RchiOBHm_Chr7g0219261

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013026
Physical Location & Seq
Forward (+)
37596256 .. 37598657
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19624

Sequence Viewer

Length: 1149 bp
ATGGAACTTTCAAGTCATCAAGAAGGGCAGATCCCAATCTCAATCCCAATCCCTATCCCAATCCCAATAAATTCTTCTTATGGTGCTGGTGGACATGGGCATGGACACATGATCCATCATCATCATCATCATGAGCCTGCAGCGCCCCACACCCACACCCTCACCCACAACAACCACCTCATTACCTCTTCAGCAGCAGCAGTAGCAGCACCACCTCCACCACAAAATCAAATCCCTGCCTCCATTAACAATAATGGGTCCTCCATTCCCAAAACCGCTAGCCTAGATCAGGAGGAGGAGGAGGAGGAGGATGAGGAGCATGTCAATCATGTCAATGTGGCTTACAACAACAACAACAACAACAGCGGCAGCAACAATAACAAGAAAGTGGTGAACAGCAGCATCAAGTACAAAGAGTGCCTGAAGAACCATGCAGCAGCCATGGGAGGGACTGCAACTGATGGGTGTGGTGAGTTCATGCCCAGTGGAGAAGAAGGCACCATTGAAGCTCTCACCTGCTCTGCCTGCAACTGCCACAGAAACTTCCACAGAAAAGAAATTGAAGGTGATCATGGCATGTCCTCATGGGATCTCAACAGCAACACTCGGGTTGGTACTGGTGGGAGGAAAGTCCTATTAGGCCATCCCAATGGGCACAAGAACATGAGTATACTAGCCCCTGATGCCTTGGGTTTCCACACAGCTGCTAATCCCACAGGAGGCTTCTTACCCTCAAGAACTGCACCACATCATCCTCACCACCACCCCCACCAGATGATAATGTCGTACAATAACAACATGGCCATTGGTGGGTTGATGGGGTCCCAGCTTCCTTCAGAATCTGATGAGCAAGAACAAGATCAAATTCATCATCATGGCCATGGTGGTGGGGTTAATGTGGCCAGCAGGGCACCAGTACAGCTTGTGAAGAAAAGGTTCAGGACAAAGTTTACTCAGGAACAGAAGGAGAAAATGTTCAACTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAAGAGGAGTCTGTTGTACAAAACTTCTGCCATGAGATTGGTGTCAAGAGAAGAGTTCTCAAGGTTTGGATGCACAACAATAAACACAATCTGGCTAAGAATAAGTCCCAACCCCCACCTAGTACTGCTGCTTAG

Protein Analysis

382

Amino Acids

41.76

Weight (kDa)

