RLG00000002301

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013026
Physical Location & Seq
Reverse (-)
31877003 .. 31878169
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002301

Sequence Viewer

Length: 1167 bp
ATGGAACTTTCGAGTCATCAAGAAGGGCAGATCCCGATCTCAATCCCAATCCCTATCCCAATCCCAATAAATTCTTCTTATGGTGCTGGTGGACATGGGCATGGACACATGATCCATCATCATCATCATCATGAGCCTGCAGCGCCCCACACCCACACCCACACCCACACCCTCATCCACAACAACCACCTCATTACCTCTTCAGCAGCAGCAGTAGTAGCACCACCACCACCACCACAAAATCAAATCCCTGCCTCCATTAACAATAATGGGTCCTCCATTCCCAAAACGACTAGCCTAGATCAGGAGGAGGAGGAGGAGGAGGATGAGGAGCATGTCAATCATGTCAATGTGGCTTACAACAACAACAACAACAACAACAGCGGCATCAACAATAACAAGAAAGTGGTGAACAGAAGCATCAAGTACAAAGAGTGCCTGAAGAACCATGCAGCAGCCATGGGAGGGACTGCAACTGATGGGTGTGGTGAGTTCATGCCCAGTGGGGAAGAAGGCACCATTGAAGCTCTCACCTGCTCTGCCTGCAACTGCCACAGAAACTTCCACAGAAAAGAAATTGAAGGTGATCATGGCATGTCCTCATGGGATCTCAACAGCAACACTCGGGTTGTTACTGGTGGGAGGAAAGTCCTATTAGGCCATCCCAATGGGCACAAGAACATGAGTATACTAGCCCCTGATGTCTTGGGTTTCCACACAGCTGCTAATCCCACAGGAGGCTTCTTACCCTCAAGAACTGCACCACATCATCCTCACCACCACCCCCACCAGATGATAATGTCTTACAATAACAACATGGCCATTGGTGGGTTGATGGGGTCCCAGCTCCCTTCAGAATCTGATGAGCAAGAACAAGATCAAATTCATCATCATGGCCATGGTGGTGGGGTTAATGTGGCCAGCAGGGCACCAGTACAGCTTGTGAAGAAAAGGTTCAGGACAAAGTTTACTCAGGAACAGAAGGAGAAAATGTTCAACTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAAGAGGAGTCTGTTGTACAAAACTTCTGCCATGAGATTGGTGTCAAGAGAAGAGTTCTCAAGGTTTGGATGCACAATAATAAACACAATCTGGCTAAGAATAAGTCCCAACCCCCACCTAGTACTACTGCTTAG

Protein Analysis

389

Amino Acids

42.71

Weight (kDa)

