Rh7DG322200

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013026
Physical Location & Seq
Forward (+)
38529913 .. 38533205
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG322200.1

Sequence Viewer

Length: 1164 bp
ATGGAACTTTCAAGTCATCAAGAAGGGCAGATCCCAATCTCAATCCCAATCCCTATCCCAATCCCAATAAATTCTTCTTATGGTGCTGGTGGACATGGGCATGGACACATGATCCATCATCATCATCATCACCCACCTGCAGCGCCCCACACCCACACCCTCACCCACAACAACCACCTCATTACCTCCTCAGCAGCGGCAGTAGTAGCACCACCACCACCACCACAAAATCAAATCCCTGCCTCCATTAACAATAATGGGTCCTCCATTCCCAAAACCGCTAGCCTAGATCAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGCATGTCAATCATGTCAATGTGGCTTACAACAACAACAACAACAACAGCGGCAGCAACAATAACAAGAAAGTGGTGAACAGCAGCATCAAGTACAAAGAGTGCCTGAAGAACCATGCAGCAGCCATGGGAGGGACTGCAACTGATGGGTGTGGTGAGTTCATGCCCAGTGGAGAAGAAGGCACCATTGAAGCTCTCACCTGCTCTGCCTGCAACTGCCACAGAAACTTCCACAGAAAAGAAATTGAAGGTGATCATGGCATGTCCTCATGGGATCTCAACAGCAACACTCGGGTTGGTACTGGTGGGAGGAAAGTCCTATTAGGCCATCCCAATGGGCACAAGAACATGAGTATACTAGCCCCTGATGCCTTGGGTTTCCACACAGCTGCTAATCCCACAGGAGGCTTCTTACCCTCAAGAACTGCACCACATCATCCTCACCACCACCCCCACCCCCACCATATGATAATGTCGTACAATAACAACATGGCCATTGGTGGGTTGATGGGGTCCCAGCTTCCTTCAGAATCTGATGAGCAAGAACAAGATCAAATTCATCATCATGGCCATGGTGGTGGGGTTAATGTGGCCAGCAGGGCACCAGTACAGCTTGTGAAGAAAAGGTTCAGGACAAAGTTTACTCAGGAACAGAAGGAGAAAATGTTCAACTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAAGAGGAGTCTGTTGTACAAAACTTCTGCCATGAGATTGGTGTCAAGAGAAGAGTTCTCAAGGTTTGGATGCACAACAATAAACACAATCTGGCTAAGAATAAGTCCCAACCCCCACCTAGTACTGCTGCTTAG

Protein Analysis

387

Amino Acids

42.35

Weight (kDa)