6.95

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 135 - 187 1.6e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca FvH4_5g27650
malus_domestica MD15G1443500.v1.1
prunus_persica Prupe.1G586000_v2.0.a1
pyrus_communis pycom08g21540
rosa_chinensis RchiOBHm_Chr7g0219261
rosa_laevigata RLG00000002301
rosa_multiflora Rmu_sc0009785.1_g000021
rosa_roxburghii Rroxscaffold_3G00240110
rosa_rugosa Rorug07G0183000
rosa_samantha Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana Rw7G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 524
Acc36I ACCTGC 1 cut(s) 524
AccB1I GGYRCC 2 cut(s) 497, 910
AccI GTMKAC 1 cut(s) 670
AciI CCGC 2 cut(s) 276, 366
AclWI GGATC 3 cut(s) 25, 106, 597
AcoI YGGCCR 3 cut(s) 801, 877, 900
AcsI RAATTY 2 cut(s) 70, 864
AcuI CTGAAG 3 cut(s) 174, 443, 819
AfaI GTAC 6 cut(s) 410, 616, 788, 918, 1032, 1138
AfiI CCNNNNNNNGG 4 cut(s) 289, 447, 719, 810
AgsI TTSAA 4 cut(s) 12, 506, 563, 979
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AloI GAACNNNNNNTCC 2 cut(s) 959, 991
AluBI AGCT 4 cut(s) 509, 704, 829, 922
AluI AGCT 4 cut(s) 509, 704, 829, 922
AlwI GGATC 3 cut(s) 25, 106, 597
AlwNI CAGNNNCTG 1 cut(s) 842
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 4 cut(s) 640, 801, 877, 900
ApoI RAATTY 2 cut(s) 70, 864
Asp700I GAANNNNTTC 2 cut(s) 935, 974
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 258, 822
AsuHPI GGTGA 6 cut(s) 154, 403, 482, 505, 578, 749
AsuNHI GCTAGC 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 2 cut(s) 258, 822
BaeGI GKGCMC 2 cut(s) 657, 913
BalI TGGCCA 3 cut(s) 803, 879, 902
BanI GGYRCC 2 cut(s) 497, 910
BccI CCATC 4 cut(s) 123, 455, 651, 811
BclI TGATCA 1 cut(s) 568
BfaI CTAG 4 cut(s) 279, 284, 674, 1134
BfmI CTRYAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 524
BglI GCCNNNNNGGC 1 cut(s) 908
BmcAI AGTACT 1 cut(s) 1138
Bme18I GGWCC 2 cut(s) 258, 822
BmeT110I CYCGRG 1 cut(s) 606
BmgT120I GGNCC 2 cut(s) 258, 822
BmiI GGNNCC 5 cut(s) 259, 499, 823, 824, 912
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 411, 673, 1074
BmtI GCTAGC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 477
BpuEI CTTGAG 2 cut(s) 718, 1058
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 3 cut(s) 441, 687, 880
BsaXI ACNNNNNCTCC 2 cut(s) 959, 989
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 447, 719, 810
Bse1I ACTGG 3 cut(s) 483, 622, 914
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 441, 687, 880
BseGI GGATG 4 cut(s) 316, 643, 751, 1089
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 4 cut(s) 289, 447, 719, 810
BseMII CTCAG 1 cut(s) 968
BseNI ACTGG 3 cut(s) 483, 622, 914
BseRI GAGGAG 7 cut(s) 308, 311, 314, 317, 320, 329, 1034
BseSI GKGCMC 2 cut(s) 657, 913
BseYI CCCAGC 1 cut(s) 825
BsgI GTGCAG 1 cut(s) 726
BshFI GGCC 4 cut(s) 642, 803, 879, 902
BshNI GGYRCC 2 cut(s) 497, 910
BsiHKCI CYCGRG 1 cut(s) 606
BslFI GGGAC 3 cut(s) 463, 808, 1105
BslI CCNNNNNNNGG 4 cut(s) 289, 447, 719, 810
BsmFI GGGAC 3 cut(s) 463, 808, 1105
BsnI GGCC 4 cut(s) 642, 803, 879, 902
BsoBI CYCGRG 1 cut(s) 606
