Rroxscaffold_3G00240110

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013026
Physical Location & Seq
Reverse (-)
31719221 .. 31721647
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240110.1

Sequence Viewer

Length: 1152 bp
ATGGAACTTTCGAGTCATCAAGAAGGGCAGATCCCAATCTCAATCCCAATCCCTATCCCAATCCCAATAAATTCTTCTTATGGTGCTGGTGGACATGGGCATGGACACATGATCCATCATCATCATCATCATGAGCCTGCAGCACCCCACACCCACACCCTCATCCACAACAACCACCTCATTACCTCTTCAGCAGCAGCAGTAGTAGCACCACCACCACCACCACAAATTCAAATCCCTGCCTCCATTAACAATAATGGGTCCTCCATTCCCAAAACCACTAGCCTAGATCAGGAGGAGGAGGAGGATGAGGAGGATGAGGAGCATGTCAATCATGTCAATGTGGCTTACAACAACAACAACAACAGCGGCAGCAACAATAACAAGAAAGTGGTGAACAGCAGCATCAAGTACAAAGAGTGCCTGAAGAACCATGCAGCAGCCATGGGAGGGACTGCAACTGATGGGTGTGGTGAGTTCATGCCCAGTGGCGAAGAAGGCACCATTGAAGCTCTCACCTGCTCTGCCTGCAACTGCCACAGAAACTTCCACAGAAAAGAAACTGAAGGTGATCATGGCATGTCCTCATGGGATCTCAACAGCAACACTCGGGTTCGTACTGGTGGGAGGAAAGTCCTATTAGGCCATCCCAATGGGCACAAGAACATGAGTATACTAGCCCCTGATGCCTTGGGTTTCCACACAGCTGCTAATCCCACAGGAGGCTTCTTACCCTCAAGAACTGCACCACATCATCCTCATCACCACCCCCACCAGATGATAATGTCTTACAATAACAACATGGCCATTGGTGGGTTGATGGGGTCCCAGCTTCCTTCAGAATCTGATGAGCAAGAACAAGATCAAATTCATCATCATGGCCATGGTGGTGGGGTTAATGTGACCAGCAGAGCACCAGTACAGGTTGTGAAGAAAAGGTTCAGGACAAAGTTTACTCAGGAACAGAAGGAGAAAATGTTCAACTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAAGAGGAGTCTGTTGTACAAAACTTCTGCCATGAGATTGGTGTCAAGAGAAGAGTTCTCAAGGTTTGGATGCACAACAATAAACACAATCTGGCTAAGAATAAGTCCCAACCCCCACCTAGTACTGCTGCTTAG

Protein Analysis

383

Amino Acids

42.03

Weight (kDa)

6.95

Isoelectric Point (pI)

