Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0013026

Physical Location & Seq

Genomic Coordinates Reverse (-)

20991198 .. 20992304

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGATGGATCATCTTTCAAGTCAAGAAGGAGAGATCCCAATCACAATCCCAAGCCCAATCCCGATCCTAATAAATACGTCCTTTGGAAGTGGTGGGCATGGACACTTGATCCATCATCATCACCAGCAGCGCCCCCATGACCCTACATCAGCAGCAGCAGCAAGAGCACCAGTACCCCAGAACAACAACAAGCACTCCAATTTTCTTCCCTCCTCAGCAGTGGTGCCCCAAAATCAAATCCCCCCCAACACTAATGGCTCTATTCCCATGCCCCCAAGCCTGGATCATTCTCATGAGGAGGAGGTGGTGGAGGAGGTGGAGCATCATGTCAACAATGCAAATGCAAATGTTGTGCCCTACAAATACAGCACTTTTAATAATAAGAAAGTTGGGCACAATGGGGTGAGGTACAAGGAGTGCCTCAAGAACCATGCAGCAGCCATGGGAGGGACCGCCACGGATGGCTGTGGCGAATTCATGCCCAGTGGAGAAGAGGGTACCATTGAGGCCCTCAATTGCTCTGCCTGCAACTGCCACAGAAACTTCCACAGAAAAAAAGTTGAAGGTGAGCAGCAGCAGCTCTCCTCTTGGGATCATAATTTCCATCATACCATCAACAGGGCGGTTGGAATTGGGAGCAGGAAATTCTTATTAAATCATGGAGGAGGAGGAGGAGGAGGACATCACAAGAGTTTACTAGCACCACCCCAGTACCCCCACCAACCCCAGATGCTGATGCCTAACTATAACATGGGGATGGGGATGCTGGGGATGGTGGGGTCCATCCCTTCAGATCAATCTGATGAGCCGGAAGATCATCATCATCTTCATCACGGTGGTGGTGGTGCAGTGGGCAGCAGGCCACCAGTAGGACAGGTAGCAAAGAAAAGGTTCAGGACAAAGTTTACACAGGAGCAGAAGGAAAAAATGCTAAACTTTGCAGAGAAAGTAGGGTGGAAGATTCAGAAGCAGGAAGACTCATTTGTCCAAAACTTCTGCCAAGAGATTGGGGTCAAGAGAAGGGTTCTCAAGGTTTGGATGCACAACAACAAACACAATCTAGCCAACAAGATCAAACCACCACCCCCTTCCCCATCTGCCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

369

Amino Acids

40.48

Weight (kDa)

