Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013026

Physical Location & Seq

Genomic Coordinates Forward (+)

38740734 .. 38742787

Gene Structure 2054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG344100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAACTTTCAAGTCATCAAGAAGGGCAGATCCCAATCTCAATCCCAATCCCTATCCCAATCCCAATAAATTCTTCTTATGGTGCTGGTGGACATGGGCATGGACACATGATCCATCATCATCATCATCATGAGCCTGCAGCGCCCCACACCCACACCCTCACCCACAACAACCACCTCATTACCTCTTCAGCAGCAGCAGTAGTAGCACCACCACCACCACCACAAAATCAAATCCCTGCCTCCATTAACAATAATGGGTCCTCCATTCCCAAAACCGCTAGCCTAGATCAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGCATGTCAATCATGTCAATGTGGCTTACAACAACAACAACAACAACAACAGCGGCAGCAACAACAACAAGAAAGTGGTGAACAGCAGCATCAAGTACAAAGAGTGCCTGAAGAACCATGCAGCAGCCATGGGAGGGACTGCAACTGATGGCTGTGGTGAGTTCATGCCCAGTGGAGAAGAAGGCACCATTGAAGCTCTCACCTGCTCTGCCTGCAACTGCCATAGAAACTTCCACAGAAAAGAAATTGAAGGTGATCATGGCATGTCCTCATGGGATCTCAACAGCAACACTCGGGTTGGTACTGGTGGGAGGAAAGTCCTATTAGGCCATCCCAATGGGCACAAGAACATGAGTATACTAGCCCCTGATGCCTTGGGTTTCCACACAGCTGCTAATCCCACAGGAGGCTTCTTACCCTCAAGAACTGTACCACATCATCCTCACCACCACCCCCACCAGATGATAATGTCGTACAATAACAACATGGCCATTGGTGGGTTGATGGGGTCCCAGCTTCCTTCAGAATCTGATGAGCAAGAACAAGATCAAATTCATCATCATGGCCATGGTGGTGGGGTTAATGTGGCCAGCAGGGCACCAGTACAGCTTGTGAAGAAAAGGTTCAGGACAAAGTTTACTCAGGAACAGAAGGAGAAAATGTTCAACTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAAGAGGAGTCTGTTGTACAAAACTTCTGCCATGAGATTGGTGTCAAGAGAAGAGTTCTCAAGGTTTGGATGCACAACAATAAACACAATCTGGCTAAGAATAAGTCCCAACCCCCACCTAGTACTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

385

Amino Acids

42.15

Weight (kDa)