56.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 136 - 188 2.2e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca FvH4_5g27650
malus_domestica MD15G1443500.v1.1
prunus_persica Prupe.1G586000_v2.0.a1
pyrus_communis pycom08g21540
rosa_chinensis RchiOBHm_Chr7g0219261
rosa_laevigata RLG00000002301
rosa_multiflora Rmu_sc0009785.1_g000021
rosa_roxburghii Rroxscaffold_3G00240110
rosa_rugosa Rorug07G0183000
rosa_samantha Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana Rw7G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 500
AccI GTMKAC 1 cut(s) 673
AciI CCGC 1 cut(s) 369
AclWI GGATC 3 cut(s) 25, 106, 600
AcoI YGGCCR 2 cut(s) 804, 880
AcsI RAATTY 3 cut(s) 70, 228, 867
AcuI CTGAAG 4 cut(s) 174, 446, 585, 822
AfaI GTAC 5 cut(s) 413, 619, 921, 1035, 1141
AfiI CCNNNNNNNGG 4 cut(s) 292, 450, 722, 813
AgsI TTSAA 3 cut(s) 233, 509, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AloI GAACNNNNNNTCC 2 cut(s) 962, 994
AluBI AGCT 3 cut(s) 512, 707, 832
AluI AGCT 3 cut(s) 512, 707, 832
Alw21I GWGCWC 1 cut(s) 916
AlwI GGATC 3 cut(s) 25, 106, 600
AlwNI CAGNNNCTG 1 cut(s) 845
Ama87I CYCGRG 1 cut(s) 609
AoxI GGCC 3 cut(s) 643, 804, 880
ApeKI GCWGC 9 cut(s) 140, 194, 197, 372, 402, 437, 440, 707, 1145
ApoI RAATTY 3 cut(s) 70, 228, 867
Asp700I GAANNNNTTC 2 cut(s) 938, 977
AspS9I GGNCC 2 cut(s) 261, 825
AsuHPI GGTGA 5 cut(s) 406, 485, 508, 581, 755
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 2 cut(s) 261, 825
BaeGI GKGCMC 1 cut(s) 660
BalI TGGCCA 2 cut(s) 806, 882
BanI GGYRCC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 916
BbvI GCAGC 9 cut(s) 152, 206, 209, 384, 414, 449, 452, 694, 1132
BccI CCATC 4 cut(s) 123, 458, 654, 814
BclI TGATCA 1 cut(s) 571
BfaI CTAG 4 cut(s) 282, 287, 677, 1137
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 527
BmcAI AGTACT 1 cut(s) 1141
Bme18I GGWCC 2 cut(s) 261, 825
BmeT110I CYCGRG 1 cut(s) 609
BmgT120I GGNCC 2 cut(s) 261, 825
BmiI GGNNCC 4 cut(s) 262, 502, 826, 827
BmrI ACTGGG 1 cut(s) 480
BmsI GCATC 3 cut(s) 414, 676, 1077
BmuI ACTGGG 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 721, 1061
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 3 cut(s) 444, 690, 883
BsaXI ACNNNNNCTCC 2 cut(s) 962, 992
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 450, 722, 813
Bse1I ACTGG 3 cut(s) 486, 625, 917
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 444, 690, 883
BseGI GGATG 6 cut(s) 162, 313, 322, 646, 754, 1092
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 4 cut(s) 292, 450, 722, 813
BseMII CTCAG 1 cut(s) 971
BseNI ACTGG 3 cut(s) 486, 625, 917
BseRI GAGGAG 6 cut(s) 311, 314, 317, 326, 335, 1037
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 9 cut(s) 152, 206, 209, 384, 414, 449, 452, 694, 1132
BseYI CCCAGC 1 cut(s) 828
BsgI GTGCAG 1 cut(s) 729
BshFI GGCC 3 cut(s) 645, 806, 882
BshNI GGYRCC 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 916
BsiHKCI CYCGRG 1 cut(s) 609
BslFI GGGAC 3 cut(s) 466, 811, 1108
BslI CCNNNNNNNGG 4 cut(s) 292, 450, 722, 813
BsmFI GGGAC 3 cut(s) 466, 811, 1108