Bsp1286I GDGCHC 2 cut(s) 657, 913
Bsp1407I TGTACA 1 cut(s) 1030
Bsp143I GATC 6 cut(s) 30, 111, 286, 568, 589, 859
Bsp19I CCATGG 2 cut(s) 441, 880
BspACI CCGC 2 cut(s) 276, 366
BspANI GGCC 4 cut(s) 642, 803, 879, 902
BspCNI CTCAG 1 cut(s) 967
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 5 cut(s) 259, 499, 823, 824, 912
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 524
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 3 cut(s) 25, 106, 597
BspT107I GGYRCC 2 cut(s) 497, 910
BsrGI TGTACA 1 cut(s) 1030
BsrI ACTGG 3 cut(s) 483, 622, 914
BssECI CCNNGG 3 cut(s) 441, 687, 880
BssMI GATC 6 cut(s) 30, 111, 286, 568, 589, 859
BssNAI GTATAC 1 cut(s) 671
BssT1I CCWWGG 3 cut(s) 441, 687, 880
Bst1107I GTATAC 1 cut(s) 671
Bst6I CTCTTC 2 cut(s) 193, 1060
BstAUI TGTACA 1 cut(s) 1030
BstC8I GCNNGC 4 cut(s) 138, 280, 526, 904
BstDEI CTNAG 3 cut(s) 954, 1110, 1146
BstDSI CCRYGG 2 cut(s) 441, 880
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 4 cut(s) 316, 643, 751, 1089
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 6 cut(s) 33, 114, 289, 571, 592, 862
BstMBI GATC 6 cut(s) 30, 111, 286, 568, 589, 859
BstMWI GCNNNNNNNGC 6 cut(s) 142, 203, 206, 525, 683, 908
BstNSI RCATGY 2 cut(s) 323, 580
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 2 cut(s) 657, 913
BstX2I RGATCY 2 cut(s) 30, 589
BstXI CCANNNNNNTGG 3 cut(s) 650, 887, 1052
BstYI RGATCY 2 cut(s) 30, 589
BstZ17I GTATAC 1 cut(s) 671
BsuRI GGCC 4 cut(s) 642, 803, 879, 902
BtgI CCRYGG 2 cut(s) 441, 880
BtsCI GGATG 4 cut(s) 316, 643, 751, 1089
BtsIMutI CAGTG 1 cut(s) 490
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 4 cut(s) 138, 280, 526, 904
CaiI CAGNNNCTG 1 cut(s) 842
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 258, 822
Csp6I GTAC 6 cut(s) 409, 615, 787, 917, 1031, 1137
CviQI GTAC 6 cut(s) 409, 615, 787, 917, 1031, 1137
DdeI CTNAG 3 cut(s) 954, 1110, 1146
DpnI GATC 6 cut(s) 32, 113, 288, 570, 591, 861
DpnII GATC 6 cut(s) 30, 111, 286, 568, 589, 859
EaeI YGGCCR 3 cut(s) 801, 877, 900
Eam1104I CTCTTC 2 cut(s) 193, 1060
EarI CTCTTC 2 cut(s) 193, 1060
Eco130I CCWWGG 3 cut(s) 441, 687, 880
Eco47I GGWCC 2 cut(s) 258, 822
Eco57I CTGAAG 3 cut(s) 174, 443, 819
Eco88I CYCGRG 1 cut(s) 606
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoO109I RGGNCCY 2 cut(s) 258, 822
EcoT14I CCWWGG 3 cut(s) 441, 687, 880
ErhI CCWWGG 3 cut(s) 441, 687, 880
FaqI GGGAC 3 cut(s) 463, 808, 1105
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 670
FokI GGATG 4 cut(s) 323, 630, 738, 1096
FspBI CTAG 4 cut(s) 279, 284, 674, 1134
GlaI GCGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 829
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 4 cut(s) 642, 803, 879, 902
HhaI GCGC 1 cut(s) 145
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 3 cut(s) 839, 1006, 1022
HphI GGTGA 6 cut(s) 154, 403, 482, 505, 578, 749
Hpy166II GTNNAC 4 cut(s) 92, 394, 671, 951
Hpy188I TCNGA 3 cut(s) 838, 844, 1011
Hpy188III TCNNGA 7 cut(s) 20, 131, 290, 735, 940, 956, 1060
Hpy8I GTNNAC 4 cut(s) 92, 394, 671, 951
HpyAV CCTTC 5 cut(s) 17, 488, 557, 843, 958