6.84

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	138 - 190	1.6e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca	FvH4_5g27650
malus_domestica	MD15G1443500.v1.1
prunus_persica	Prupe.1G586000_v2.0.a1
pyrus_communis	pycom08g21540
rosa_chinensis	RchiOBHm_Chr7g0219261
rosa_laevigata	RLG00000002301
rosa_multiflora	Rmu_sc0009785.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240110
rosa_rugosa	Rorug07G0183000
rosa_samantha	Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana	Rw7G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	533
AccB1I	GGYRCC	2 cut(s)	506, 919
AccI	GTMKAC	1 cut(s)	679
AciI	CCGC	2 cut(s)	279, 375
AclWI	GGATC	3 cut(s)	25, 106, 606
AcoI	YGGCCR	3 cut(s)	810, 886, 909
AcsI	RAATTY	2 cut(s)	70, 873
AcuI	CTGAAG	3 cut(s)	174, 452, 828
AfaI	GTAC	7 cut(s)	419, 625, 753, 797, 927, 1041, 1147
AfiI	CCNNNNNNNGG	4 cut(s)	292, 456, 728, 819
AgsI	TTSAA	4 cut(s)	12, 515, 572, 988
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AloI	GAACNNNNNNTCC	2 cut(s)	968, 1000
AluBI	AGCT	4 cut(s)	518, 713, 838, 931
AluI	AGCT	4 cut(s)	518, 713, 838, 931
AlwI	GGATC	3 cut(s)	25, 106, 606
AlwNI	CAGNNNCTG	1 cut(s)	851
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	4 cut(s)	649, 810, 886, 909
ApeKI	GCWGC	9 cut(s)	140, 194, 197, 378, 408, 443, 446, 713, 1151
ApoI	RAATTY	2 cut(s)	70, 873
Asp700I	GAANNNNTTC	2 cut(s)	944, 983
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	261, 831
AsuHPI	GGTGA	6 cut(s)	154, 412, 491, 514, 587, 758
AsuNHI	GCTAGC	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	615
AvaII	GGWCC	2 cut(s)	261, 831
BaeGI	GKGCMC	2 cut(s)	666, 922
BalI	TGGCCA	3 cut(s)	812, 888, 911
BanI	GGYRCC	2 cut(s)	506, 919
BbvI	GCAGC	9 cut(s)	152, 206, 209, 390, 420, 455, 458, 700, 1138
BccI	CCATC	4 cut(s)	123, 464, 660, 820
BclI	TGATCA	1 cut(s)	577
BfaI	CTAG	4 cut(s)	282, 287, 683, 1143
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	533
BglI	GCCNNNNNGGC	1 cut(s)	917
BmcAI	AGTACT	1 cut(s)	1147
Bme18I	GGWCC	2 cut(s)	261, 831
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	2 cut(s)	261, 831
BmiI	GGNNCC	5 cut(s)	262, 508, 832, 833, 921
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	3 cut(s)	420, 682, 1083
BmtI	GCTAGC	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	486
BpuEI	CTTGAG	2 cut(s)	727, 1067
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	450, 696, 889
BsaXI	ACNNNNNCTCC	2 cut(s)	968, 998
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 456, 728, 819
Bse1I	ACTGG	3 cut(s)	492, 631, 923
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	450, 696, 889
BseGI	GGATG	4 cut(s)	322, 652, 760, 1098
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	4 cut(s)	292, 456, 728, 819
BseMII	CTCAG	1 cut(s)	977
BseNI	ACTGG	3 cut(s)	492, 631, 923
BseRI	GAGGAG	8 cut(s)	311, 314, 317, 320, 323, 326, 335, 1043
BseSI	GKGCMC	2 cut(s)	666, 922
BseXI	GCAGC	9 cut(s)	152, 206, 209, 390, 420, 455, 458, 700, 1138
BseYI	CCCAGC	1 cut(s)	834
BshFI	GGCC	4 cut(s)	651, 812, 888, 911
BshNI	GGYRCC	2 cut(s)	506, 919
BsiHKCI	CYCGRG	1 cut(s)	615
BslFI	GGGAC	3 cut(s)	472, 817, 1114
BslI	CCNNNNNNNGG	4 cut(s)	292, 456, 728, 819
BsmFI	GGGAC	3 cut(s)	472, 817, 1114
BsnI	GGCC	4 cut(s)	651, 812, 888, 911