BsnI GGCC 3 cut(s) 645, 806, 882
BsoBI CYCGRG 1 cut(s) 609
Bsp1286I GDGCHC 2 cut(s) 660, 916
Bsp1407I TGTACA 1 cut(s) 1033
Bsp143I GATC 6 cut(s) 30, 111, 289, 571, 592, 862
Bsp19I CCATGG 2 cut(s) 444, 883
BspACI CCGC 1 cut(s) 369
BspANI GGCC 3 cut(s) 645, 806, 882
BspCNI CTCAG 1 cut(s) 970
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 262, 502, 826, 827
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 527
BspPI GGATC 3 cut(s) 25, 106, 600
BspT107I GGYRCC 1 cut(s) 500
BsrGI TGTACA 1 cut(s) 1033
BsrI ACTGG 3 cut(s) 486, 625, 917
BssECI CCNNGG 3 cut(s) 444, 690, 883
BssMI GATC 6 cut(s) 30, 111, 289, 571, 592, 862
BssNAI GTATAC 1 cut(s) 674
BssT1I CCWWGG 3 cut(s) 444, 690, 883
Bst1107I GTATAC 1 cut(s) 674
Bst6I CTCTTC 2 cut(s) 193, 1063
BstAUI TGTACA 1 cut(s) 1033
BstC8I GCNNGC 2 cut(s) 138, 529
BstDEI CTNAG 3 cut(s) 957, 1113, 1149
BstDSI CCRYGG 2 cut(s) 444, 883
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 6 cut(s) 162, 313, 322, 646, 754, 1092
BstKTI GATC 6 cut(s) 33, 114, 292, 574, 595, 865
BstMBI GATC 6 cut(s) 30, 111, 289, 571, 592, 862
BstMWI GCNNNNNNNGC 4 cut(s) 206, 498, 528, 686
BstNSI RCATGY 2 cut(s) 329, 583
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 660
BstV1I GCAGC 9 cut(s) 152, 206, 209, 384, 414, 449, 452, 694, 1132
BstX2I RGATCY 2 cut(s) 30, 592
BstXI CCANNNNNNTGG 3 cut(s) 653, 890, 1055
BstYI RGATCY 2 cut(s) 30, 592
BstZ17I GTATAC 1 cut(s) 674
BsuRI GGCC 3 cut(s) 645, 806, 882
BtgI CCRYGG 2 cut(s) 444, 883
BtsCI GGATG 6 cut(s) 162, 313, 322, 646, 754, 1092
BtsIMutI CAGTG 1 cut(s) 493
BveI ACCTGC 1 cut(s) 527
Cac8I GCNNGC 2 cut(s) 138, 529
CaiI CAGNNNCTG 1 cut(s) 845
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 261, 825
Csp6I GTAC 5 cut(s) 412, 618, 920, 1034, 1140
CviQI GTAC 5 cut(s) 412, 618, 920, 1034, 1140
DdeI CTNAG 3 cut(s) 957, 1113, 1149
DpnI GATC 6 cut(s) 32, 113, 291, 573, 594, 864
DpnII GATC 6 cut(s) 30, 111, 289, 571, 592, 862
EaeI YGGCCR 2 cut(s) 804, 880
Eam1104I CTCTTC 2 cut(s) 193, 1063
EarI CTCTTC 2 cut(s) 193, 1063
Eco130I CCWWGG 3 cut(s) 444, 690, 883
Eco47I GGWCC 2 cut(s) 261, 825
Eco57I CTGAAG 4 cut(s) 174, 446, 585, 822
Eco88I CYCGRG 1 cut(s) 609
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoO109I RGGNCCY 2 cut(s) 261, 825
EcoT14I CCWWGG 3 cut(s) 444, 690, 883
ErhI CCWWGG 3 cut(s) 444, 690, 883
FaqI GGGAC 3 cut(s) 466, 811, 1108
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 1 cut(s) 673
FokI GGATG 6 cut(s) 149, 320, 329, 633, 741, 1099
FspBI CTAG 4 cut(s) 282, 287, 677, 1137
GsaI CCCAGC 1 cut(s) 832
HaeIII GGCC 3 cut(s) 645, 806, 882
HinfI GANTC 4 cut(s) 13, 842, 1009, 1025
HphI GGTGA 5 cut(s) 406, 485, 508, 581, 755
Hpy166II GTNNAC 4 cut(s) 92, 397, 674, 954
Hpy188I TCNGA 3 cut(s) 841, 847, 1014
Hpy188III TCNNGA 7 cut(s) 20, 131, 293, 738, 943, 959, 1063
Hpy8I GTNNAC 4 cut(s) 92, 397, 674, 954
HpyAV CCTTC 5 cut(s) 17, 491, 560, 846, 961
HpyCH4V TGCA 7 cut(s) 140, 437, 458, 531, 746, 989, 1090
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 498, 528, 686
HpyF3I CTNAG 3 cut(s) 957, 1113, 1149
KflI GGGWCCC 1 cut(s) 825