8.66

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	135 - 187	7.2e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca	FvH4_5g27650
malus_domestica	MD15G1443500.v1.1
prunus_persica	Prupe.1G586000_v2.0.a1
pyrus_communis	pycom08g21540
rosa_chinensis	RchiOBHm_Chr7g0219261
rosa_laevigata	RLG00000002301
rosa_multiflora	Rmu_sc0009785.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240110
rosa_rugosa	Rorug07G0183000
rosa_samantha	Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana	Rw7G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	983
Acc65I	GGTACC	1 cut(s)	497
AccB1I	GGYRCC	2 cut(s)	223, 497
AciI	CCGC	2 cut(s)	453, 623
AclWI	GGATC	6 cut(s)	15, 28, 58, 103, 291, 600
AcsI	RAATTY	2 cut(s)	473, 644
AcuI	CTGAAG	1 cut(s)	774
AfaI	GTAC	4 cut(s)	174, 410, 499, 713
AfiI	CCNNNNNNNGG	4 cut(s)	280, 447, 618, 869
AgsI	TTSAA	2 cut(s)	18, 563
AjnI	CCWGG	1 cut(s)	279
AleI	CACNNNNGTG	1 cut(s)	837
AluBI	AGCT	1 cut(s)	580
AluI	AGCT	1 cut(s)	580
Alw21I	GWGCWC	1 cut(s)	169
AlwI	GGATC	6 cut(s)	15, 28, 58, 103, 291, 600
AlwNI	CAGNNNCTG	1 cut(s)	733
AoxI	GGCC	2 cut(s)	507, 860
ApoI	RAATTY	2 cut(s)	473, 644
Asp700I	GAANNNNTTC	1 cut(s)	890
Asp718I	GGTACC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	3 cut(s)	450, 508, 780
AsuHPI	GGTGA	3 cut(s)	113, 415, 578
AvaII	GGWCC	2 cut(s)	450, 780
BaeGI	GKGCMC	3 cut(s)	228, 357, 396
BaeI	ACNNNNGTAYC	2 cut(s)	695, 728
BanI	GGYRCC	2 cut(s)	223, 497
BbsI	GAAGAC	1 cut(s)	981
Bbv12I	GWGCWC	1 cut(s)	169
BbvCI	CCTCAGC	1 cut(s)	214
BccI	CCATC	8 cut(s)	120, 455, 612, 620, 751, 766, 791, 1102
BciT130I	CCWGG	1 cut(s)	281
BfaI	CTAG	2 cut(s)	698, 1061
BfoI	RGCGCY	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	450, 780
BmgT120I	GGNCC	3 cut(s)	450, 508, 780
BmiI	GGNNCC	4 cut(s)	225, 451, 499, 781
BmrFI	CCNGG	1 cut(s)	281
BmrI	ACTGGG	2 cut(s)	477, 703
BmsI	GCATC	5 cut(s)	331, 720, 726, 753, 1029
BmuI	ACTGGG	2 cut(s)	477, 703
BpiI	GAAGAC	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	214
BpuEI	CTTGAG	2 cut(s)	407, 1013
BsaBI	GATNNNNATC	2 cut(s)	38, 819
BsaJI	CCNNGG	2 cut(s)	441, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 447, 618, 869
Bse1I	ACTGG	4 cut(s)	170, 483, 709, 866
Bse8I	GATNNNNATC	2 cut(s)	38, 819
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	441, 456
BseGI	GGATG	6 cut(s)	466, 762, 768, 777, 783, 1044
BseJI	GATNNNNATC	2 cut(s)	38, 819
BseLI	CCNNNNNNNGG	4 cut(s)	280, 447, 618, 869
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	4 cut(s)	170, 483, 709, 866
BseSI	GKGCMC	3 cut(s)	228, 357, 396
BseYI	CCCAGC	1 cut(s)	766
BsgI	GTGCAG	1 cut(s)	867
BshFI	GGCC	2 cut(s)	509, 862
BshNI	GGYRCC	2 cut(s)	223, 497
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	809
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	280, 447, 618, 869
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	509, 862
Bsp1286I	GDGCHC	4 cut(s)	169, 228, 357, 396
Bsp143I	GATC	9 cut(s)	7, 33, 63, 108, 283, 592, 793, 814, 1071
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	2 cut(s)	453, 623
BspANI	GGCC	2 cut(s)	509, 862
BspCNI	CTCAG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	4 cut(s)	225, 451, 499, 781
BspPI	GGATC	6 cut(s)	15, 28, 58, 103, 291, 600
BspT107I	GGYRCC	2 cut(s)	223, 497
BsrI	ACTGG	4 cut(s)	170, 483, 709, 866
BssECI	CCNNGG	2 cut(s)	441, 456
BssMI	GATC	9 cut(s)	7, 33, 63, 108, 283, 592, 793, 814, 1071
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	526, 860
BstDEI	CTNAG	1 cut(s)	214
BstDSI	CCRYGG	2 cut(s)	441, 456
BstF5I	GGATG	6 cut(s)	466, 762, 768, 777, 783, 1044
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	9 cut(s)	10, 36, 66, 111, 286, 595, 796, 817, 1074
BstMBI	GATC	9 cut(s)	7, 33, 63, 108, 283, 592, 793, 814, 1071
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 164, 525, 577
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSLI	GKGCMC	3 cut(s)	228, 357, 396
BstV2I	GAAGAC	1 cut(s)	981
BstX2I	RGATCY	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	509, 862
BtgI	CCRYGG	2 cut(s)	441, 456
BtsCI	GGATG	6 cut(s)	466, 762, 768, 777, 783, 1044