BsoBI	CYCGRG	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	666, 922
Bsp1407I	TGTACA	1 cut(s)	1039
Bsp143I	GATC	6 cut(s)	30, 111, 289, 577, 598, 868
Bsp19I	CCATGG	2 cut(s)	450, 889
BspACI	CCGC	2 cut(s)	279, 375
BspANI	GGCC	4 cut(s)	651, 812, 888, 911
BspCNI	CTCAG	1 cut(s)	976
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	5 cut(s)	262, 508, 832, 833, 921
BspMAI	CTGCAG	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	533
BspOI	GCTAGC	1 cut(s)	285
BspPI	GGATC	3 cut(s)	25, 106, 606
BspT107I	GGYRCC	2 cut(s)	506, 919
BsrGI	TGTACA	1 cut(s)	1039
BsrI	ACTGG	3 cut(s)	492, 631, 923
BssECI	CCNNGG	3 cut(s)	450, 696, 889
BssMI	GATC	6 cut(s)	30, 111, 289, 577, 598, 868
BssNAI	GTATAC	1 cut(s)	680
BssT1I	CCWWGG	3 cut(s)	450, 696, 889
Bst1107I	GTATAC	1 cut(s)	680
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	2 cut(s)	193, 1069
BstAUI	TGTACA	1 cut(s)	1039
BstC8I	GCNNGC	4 cut(s)	138, 283, 535, 913
BstDEI	CTNAG	3 cut(s)	963, 1119, 1155
BstDSI	CCRYGG	2 cut(s)	450, 889
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	4 cut(s)	322, 652, 760, 1098
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	6 cut(s)	33, 114, 292, 580, 601, 871
BstMBI	GATC	6 cut(s)	30, 111, 289, 577, 598, 868
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 206, 534, 692, 917
BstNSI	RCATGY	2 cut(s)	329, 589
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	2 cut(s)	666, 922
BstV1I	GCAGC	9 cut(s)	152, 206, 209, 390, 420, 455, 458, 700, 1138
BstX2I	RGATCY	2 cut(s)	30, 598
BstXI	CCANNNNNNTGG	3 cut(s)	659, 896, 1061
BstYI	RGATCY	2 cut(s)	30, 598
BstZ17I	GTATAC	1 cut(s)	680
BsuRI	GGCC	4 cut(s)	651, 812, 888, 911
BtgI	CCRYGG	2 cut(s)	450, 889
BtsCI	GGATG	4 cut(s)	322, 652, 760, 1098
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	4 cut(s)	138, 283, 535, 913
CaiI	CAGNNNCTG	1 cut(s)	851
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	261, 831
Csp6I	GTAC	7 cut(s)	418, 624, 752, 796, 926, 1040, 1146
CviQI	GTAC	7 cut(s)	418, 624, 752, 796, 926, 1040, 1146
DdeI	CTNAG	3 cut(s)	963, 1119, 1155
DpnI	GATC	6 cut(s)	32, 113, 291, 579, 600, 870
DpnII	GATC	6 cut(s)	30, 111, 289, 577, 598, 868
EaeI	YGGCCR	3 cut(s)	810, 886, 909
Eam1104I	CTCTTC	2 cut(s)	193, 1069
EarI	CTCTTC	2 cut(s)	193, 1069
Eco130I	CCWWGG	3 cut(s)	450, 696, 889
Eco47I	GGWCC	2 cut(s)	261, 831
Eco57I	CTGAAG	3 cut(s)	174, 452, 828
Eco88I	CYCGRG	1 cut(s)	615
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	2 cut(s)	261, 831
EcoT14I	CCWWGG	3 cut(s)	450, 696, 889
ErhI	CCWWGG	3 cut(s)	450, 696, 889
FaqI	GGGAC	3 cut(s)	472, 817, 1114
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	679
FokI	GGATG	4 cut(s)	329, 639, 747, 1105
FspBI	CTAG	4 cut(s)	282, 287, 683, 1143
GlaI	GCGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	838
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	4 cut(s)	651, 812, 888, 911
HhaI	GCGC	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	3 cut(s)	848, 1015, 1031
HphI	GGTGA	6 cut(s)	154, 412, 491, 514, 587, 758
Hpy166II	GTNNAC	4 cut(s)	92, 403, 680, 960
Hpy188I	TCNGA	3 cut(s)	847, 853, 1020
Hpy188III	TCNNGA	7 cut(s)	20, 131, 293, 744, 949, 965, 1069
Hpy8I	GTNNAC	4 cut(s)	92, 403, 680, 960
HpyAV	CCTTC	5 cut(s)	17, 497, 566, 852, 967
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4V	TGCA	6 cut(s)	140, 443, 464, 537, 995, 1096