6.87

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 138 - 190 1.7e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca FvH4_5g27650
malus_domestica MD15G1443500.v1.1
prunus_persica Prupe.1G586000_v2.0.a1
pyrus_communis pycom08g21540
rosa_chinensis RchiOBHm_Chr7g0219261
rosa_laevigata RLG00000002301
rosa_multiflora Rmu_sc0009785.1_g000021
rosa_roxburghii Rroxscaffold_3G00240110
rosa_rugosa Rorug07G0183000
rosa_samantha Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana Rw7G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 145, 533
Acc36I ACCTGC 2 cut(s) 145, 533
AccB1I GGYRCC 2 cut(s) 506, 925
AccI GTMKAC 1 cut(s) 679
AciI CCGC 3 cut(s) 197, 279, 375
AclWI GGATC 3 cut(s) 25, 106, 606
AcoI YGGCCR 3 cut(s) 816, 892, 915
AcsI RAATTY 2 cut(s) 70, 879
AcuI CTGAAG 2 cut(s) 452, 834
AfaI GTAC 6 cut(s) 419, 625, 803, 933, 1047, 1153
AfiI CCNNNNNNNGG 4 cut(s) 292, 456, 728, 825
AgsI TTSAA 4 cut(s) 12, 515, 572, 994
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AloI GAACNNNNNNTCC 2 cut(s) 974, 1006
AluBI AGCT 4 cut(s) 518, 713, 844, 937
AluI AGCT 4 cut(s) 518, 713, 844, 937
AlwI GGATC 3 cut(s) 25, 106, 606
AlwNI CAGNNNCTG 1 cut(s) 857
Ama87I CYCGRG 1 cut(s) 615
AoxI GGCC 4 cut(s) 649, 816, 892, 915
ApeKI GCWGC 8 cut(s) 140, 194, 378, 408, 443, 446, 713, 1157
ApoI RAATTY 2 cut(s) 70, 879
Asp700I GAANNNNTTC 2 cut(s) 950, 989
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 261, 837
AsuHPI GGTGA 7 cut(s) 122, 154, 412, 491, 514, 587, 758
AsuNHI GCTAGC 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 2 cut(s) 261, 837
BaeGI GKGCMC 2 cut(s) 666, 928
BalI TGGCCA 3 cut(s) 818, 894, 917
BanI GGYRCC 2 cut(s) 506, 925
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 8 cut(s) 152, 206, 390, 420, 455, 458, 700, 1144
BccI CCATC 4 cut(s) 123, 464, 660, 826
BclI TGATCA 1 cut(s) 577
BfaI CTAG 4 cut(s) 282, 287, 683, 1149
BfmI CTRYAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 146
BfuAI ACCTGC 2 cut(s) 145, 533
BglI GCCNNNNNGGC 1 cut(s) 923
BmcAI AGTACT 1 cut(s) 1153
Bme18I GGWCC 2 cut(s) 261, 837
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 261, 837
BmiI GGNNCC 5 cut(s) 262, 508, 838, 839, 927
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 3 cut(s) 420, 682, 1089
BmtI GCTAGC 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 190
BpuEI CTTGAG 2 cut(s) 727, 1073
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 3 cut(s) 450, 696, 895
BsaXI ACNNNNNCTCC 2 cut(s) 974, 1004
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 456, 728, 825
Bse1I ACTGG 3 cut(s) 492, 631, 929
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 450, 696, 895
BseGI GGATG 4 cut(s) 325, 652, 760, 1104
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 4 cut(s) 292, 456, 728, 825
BseMII CTCAG 2 cut(s) 204, 983
BseNI ACTGG 3 cut(s) 492, 631, 929
BseSI GKGCMC 2 cut(s) 666, 928
BseXI GCAGC 8 cut(s) 152, 206, 390, 420, 455, 458, 700, 1144
BseYI CCCAGC 1 cut(s) 840
BsgI GTGCAG 1 cut(s) 735
BshFI GGCC 4 cut(s) 651, 818, 894, 917
BshNI GGYRCC 2 cut(s) 506, 925
BsiHKCI CYCGRG 1 cut(s) 615
BslFI GGGAC 3 cut(s) 472, 823, 1120
BslI CCNNNNNNNGG 4 cut(s) 292, 456, 728, 825