BtsI	GCAGTG	2 cut(s)	225, 855
BtsIMutI	CAGTG	3 cut(s)	225, 490, 855
Cac8I	GCNNGC	2 cut(s)	526, 860
CaiI	CAGNNNCTG	1 cut(s)	733
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	3 cut(s)	450, 508, 780
Csp6I	GTAC	4 cut(s)	173, 409, 498, 712
CviQI	GTAC	4 cut(s)	173, 409, 498, 712
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	9 cut(s)	9, 35, 65, 110, 285, 594, 795, 816, 1073
DpnII	GATC	9 cut(s)	7, 33, 63, 108, 283, 592, 793, 814, 1071
DrdI	GACNNNNNNGTC	1 cut(s)	983
DseDI	GACNNNNNNGTC	1 cut(s)	983
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	2 cut(s)	450, 780
Eco57I	CTGAAG	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaqI	GGGAC	1 cut(s)	463
FokI	GGATG	6 cut(s)	473, 769, 770, 775, 784, 1051
FspBI	CTAG	2 cut(s)	698, 1061
GlaI	GCGC	1 cut(s)	131
GsaI	CCCAGC	1 cut(s)	770
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	509, 862
HapII	CCGG	1 cut(s)	809
HhaI	GCGC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	2 cut(s)	961, 977
HpaII	CCGG	1 cut(s)	809
HphI	GGTGA	3 cut(s)	113, 415, 578
Hpy166II	GTNNAC	3 cut(s)	331, 695, 906
Hpy188I	TCNGA	3 cut(s)	793, 802, 966
Hpy188III	TCNNGA	6 cut(s)	23, 61, 293, 424, 895, 1015
Hpy8I	GTNNAC	3 cut(s)	331, 695, 906
HpyAV	CCTTC	6 cut(s)	20, 557, 798, 913, 1014, 1098
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	7 cut(s)	338, 344, 434, 528, 848, 941, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 164, 525, 577
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	77
HspAI	GCGC	1 cut(s)	130
KpnI	GGTACC	1 cut(s)	501
Kzo9I	GATC	9 cut(s)	7, 33, 63, 108, 283, 592, 793, 814, 1071
LmnI	GCTCC	3 cut(s)	319, 636, 913
LweI	GCATC	5 cut(s)	331, 720, 726, 753, 1029
MaeI	CTAG	2 cut(s)	698, 1061
MaeII	ACGT	1 cut(s)	77
MalI	GATC	9 cut(s)	9, 35, 65, 110, 285, 594, 795, 816, 1073
MboI	GATC	9 cut(s)	7, 33, 63, 108, 283, 592, 793, 814, 1071
MboII	GAAGA	6 cut(s)	197, 503, 818, 824, 970, 986
MfeI	CAATTG	1 cut(s)	514
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	4 cut(s)	169, 228, 357, 396
MluCI	AATT	6 cut(s)	199, 473, 514, 598, 630, 644
MlyI	GAGTC	1 cut(s)	971
MmeI	TCCRAC	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	3 cut(s)	375, 653, 1105
MslI	CAYNNNNRTG	4 cut(s)	291, 755, 834, 837
MspI	CCGG	1 cut(s)	809
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	158, 164, 525, 577
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	9 cut(s)	7, 33, 63, 108, 283, 592, 793, 814, 1071
NlaIV	GGNNCC	4 cut(s)	225, 451, 499, 781
OliI	CACNNNNGTG	1 cut(s)	837
PagI	TCATGA	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	1 cut(s)	961
PleI	GAGTC	1 cut(s)	971
PpsI	GAGTC	1 cut(s)	971
Psp6I	CCWGG	1 cut(s)	279
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	4 cut(s)	225, 451, 499, 781
PspPI	GGNCC	3 cut(s)	450, 508, 780
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	4 cut(s)	174, 410, 499, 713
RsaNI	GTAC	4 cut(s)	173, 409, 498, 712
RseI	CAYNNNNRTG	4 cut(s)	291, 755, 834, 837
SaqAI	TTAA	3 cut(s)	375, 653, 1105
Sau3AI	GATC	9 cut(s)	7, 33, 63, 108, 283, 592, 793, 814, 1071
Sau96I	GGNCC	3 cut(s)	450, 508, 780
SchI	GAGTC	1 cut(s)	971
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	4 cut(s)	169, 228, 357, 396
SetI	ASST	9 cut(s)	80, 306, 318, 410, 568, 582, 879, 893, 1035
SfaNI	GCATC	5 cut(s)	331, 720, 726, 753, 1029
SinI	GGWCC	2 cut(s)	450, 780
SmiMI	CAYNNNNRTG	4 cut(s)	291, 755, 834, 837
SmlI	CTYRAG	2 cut(s)	422, 1028
SmoI	CTYRAG	2 cut(s)	422, 1028
Sse9I	AATT	6 cut(s)	199, 473, 514, 598, 630, 644
SsiI	CCGC	2 cut(s)	453, 623
SspMI	CTAG	2 cut(s)	698, 1061
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	80
TasI	AATT	6 cut(s)	199, 473, 514, 598, 630, 644
TfiI	GAWTC	1 cut(s)	961
Tru1I	TTAA	3 cut(s)	375, 653, 1105
Tru9I	TTAA	3 cut(s)	375, 653, 1105
TscAI	CASTG	3 cut(s)	225, 490, 855
TspDTI	ATGAA	2 cut(s)	466, 818
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	3 cut(s)	225, 490, 855
VpaK11BI	GGWCC	2 cut(s)	450, 780
XapI	RAATTY	2 cut(s)	473, 644
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	2 cut(s)	698, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.