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 206, 534, 692, 917
HpyF3I	CTNAG	3 cut(s)	963, 1119, 1155
HspAI	GCGC	1 cut(s)	143
KflI	GGGWCCC	1 cut(s)	831
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	30, 111, 289, 577, 598, 868
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	9 cut(s)	152, 206, 209, 390, 420, 455, 458, 700, 1138
LweI	GCATC	3 cut(s)	420, 682, 1083
MaeI	CTAG	4 cut(s)	282, 287, 683, 1143
MalI	GATC	6 cut(s)	32, 113, 291, 579, 600, 870
MboI	GATC	6 cut(s)	30, 111, 289, 577, 598, 868
MboII	GAAGA	7 cut(s)	66, 180, 445, 512, 949, 1024, 1086
MflI	RGATCY	2 cut(s)	30, 598
MhlI	GDGCHC	2 cut(s)	666, 922
MlsI	TGGCCA	3 cut(s)	812, 888, 911
MluCI	AATT	3 cut(s)	70, 567, 873
MluNI	TGGCCA	3 cut(s)	812, 888, 911
MlyI	GAGTC	1 cut(s)	1040
Mox20I	TGGCCA	3 cut(s)	812, 888, 911
MroXI	GAANNNNTTC	2 cut(s)	944, 983
MscI	TGGCCA	3 cut(s)	812, 888, 911
MseI	TTAA	2 cut(s)	249, 903
MslI	CAYNNNNRTG	7 cut(s)	99, 129, 339, 657, 882, 888, 894
Msp20I	TGGCCA	3 cut(s)	812, 888, 911
MspA1I	CMGCKG	2 cut(s)	375, 713
MwoI	GCNNNNNNNGC	5 cut(s)	142, 206, 534, 692, 917
NcoI	CCATGG	2 cut(s)	450, 889
NdeII	GATC	6 cut(s)	30, 111, 289, 577, 598, 868
NheI	GCTAGC	1 cut(s)	281
NlaIV	GGNNCC	5 cut(s)	262, 508, 832, 833, 921
NspI	RCATGY	2 cut(s)	329, 589
PagI	TCATGA	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	533
PdmI	GAANNNNTTC	2 cut(s)	944, 983
PfeI	GAWTC	2 cut(s)	848, 1015
PleI	GAGTC	1 cut(s)	1039
PpsI	GAGTC	1 cut(s)	1039
PpuMI	RGGWCCY	2 cut(s)	261, 831
Psp5II	RGGWCCY	2 cut(s)	261, 831
PspFI	CCCAGC	1 cut(s)	834
PspN4I	GGNNCC	5 cut(s)	262, 508, 832, 833, 921
PspPI	GGNCC	2 cut(s)	261, 831
PspPPI	RGGWCCY	2 cut(s)	261, 831
PstI	CTGCAG	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	2 cut(s)	30, 598
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	7 cut(s)	419, 625, 753, 797, 927, 1041, 1147
RsaNI	GTAC	7 cut(s)	418, 624, 752, 796, 926, 1040, 1146
RseI	CAYNNNNRTG	7 cut(s)	99, 129, 339, 657, 882, 888, 894
SaqAI	TTAA	2 cut(s)	249, 903
Sau3AI	GATC	6 cut(s)	30, 111, 289, 577, 598, 868
Sau96I	GGNCC	2 cut(s)	261, 831
ScaI	AGTACT	1 cut(s)	1147
SchI	GAGTC	1 cut(s)	1040
SduI	GDGCHC	2 cut(s)	666, 922
SfaNI	GCATC	3 cut(s)	420, 682, 1083
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	2 cut(s)	261, 831
SmiMI	CAYNNNNRTG	7 cut(s)	99, 129, 339, 657, 882, 888, 894
SmlI	CTYRAG	2 cut(s)	742, 1082
SmoI	CTYRAG	2 cut(s)	742, 1082
Sse9I	AATT	3 cut(s)	70, 567, 873
SsiI	CCGC	2 cut(s)	279, 375
SspMI	CTAG	4 cut(s)	282, 287, 683, 1143
StyI	CCWWGG	3 cut(s)	450, 696, 889
TaaI	ACNGT	1 cut(s)	751
TasI	AATT	3 cut(s)	70, 567, 873
TatI	WGTACW	4 cut(s)	417, 925, 1039, 1145
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	848, 1015
Tru1I	TTAA	2 cut(s)	249, 903
Tru9I	TTAA	2 cut(s)	249, 903
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	9 cut(s)	140, 194, 197, 378, 408, 443, 446, 713, 1151
TspDTI	ATGAA	2 cut(s)	475, 866
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	261, 831
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	2 cut(s)	70, 873
XceI	RCATGY	2 cut(s)	329, 589
XmiI	GTMKAC	1 cut(s)	679
XmnI	GAANNNNTTC	2 cut(s)	944, 983
XspI	CTAG	4 cut(s)	282, 287, 683, 1143
ZrmI	AGTACT	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.