7.11

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 141 - 193 1.7e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca FvH4_5g27650
malus_domestica MD15G1443500.v1.1
prunus_persica Prupe.1G586000_v2.0.a1
pyrus_communis pycom08g21540
rosa_chinensis RchiOBHm_Chr7g0219261
rosa_laevigata RLG00000002301
rosa_multiflora Rmu_sc0009785.1_g000021
rosa_roxburghii Rroxscaffold_3G00240110
rosa_rugosa Rorug07G0183000
rosa_samantha Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana Rw7G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 542
Acc36I ACCTGC 1 cut(s) 542
AccB1I GGYRCC 2 cut(s) 515, 928
AccI GTMKAC 1 cut(s) 688
AciI CCGC 1 cut(s) 384
AclWI GGATC 3 cut(s) 25, 106, 615
AcoI YGGCCR 3 cut(s) 819, 895, 918
AcsI RAATTY 2 cut(s) 70, 882
AcuI CTGAAG 3 cut(s) 186, 461, 837
AfaI GTAC 4 cut(s) 428, 936, 1050, 1156
AfiI CCNNNNNNNGG 4 cut(s) 304, 465, 737, 828
AgsI TTSAA 3 cut(s) 524, 581, 997
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AloI GAACNNNNNNTCC 2 cut(s) 977, 1009
AluBI AGCT 4 cut(s) 527, 722, 847, 940
AluI AGCT 4 cut(s) 527, 722, 847, 940
AlwI GGATC 3 cut(s) 25, 106, 615
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 4 cut(s) 658, 819, 895, 918
ApeKI GCWGC 6 cut(s) 140, 206, 209, 452, 455, 722
ApoI RAATTY 2 cut(s) 70, 882
Asp700I GAANNNNTTC 2 cut(s) 953, 992
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 273, 840
AsuHPI GGTGA 5 cut(s) 421, 500, 523, 596, 767
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 2 cut(s) 273, 840
BaeGI GKGCMC 2 cut(s) 675, 931
BalI TGGCCA 3 cut(s) 821, 897, 920
BanI GGYRCC 2 cut(s) 515, 928
BbvI GCAGC 6 cut(s) 152, 218, 221, 464, 467, 709
BccI CCATC 4 cut(s) 123, 473, 669, 829
BclI TGATCA 1 cut(s) 586
BfaI CTAG 4 cut(s) 294, 299, 692, 1152
BfmI CTRYAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 542
BglI GCCNNNNNGGC 1 cut(s) 926
BisI GCNGC 7 cut(s) 141, 207, 210, 385, 453, 456, 723
BlsI GCNGC 7 cut(s) 142, 208, 211, 386, 454, 457, 724
BmcAI AGTACT 1 cut(s) 1156
Bme18I GGWCC 2 cut(s) 273, 840
BmeT110I CYCGRG 1 cut(s) 624
BmgT120I GGNCC 2 cut(s) 273, 840
BmiI GGNNCC 5 cut(s) 274, 517, 841, 842, 930
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 3 cut(s) 396, 429, 1092
BmuI ACTGGG 1 cut(s) 495
BpuEI CTTGAG 2 cut(s) 736, 1076
BsaBI GATNNNNATC 2 cut(s) 35, 41
BsaJI CCNNGG 2 cut(s) 459, 898
BsaXI ACNNNNNCTCC 2 cut(s) 977, 1007
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 465, 737, 828
Bse1I ACTGG 3 cut(s) 501, 640, 932
Bse8I GATNNNNATC 2 cut(s) 35, 41
BseDI CCNNGG 2 cut(s) 459, 898
BseGI GGATG 5 cut(s) 174, 331, 661, 769, 1107
BseJI GATNNNNATC 2 cut(s) 35, 41
BseLI CCNNNNNNNGG 4 cut(s) 304, 465, 737, 828
BseMII CTCAG 1 cut(s) 986
BseNI ACTGG 3 cut(s) 501, 640, 932
BseRI GAGGAG 7 cut(s) 323, 326, 329, 332, 335, 344, 1052
BseSI GKGCMC 2 cut(s) 675, 931
BseXI GCAGC 6 cut(s) 152, 218, 221, 464, 467, 709
BseYI CCCAGC 1 cut(s) 843
BsgI GTGCAG 1 cut(s) 744
BshFI GGCC 4 cut(s) 660, 821, 897, 920
BshNI GGYRCC 2 cut(s) 515, 928
BsiHKCI CYCGRG 1 cut(s) 624
BslFI GGGAC 3 cut(s) 481, 826, 1123
BslI CCNNNNNNNGG 4 cut(s) 304, 465, 737, 828
BsmFI GGGAC 3 cut(s) 481, 826, 1123
BsnI GGCC 4 cut(s) 660, 821, 897, 920
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 2 cut(s) 675, 931