BsmFI GGGAC 3 cut(s) 472, 823, 1120
BsnI GGCC 4 cut(s) 651, 818, 894, 917
BsoBI CYCGRG 1 cut(s) 615
Bsp1286I GDGCHC 2 cut(s) 666, 928
Bsp1407I TGTACA 1 cut(s) 1045
Bsp143I GATC 6 cut(s) 30, 111, 289, 577, 598, 874
Bsp19I CCATGG 2 cut(s) 450, 895
BspACI CCGC 3 cut(s) 197, 279, 375
BspANI GGCC 4 cut(s) 651, 818, 894, 917
BspCNI CTCAG 2 cut(s) 203, 982
BspLI GGNNCC 5 cut(s) 262, 508, 838, 839, 927
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 2 cut(s) 145, 533
BspOI GCTAGC 1 cut(s) 285
BspPI GGATC 3 cut(s) 25, 106, 606
BspT107I GGYRCC 2 cut(s) 506, 925
BsrGI TGTACA 1 cut(s) 1045
BsrI ACTGG 3 cut(s) 492, 631, 929
BssECI CCNNGG 3 cut(s) 450, 696, 895
BssMI GATC 6 cut(s) 30, 111, 289, 577, 598, 874
BssNAI GTATAC 1 cut(s) 680
BssT1I CCWWGG 3 cut(s) 450, 696, 895
Bst1107I GTATAC 1 cut(s) 680
Bst6I CTCTTC 1 cut(s) 1075
BstAUI TGTACA 1 cut(s) 1045
BstC8I GCNNGC 3 cut(s) 283, 535, 919
BstDEI CTNAG 4 cut(s) 190, 969, 1125, 1161
BstDSI CCRYGG 2 cut(s) 450, 895
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 4 cut(s) 325, 652, 760, 1104
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 6 cut(s) 33, 114, 292, 580, 601, 877
BstMBI GATC 6 cut(s) 30, 111, 289, 577, 598, 874
BstMWI GCNNNNNNNGC 4 cut(s) 206, 534, 692, 923
BstNSI RCATGY 2 cut(s) 332, 589
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 2 cut(s) 666, 928
BstV1I GCAGC 8 cut(s) 152, 206, 390, 420, 455, 458, 700, 1144
BstX2I RGATCY 2 cut(s) 30, 598
BstXI CCANNNNNNTGG 3 cut(s) 659, 902, 1067
BstYI RGATCY 2 cut(s) 30, 598
BstZ17I GTATAC 1 cut(s) 680
BsuRI GGCC 4 cut(s) 651, 818, 894, 917
BtgI CCRYGG 2 cut(s) 450, 895
BtsCI GGATG 4 cut(s) 325, 652, 760, 1104
BtsIMutI CAGTG 1 cut(s) 499
BveI ACCTGC 2 cut(s) 145, 533
Cac8I GCNNGC 3 cut(s) 283, 535, 919
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 261, 837
Csp6I GTAC 6 cut(s) 418, 624, 802, 932, 1046, 1152
CviQI GTAC 6 cut(s) 418, 624, 802, 932, 1046, 1152
DdeI CTNAG 4 cut(s) 190, 969, 1125, 1161
DpnI GATC 6 cut(s) 32, 113, 291, 579, 600, 876
DpnII GATC 6 cut(s) 30, 111, 289, 577, 598, 874
EaeI YGGCCR 3 cut(s) 816, 892, 915
Eam1104I CTCTTC 1 cut(s) 1075
EarI CTCTTC 1 cut(s) 1075
Eco130I CCWWGG 3 cut(s) 450, 696, 895
Eco47I GGWCC 2 cut(s) 261, 837
Eco57I CTGAAG 2 cut(s) 452, 834
Eco88I CYCGRG 1 cut(s) 615
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoO109I RGGNCCY 2 cut(s) 261, 837
EcoT14I CCWWGG 3 cut(s) 450, 696, 895
ErhI CCWWGG 3 cut(s) 450, 696, 895
FaqI GGGAC 3 cut(s) 472, 823, 1120
FauNDI CATATG 1 cut(s) 789
FbaI TGATCA 1 cut(s) 577
FblI GTMKAC 1 cut(s) 679
FokI GGATG 4 cut(s) 332, 639, 747, 1111
FspBI CTAG 4 cut(s) 282, 287, 683, 1149
GlaI GCGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 844
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 4 cut(s) 651, 818, 894, 917
HhaI GCGC 1 cut(s) 145
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 3 cut(s) 854, 1021, 1037
HphI GGTGA 7 cut(s) 122, 154, 412, 491, 514, 587, 758
Hpy166II GTNNAC 4 cut(s) 92, 403, 680, 966
Hpy188I TCNGA 3 cut(s) 853, 859, 1026
Hpy188III TCNNGA 6 cut(s) 20, 293, 744, 955, 971, 1075
Hpy8I GTNNAC 4 cut(s) 92, 403, 680, 966
HpyAV CCTTC 5 cut(s) 17, 497, 566, 858, 973
