Hpy166II GTNNAC 2 cut(s) 230, 507
Hpy188I TCNGA 3 cut(s) 394, 400, 567
Hpy188III TCNNGA 4 cut(s) 294, 496, 512, 616
Hpy8I GTNNAC 2 cut(s) 230, 507
HpyAV CCTTC 4 cut(s) 47, 116, 399, 514
HpyCH4V TGCA 6 cut(s) 14, 87, 302, 542, 643, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 132, 242, 464
HpyF3I CTNAG 2 cut(s) 510, 666
KflI GGGWCCC 1 cut(s) 378
Kzo9I GATC 3 cut(s) 127, 148, 415
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 232, 630
MaeI CTAG 1 cut(s) 233
MalI GATC 3 cut(s) 129, 150, 417
MboI GATC 3 cut(s) 127, 148, 415
MboII GAAGA 4 cut(s) 62, 496, 571, 633
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 2 cut(s) 216, 469
MlsI TGGCCA 3 cut(s) 359, 435, 458
MluCI AATT 2 cut(s) 117, 420
MluNI TGGCCA 3 cut(s) 359, 435, 458
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 6 cut(s) 151, 177, 272, 301, 324, 568
Mox20I TGGCCA 3 cut(s) 359, 435, 458
MroXI GAANNNNTTC 2 cut(s) 491, 530
MscI TGGCCA 3 cut(s) 359, 435, 458
MseI TTAA 1 cut(s) 450
MslI CAYNNNNRTG 4 cut(s) 207, 429, 435, 441
Msp20I TGGCCA 3 cut(s) 359, 435, 458
MspA1I CMGCKG 1 cut(s) 263
MwoI GCNNNNNNNGC 4 cut(s) 84, 132, 242, 464
NcoI CCATGG 1 cut(s) 436
NdeII GATC 3 cut(s) 127, 148, 415
NlaIV GGNNCC 4 cut(s) 58, 379, 380, 468
NspI RCATGY 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 83
PdmI GAANNNNTTC 2 cut(s) 491, 530
PfeI GAWTC 2 cut(s) 395, 562
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
PspFI CCCAGC 1 cut(s) 381
PspN4I GGNNCC 4 cut(s) 58, 379, 380, 468
PspPI GGNCC 1 cut(s) 378
PspPPI RGGWCCY 1 cut(s) 378
PspXI VCTCGAGB 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 474, 588
RsaNI GTAC 2 cut(s) 473, 587
RseI CAYNNNNRTG 4 cut(s) 207, 429, 435, 441
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 3 cut(s) 127, 148, 415
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 1 cut(s) 587
SduI GDGCHC 2 cut(s) 216, 469
SetI ASST 8 cut(s) 70, 77, 265, 387, 480, 494, 636, 691
SfaNI GCATC 2 cut(s) 232, 630
Sfr274I CTCGAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 165
SmiMI CAYNNNNRTG 4 cut(s) 207, 429, 435, 441
SmlI CTYRAG 3 cut(s) 165, 292, 629
SmoI CTYRAG 3 cut(s) 165, 292, 629
Sse9I AATT 2 cut(s) 117, 420
SspMI CTAG 1 cut(s) 233
StyI CCWWGG 2 cut(s) 246, 436
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 117, 420
TatI WGTACW 2 cut(s) 472, 586
TfiI GAWTC 2 cut(s) 395, 562
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 25, 413
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 378
XapI RAATTY 1 cut(s) 420
XceI RCATGY 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 229
XmnI GAANNNNTTC 2 cut(s) 491, 530
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.