Bsp1407I TGTACA 1 cut(s) 1048
Bsp143I GATC 7 cut(s) 30, 36, 111, 301, 586, 607, 877
Bsp19I CCATGG 2 cut(s) 459, 898
BspACI CCGC 1 cut(s) 384
BspANI GGCC 4 cut(s) 660, 821, 897, 920
BspCNI CTCAG 1 cut(s) 985
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 5 cut(s) 274, 517, 841, 842, 930
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 542
BspPI GGATC 3 cut(s) 25, 106, 615
BspT107I GGYRCC 2 cut(s) 515, 928
BsrGI TGTACA 1 cut(s) 1048
BsrI ACTGG 3 cut(s) 501, 640, 932
BssECI CCNNGG 2 cut(s) 459, 898
BssMI GATC 7 cut(s) 30, 36, 111, 301, 586, 607, 877
BssNAI GTATAC 1 cut(s) 689
BssT1I CCWWGG 2 cut(s) 459, 898
Bst1107I GTATAC 1 cut(s) 689
Bst6I CTCTTC 2 cut(s) 205, 1078
BstAUI TGTACA 1 cut(s) 1048
BstC8I GCNNGC 3 cut(s) 138, 544, 922
BstDEI CTNAG 3 cut(s) 972, 1128, 1164
BstDSI CCRYGG 2 cut(s) 459, 898
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 5 cut(s) 174, 331, 661, 769, 1107
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 7 cut(s) 33, 39, 114, 304, 589, 610, 880
BstMBI GATC 7 cut(s) 30, 36, 111, 301, 586, 607, 877
BstMWI GCNNNNNNNGC 4 cut(s) 142, 218, 543, 926
BstNSI RCATGY 2 cut(s) 338, 598
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 2 cut(s) 675, 931
BstV1I GCAGC 6 cut(s) 152, 218, 221, 464, 467, 709
BstX2I RGATCY 2 cut(s) 30, 607
BstXI CCANNNNNNTGG 3 cut(s) 668, 905, 1070
BstYI RGATCY 2 cut(s) 30, 607
BstZ17I GTATAC 1 cut(s) 689
BsuRI GGCC 4 cut(s) 660, 821, 897, 920
BtgI CCRYGG 2 cut(s) 459, 898
BtsCI GGATG 5 cut(s) 174, 331, 661, 769, 1107
BtsIMutI CAGTG 1 cut(s) 508
BveI ACCTGC 1 cut(s) 542
Cac8I GCNNGC 3 cut(s) 138, 544, 922
CaiI CAGNNNCTG 1 cut(s) 860
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 273, 840
Csp6I GTAC 4 cut(s) 427, 935, 1049, 1155
CviQI GTAC 4 cut(s) 427, 935, 1049, 1155
DdeI CTNAG 3 cut(s) 972, 1128, 1164
DpnI GATC 7 cut(s) 32, 38, 113, 303, 588, 609, 879
DpnII GATC 7 cut(s) 30, 36, 111, 301, 586, 607, 877
EaeI YGGCCR 3 cut(s) 819, 895, 918
Eam1104I CTCTTC 2 cut(s) 205, 1078
EarI CTCTTC 2 cut(s) 205, 1078
Eco130I CCWWGG 2 cut(s) 459, 898
Eco47I GGWCC 2 cut(s) 273, 840
Eco57I CTGAAG 3 cut(s) 186, 461, 837
Eco88I CYCGRG 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoO109I RGGNCCY 2 cut(s) 273, 840
EcoT14I CCWWGG 2 cut(s) 459, 898
ErhI CCWWGG 2 cut(s) 459, 898
FaqI GGGAC 3 cut(s) 481, 826, 1123
FbaI TGATCA 1 cut(s) 586
FblI GTMKAC 1 cut(s) 688
Fnu4HI GCNGC 7 cut(s) 141, 207, 210, 385, 453, 456, 723
FokI GGATG 5 cut(s) 161, 338, 648, 756, 1114
Fsp4HI GCNGC 7 cut(s) 141, 207, 210, 385, 453, 456, 723
FspBI CTAG 4 cut(s) 294, 299, 692, 1152
GlaI GCGC 1 cut(s) 144
GluI GCNGC 7 cut(s) 141, 207, 210, 385, 453, 456, 723
GsaI CCCAGC 1 cut(s) 847
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 4 cut(s) 660, 821, 897, 920
HhaI GCGC 1 cut(s) 145
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 4 cut(s) 13, 857, 1024, 1040
HphI GGTGA 5 cut(s) 421, 500, 523, 596, 767
Hpy166II GTNNAC 4 cut(s) 92, 412, 689, 969
Hpy188I TCNGA 3 cut(s) 856, 862, 1029
Hpy188III TCNNGA 8 cut(s) 20, 34, 131, 305, 753, 958, 974, 1078
Hpy8I GTNNAC 4 cut(s) 92, 412, 689, 969
HpyAV CCTTC 5 cut(s) 17, 506, 575, 861, 976
HpyCH4V TGCA 7 cut(s) 140, 452, 473, 546, 761, 1004, 1105