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 6 cut(s) 30, 111, 289, 571, 592, 862
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 9 cut(s) 152, 206, 209, 384, 414, 449, 452, 694, 1132
LweI GCATC 3 cut(s) 414, 676, 1077
MaeI CTAG 4 cut(s) 282, 287, 677, 1137
MaeIII GTNAC 1 cut(s) 901
MalI GATC 6 cut(s) 32, 113, 291, 573, 594, 864
MboI GATC 6 cut(s) 30, 111, 289, 571, 592, 862
MboII GAAGA 7 cut(s) 66, 180, 439, 506, 943, 1018, 1080
MflI RGATCY 2 cut(s) 30, 592
MhlI GDGCHC 2 cut(s) 660, 916
MlsI TGGCCA 2 cut(s) 806, 882
MluCI AATT 3 cut(s) 70, 228, 867
MluNI TGGCCA 2 cut(s) 806, 882
MlyI GAGTC 2 cut(s) 22, 1034
Mox20I TGGCCA 2 cut(s) 806, 882
MroXI GAANNNNTTC 2 cut(s) 938, 977
MscI TGGCCA 2 cut(s) 806, 882
MseI TTAA 2 cut(s) 249, 897
MslI CAYNNNNRTG 7 cut(s) 99, 129, 339, 651, 876, 882, 888
Msp20I TGGCCA 2 cut(s) 806, 882
MspA1I CMGCKG 2 cut(s) 369, 707
MwoI GCNNNNNNNGC 4 cut(s) 206, 498, 528, 686
NcoI CCATGG 2 cut(s) 444, 883
NdeII GATC 6 cut(s) 30, 111, 289, 571, 592, 862
NlaIV GGNNCC 4 cut(s) 262, 502, 826, 827
NmuCI GTSAC 1 cut(s) 901
NspI RCATGY 2 cut(s) 329, 583
PagI TCATGA 1 cut(s) 130
PaqCI CACCTGC 1 cut(s) 527
PdmI GAANNNNTTC 2 cut(s) 938, 977
PfeI GAWTC 2 cut(s) 842, 1009
PleI GAGTC 2 cut(s) 21, 1033
PpsI GAGTC 2 cut(s) 21, 1033
PpuMI RGGWCCY 2 cut(s) 261, 825
Psp5II RGGWCCY 2 cut(s) 261, 825
PspFI CCCAGC 1 cut(s) 828
PspN4I GGNNCC 4 cut(s) 262, 502, 826, 827
PspPI GGNCC 2 cut(s) 261, 825
PspPPI RGGWCCY 2 cut(s) 261, 825
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 2 cut(s) 30, 592
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 5 cut(s) 413, 619, 921, 1035, 1141
RsaNI GTAC 5 cut(s) 412, 618, 920, 1034, 1140
RseI CAYNNNNRTG 7 cut(s) 99, 129, 339, 651, 876, 882, 888
SaqAI TTAA 2 cut(s) 249, 897
Sau3AI GATC 6 cut(s) 30, 111, 289, 571, 592, 862
Sau96I GGNCC 2 cut(s) 261, 825
ScaI AGTACT 1 cut(s) 1141
SchI GAGTC 2 cut(s) 22, 1034
SduI GDGCHC 2 cut(s) 660, 916
SfaNI GCATC 3 cut(s) 414, 676, 1077
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 2 cut(s) 261, 825
SmiMI CAYNNNNRTG 7 cut(s) 99, 129, 339, 651, 876, 882, 888
SmlI CTYRAG 2 cut(s) 736, 1076
SmoI CTYRAG 2 cut(s) 736, 1076
Sse9I AATT 3 cut(s) 70, 228, 867
SsiI CCGC 1 cut(s) 369
SspMI CTAG 4 cut(s) 282, 287, 677, 1137
StyI CCWWGG 3 cut(s) 444, 690, 883
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 70, 228, 867
TatI WGTACW 4 cut(s) 411, 919, 1033, 1139
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 2 cut(s) 842, 1009
Tru1I TTAA 2 cut(s) 249, 897
Tru9I TTAA 2 cut(s) 249, 897
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 9 cut(s) 140, 194, 197, 372, 402, 437, 440, 707, 1145
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 2 cut(s) 469, 860
TspRI CASTG 1 cut(s) 493
VpaK11BI GGWCC 2 cut(s) 261, 825
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 3 cut(s) 70, 228, 867
XceI RCATGY 2 cut(s) 329, 583
XmiI GTMKAC 1 cut(s) 673
XmnI GAANNNNTTC 2 cut(s) 938, 977
XspI CTAG 4 cut(s) 282, 287, 677, 1137
ZrmI AGTACT 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.