HpyCH4V TGCA 7 cut(s) 140, 434, 455, 528, 743, 986, 1087
HpyF10VI GCNNNNNNNGC 6 cut(s) 142, 203, 206, 525, 683, 908
HpyF3I CTNAG 3 cut(s) 954, 1110, 1146
HspAI GCGC 1 cut(s) 143
KflI GGGWCCC 1 cut(s) 822
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 6 cut(s) 30, 111, 286, 568, 589, 859
LmnI GCTCC 1 cut(s) 316
LweI GCATC 3 cut(s) 411, 673, 1074
MaeI CTAG 4 cut(s) 279, 284, 674, 1134
MalI GATC 6 cut(s) 32, 113, 288, 570, 591, 861
MboI GATC 6 cut(s) 30, 111, 286, 568, 589, 859
MboII GAAGA 7 cut(s) 66, 180, 436, 503, 940, 1015, 1077
MflI RGATCY 2 cut(s) 30, 589
MhlI GDGCHC 2 cut(s) 657, 913
MlsI TGGCCA 3 cut(s) 803, 879, 902
MluCI AATT 3 cut(s) 70, 558, 864
MluNI TGGCCA 3 cut(s) 803, 879, 902
MlyI GAGTC 1 cut(s) 1031
Mox20I TGGCCA 3 cut(s) 803, 879, 902
MroXI GAANNNNTTC 2 cut(s) 935, 974
MscI TGGCCA 3 cut(s) 803, 879, 902
MseI TTAA 2 cut(s) 246, 894
MslI CAYNNNNRTG 7 cut(s) 99, 129, 333, 648, 873, 879, 885
Msp20I TGGCCA 3 cut(s) 803, 879, 902
MspA1I CMGCKG 2 cut(s) 366, 704
MwoI GCNNNNNNNGC 6 cut(s) 142, 203, 206, 525, 683, 908
NcoI CCATGG 2 cut(s) 441, 880
NdeII GATC 6 cut(s) 30, 111, 286, 568, 589, 859
NheI GCTAGC 1 cut(s) 278
NlaIV GGNNCC 5 cut(s) 259, 499, 823, 824, 912
NspI RCATGY 2 cut(s) 323, 580
PagI TCATGA 1 cut(s) 130
PaqCI CACCTGC 1 cut(s) 524
PdmI GAANNNNTTC 2 cut(s) 935, 974
PfeI GAWTC 2 cut(s) 839, 1006
PleI GAGTC 1 cut(s) 1030
PpsI GAGTC 1 cut(s) 1030
PpuMI RGGWCCY 2 cut(s) 258, 822
Psp5II RGGWCCY 2 cut(s) 258, 822
PspFI CCCAGC 1 cut(s) 825
PspN4I GGNNCC 5 cut(s) 259, 499, 823, 824, 912
PspPI GGNCC 2 cut(s) 258, 822
PspPPI RGGWCCY 2 cut(s) 258, 822
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 842
PsuI RGATCY 2 cut(s) 30, 589
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 6 cut(s) 410, 616, 788, 918, 1032, 1138
RsaNI GTAC 6 cut(s) 409, 615, 787, 917, 1031, 1137
RseI CAYNNNNRTG 7 cut(s) 99, 129, 333, 648, 873, 879, 885
SaqAI TTAA 2 cut(s) 246, 894
Sau3AI GATC 6 cut(s) 30, 111, 286, 568, 589, 859
Sau96I GGNCC 2 cut(s) 258, 822
ScaI AGTACT 1 cut(s) 1138
SchI GAGTC 1 cut(s) 1031
SduI GDGCHC 2 cut(s) 657, 913
SfaNI GCATC 3 cut(s) 411, 673, 1074
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 2 cut(s) 258, 822
SmiMI CAYNNNNRTG 7 cut(s) 99, 129, 333, 648, 873, 879, 885
SmlI CTYRAG 2 cut(s) 733, 1073
SmoI CTYRAG 2 cut(s) 733, 1073
Sse9I AATT 3 cut(s) 70, 558, 864
SsiI CCGC 2 cut(s) 276, 366
SspMI CTAG 4 cut(s) 279, 284, 674, 1134
StyI CCWWGG 3 cut(s) 441, 687, 880
TasI AATT 3 cut(s) 70, 558, 864
TatI WGTACW 4 cut(s) 408, 916, 1030, 1136
TauI GCSGC 1 cut(s) 369
TfiI GAWTC 2 cut(s) 839, 1006
Tru1I TTAA 2 cut(s) 246, 894
Tru9I TTAA 2 cut(s) 246, 894
TscAI CASTG 1 cut(s) 490
TspDTI ATGAA 2 cut(s) 466, 857
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 2 cut(s) 258, 822
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 2 cut(s) 70, 864
XceI RCATGY 2 cut(s) 323, 580
XmiI GTMKAC 1 cut(s) 670
XmnI GAANNNNTTC 2 cut(s) 935, 974
XspI CTAG 4 cut(s) 279, 284, 674, 1134
ZrmI AGTACT 1 cut(s) 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.