HpyCH4V TGCA 7 cut(s) 140, 443, 464, 537, 752, 1001, 1102
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 534, 692, 923
HpyF3I CTNAG 4 cut(s) 190, 969, 1125, 1161
HspAI GCGC 1 cut(s) 143
KflI GGGWCCC 1 cut(s) 837
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 6 cut(s) 30, 111, 289, 577, 598, 874
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 8 cut(s) 152, 206, 390, 420, 455, 458, 700, 1144
LweI GCATC 3 cut(s) 420, 682, 1089
MaeI CTAG 4 cut(s) 282, 287, 683, 1149
MalI GATC 6 cut(s) 32, 113, 291, 579, 600, 876
MboI GATC 6 cut(s) 30, 111, 289, 577, 598, 874
MboII GAAGA 6 cut(s) 66, 445, 512, 955, 1030, 1092
MflI RGATCY 2 cut(s) 30, 598
MhlI GDGCHC 2 cut(s) 666, 928
MlsI TGGCCA 3 cut(s) 818, 894, 917
MluCI AATT 3 cut(s) 70, 567, 879
MluNI TGGCCA 3 cut(s) 818, 894, 917
MlyI GAGTC 1 cut(s) 1046
Mox20I TGGCCA 3 cut(s) 818, 894, 917
MroXI GAANNNNTTC 2 cut(s) 950, 989
MscI TGGCCA 3 cut(s) 818, 894, 917
MseI TTAA 2 cut(s) 249, 909
MslI CAYNNNNRTG 6 cut(s) 99, 342, 657, 888, 894, 900
Msp20I TGGCCA 3 cut(s) 818, 894, 917
MspA1I CMGCKG 3 cut(s) 197, 375, 713
MwoI GCNNNNNNNGC 4 cut(s) 206, 534, 692, 923
NcoI CCATGG 2 cut(s) 450, 895
NdeI CATATG 1 cut(s) 789
NdeII GATC 6 cut(s) 30, 111, 289, 577, 598, 874
NheI GCTAGC 1 cut(s) 281
NlaIV GGNNCC 5 cut(s) 262, 508, 838, 839, 927
NspI RCATGY 2 cut(s) 332, 589
PaqCI CACCTGC 2 cut(s) 145, 533
PdmI GAANNNNTTC 2 cut(s) 950, 989
PfeI GAWTC 2 cut(s) 854, 1021
PleI GAGTC 1 cut(s) 1045
PpsI GAGTC 1 cut(s) 1045
PpuMI RGGWCCY 2 cut(s) 261, 837
Psp5II RGGWCCY 2 cut(s) 261, 837
PspFI CCCAGC 1 cut(s) 840
PspN4I GGNNCC 5 cut(s) 262, 508, 838, 839, 927
PspPI GGNCC 2 cut(s) 261, 837
PspPPI RGGWCCY 2 cut(s) 261, 837
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 2 cut(s) 30, 598
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 6 cut(s) 419, 625, 803, 933, 1047, 1153
RsaNI GTAC 6 cut(s) 418, 624, 802, 932, 1046, 1152
RseI CAYNNNNRTG 6 cut(s) 99, 342, 657, 888, 894, 900
SaqAI TTAA 2 cut(s) 249, 909
Sau3AI GATC 6 cut(s) 30, 111, 289, 577, 598, 874
Sau96I GGNCC 2 cut(s) 261, 837
ScaI AGTACT 1 cut(s) 1153
SchI GAGTC 1 cut(s) 1046
SduI GDGCHC 2 cut(s) 666, 928
SfaNI GCATC 3 cut(s) 420, 682, 1089
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 2 cut(s) 261, 837
SmiMI CAYNNNNRTG 6 cut(s) 99, 342, 657, 888, 894, 900
SmlI CTYRAG 2 cut(s) 742, 1088
SmoI CTYRAG 2 cut(s) 742, 1088
Sse9I AATT 3 cut(s) 70, 567, 879
SsiI CCGC 3 cut(s) 197, 279, 375
SspMI CTAG 4 cut(s) 282, 287, 683, 1149
StyI CCWWGG 3 cut(s) 450, 696, 895
TasI AATT 3 cut(s) 70, 567, 879
TatI WGTACW 4 cut(s) 417, 931, 1045, 1151
TauI GCSGC 2 cut(s) 200, 378
TfiI GAWTC 2 cut(s) 854, 1021
Tru1I TTAA 2 cut(s) 249, 909
Tru9I TTAA 2 cut(s) 249, 909
TscAI CASTG 1 cut(s) 499
TseI GCWGC 8 cut(s) 140, 194, 378, 408, 443, 446, 713, 1157
TspDTI ATGAA 2 cut(s) 475, 872
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 261, 837
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 2 cut(s) 70, 879
XceI RCATGY 2 cut(s) 332, 589
XmiI GTMKAC 1 cut(s) 679
XmnI GAANNNNTTC 2 cut(s) 950, 989
XspI CTAG 4 cut(s) 282, 287, 683, 1149
ZrmI AGTACT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.