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 218, 543, 926
HpyF3I CTNAG 3 cut(s) 972, 1128, 1164
HspAI GCGC 1 cut(s) 143
KflI GGGWCCC 1 cut(s) 840
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 7 cut(s) 30, 36, 111, 301, 586, 607, 877
LmnI GCTCC 2 cut(s) 331, 852
Lsp1109I GCAGC 6 cut(s) 152, 218, 221, 464, 467, 709
LweI GCATC 3 cut(s) 396, 429, 1092
MaeI CTAG 4 cut(s) 294, 299, 692, 1152
MaeIII GTNAC 1 cut(s) 631
MalI GATC 7 cut(s) 32, 38, 113, 303, 588, 609, 879
MboI GATC 7 cut(s) 30, 36, 111, 301, 586, 607, 877
MboII GAAGA 7 cut(s) 66, 192, 454, 521, 958, 1033, 1095
MflI RGATCY 2 cut(s) 30, 607
MhlI GDGCHC 2 cut(s) 675, 931
MlsI TGGCCA 3 cut(s) 821, 897, 920
MluCI AATT 3 cut(s) 70, 576, 882
MluNI TGGCCA 3 cut(s) 821, 897, 920
MlyI GAGTC 2 cut(s) 22, 1049
Mox20I TGGCCA 3 cut(s) 821, 897, 920
MroXI GAANNNNTTC 2 cut(s) 953, 992
MscI TGGCCA 3 cut(s) 821, 897, 920
MseI TTAA 2 cut(s) 261, 912
MslI CAYNNNNRTG 7 cut(s) 99, 129, 348, 666, 891, 897, 903
Msp20I TGGCCA 3 cut(s) 821, 897, 920
MspA1I CMGCKG 2 cut(s) 384, 722
MwoI GCNNNNNNNGC 4 cut(s) 142, 218, 543, 926
NcoI CCATGG 2 cut(s) 459, 898
NdeII GATC 7 cut(s) 30, 36, 111, 301, 586, 607, 877
NlaIV GGNNCC 5 cut(s) 274, 517, 841, 842, 930
NspI RCATGY 2 cut(s) 338, 598
PagI TCATGA 1 cut(s) 130
PaqCI CACCTGC 1 cut(s) 542
PdmI GAANNNNTTC 2 cut(s) 953, 992
PfeI GAWTC 2 cut(s) 857, 1024
PkrI GCNGC 7 cut(s) 142, 208, 211, 386, 454, 457, 724
PleI GAGTC 2 cut(s) 21, 1048
PpsI GAGTC 2 cut(s) 21, 1048
PpuMI RGGWCCY 2 cut(s) 273, 840
Psp5II RGGWCCY 2 cut(s) 273, 840
PspFI CCCAGC 1 cut(s) 843
PspN4I GGNNCC 5 cut(s) 274, 517, 841, 842, 930
PspPI GGNCC 2 cut(s) 273, 840
PspPPI RGGWCCY 2 cut(s) 273, 840
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 2 cut(s) 30, 607
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 4 cut(s) 428, 936, 1050, 1156
RsaNI GTAC 4 cut(s) 427, 935, 1049, 1155
RseI CAYNNNNRTG 7 cut(s) 99, 129, 348, 666, 891, 897, 903
SaqAI TTAA 2 cut(s) 261, 912
SatI GCNGC 7 cut(s) 141, 207, 210, 385, 453, 456, 723
Sau3AI GATC 7 cut(s) 30, 36, 111, 301, 586, 607, 877
Sau96I GGNCC 2 cut(s) 273, 840
ScaI AGTACT 1 cut(s) 1156
SchI GAGTC 2 cut(s) 22, 1049
SduI GDGCHC 2 cut(s) 675, 931
SfaNI GCATC 3 cut(s) 396, 429, 1092
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 2 cut(s) 273, 840
SmiMI CAYNNNNRTG 7 cut(s) 99, 129, 348, 666, 891, 897, 903
SmlI CTYRAG 2 cut(s) 751, 1091
SmoI CTYRAG 2 cut(s) 751, 1091
Sse9I AATT 3 cut(s) 70, 576, 882
SsiI CCGC 1 cut(s) 384
SspMI CTAG 4 cut(s) 294, 299, 692, 1152
StyI CCWWGG 2 cut(s) 459, 898
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 70, 576, 882
TatI WGTACW 4 cut(s) 426, 934, 1048, 1154
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 2 cut(s) 857, 1024
Tru1I TTAA 2 cut(s) 261, 912
Tru9I TTAA 2 cut(s) 261, 912
TscAI CASTG 1 cut(s) 508
TseI GCWGC 6 cut(s) 140, 206, 209, 452, 455, 722
TspDTI ATGAA 2 cut(s) 484, 875
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 2 cut(s) 273, 840
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 2 cut(s) 70, 882
XceI RCATGY 2 cut(s) 338, 598
XmiI GTMKAC 1 cut(s) 688
XmnI GAANNNNTTC 2 cut(s) 953, 992
XspI CTAG 4 cut(s) 294, 299, 692, 1152
ZrmI AGTACT 1 cut(s) 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.