Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013026

Physical Location & Seq

Genomic Coordinates Forward (+)

18852239 .. 18854972

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAACTTTCAAGTCATCAAGAAGGGCAGATCCCAATCTCAATCCCAATCCCTATCCCAATCCCAATAAACACTTCTTATGGTGCTGGTGGGCATGGGCATGGACACATGATCCATCATCATCACCATCATGAGCCTGCAGCATCCCATTCCCACACCCTCATCCACAACAGCCACCTCATTACCTCCTCAGCACCACCAGTAGTTGCACCACCACCACCACAGAATCAAATCCCTGCCTCCATTAACAATAATGGATCCTCCATTCCCACAGCCACTAGCCCAGATCAGGAGGAGCAGGAGGAAGAGGATGAGGAGCATGTCAATCATGTGAATGTGGCATACAACCACAACCACAACAACAACAGCAACAATAACAAGAAAGTGGTGAACAGCAGCATCAAGTACAAAGAGTGCCTGAAGAACCATGCAGCAGCCATGGGAGGGACTGCAACAGATGGGTGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGCACCATTGAAGCTCTCAACTGCTCTGCCTGCAACTGCCACAGAAACTTCCACAGAAAAGAGATTGAAGGTGATCATGGAATGTCCTCATGGGATGTCAACAACAACAGTACTAGGGTGGGTACTGTTGGGAGGAAAGTCCTATTAGGCCATCCCAATGCGCACAATAACATGAGCATACTAGCAGCTGATGCCTTGGGTTTCCACACAGCTGCGAATCCCACAGGAGGCTTCTTACCCTCAAGAACTGCACCACATCATCCTCACCACCATCCCCACCAGATGATAATGTCTTACAATAACAACATGAGCATGGGTGGGTTGATGGGGACCCATCTCCCTTCAGAATCTGATGAGCAAGAACAAGATCAAATTCATCATCATGGCCATGGTGGTGGGGTTAATGTGGCCAGTAGGGCACCAGTACAGCTTGTGAAGAAAAGGTTCAGGACAAAGTTTACTCAGGAACAGAAGGAGAAAATGTTCAACTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGTCTGTTGTACAAAACTTCTGCCATGAGATTGGTGTCAAGAGAAGAGTTCTCAAGGTTTGGATGCACAACAATAAACACAATCTGGCCAAGAATAAGTCCCAACCCCCACCTAGTACTACTACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

384

Amino Acids

42.1

Weight (kDa)

6.88

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	134 - 186	3.5e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14440 AT1G14440 AT2G02540 AT2G02540
fragaria_vesca	FvH4_5g27650
malus_domestica	MD15G1443500.v1.1
prunus_persica	Prupe.1G586000_v2.0.a1
pyrus_communis	pycom08g21540
rosa_chinensis	RchiOBHm_Chr7g0219261
rosa_laevigata	RLG00000002301
rosa_multiflora	Rmu_sc0009785.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240110
rosa_rugosa	Rorug07G0183000
rosa_samantha	Rh7AG326800 Rh7BG316600 Rh7CG344100 Rh7DG322200
rosa_wichuraiana	Rw7G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	654
AccB1I	GGYRCC	2 cut(s)	494, 910
AclWI	GGATC	4 cut(s)	25, 106, 252, 265
AcoI	YGGCCR	3 cut(s)	877, 900, 1107
AcsI	RAATTY	1 cut(s)	864
AcuI	CTGAAG	2 cut(s)	440, 819
AfaI	GTAC	6 cut(s)	407, 604, 616, 918, 1032, 1138
AfiI	CCNNNNNNNGG	3 cut(s)	289, 444, 719
AgsI	TTSAA	4 cut(s)	12, 503, 560, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AloI	GAACNNNNNNTCC	2 cut(s)	959, 991
AluBI	AGCT	4 cut(s)	506, 680, 704, 922
AluI	AGCT	4 cut(s)	506, 680, 704, 922
AlwI	GGATC	4 cut(s)	25, 106, 252, 265
AlwNI	CAGNNNCTG	1 cut(s)	842
AoxI	GGCC	4 cut(s)	640, 877, 900, 1107
ApeKI	GCWGC	6 cut(s)	140, 396, 431, 434, 677, 704
ApoI	RAATTY	1 cut(s)	864
Asp700I	GAANNNNTTC	2 cut(s)	935, 974
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	822
AsuHPI	GGTGA	5 cut(s)	116, 400, 479, 575, 749
AvaII	GGWCC	1 cut(s)	822
BaeGI	GKGCMC	1 cut(s)	913
BalI	TGGCCA	3 cut(s)	879, 902, 1109
BamHI	GGATCC	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	494, 910
BbvCI	CCTCAGC	1 cut(s)	190
BbvI	GCAGC	6 cut(s)	152, 408, 443, 446, 689, 691
BccI	CCATC	8 cut(s)	123, 135, 452, 651, 771, 811, 834, 993
BclI	TGATCA	1 cut(s)	565
BfaI	CTAG	4 cut(s)	279, 606, 674, 1134
BfmI	CTRYAG	1 cut(s)	138
BglI	GCCNNNNNGGC	1 cut(s)	908
BisI	GCNGC	6 cut(s)	141, 397, 432, 435, 678, 705
BlsI	GCNGC	6 cut(s)	142, 398, 433, 436, 679, 706
BmcAI	AGTACT	2 cut(s)	604, 1138
Bme18I	GGWCC	1 cut(s)	822
BmgT120I	GGNCC	1 cut(s)	822
BmiI	GGNNCC	5 cut(s)	259, 496, 823, 824, 912
BmsI	GCATC	4 cut(s)	152, 408, 673, 1074
Bpu10I	CCTNAGC	1 cut(s)	190
BpuEI	CTTGAG	2 cut(s)	718, 1058
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	438, 687, 880
BsaXI	ACNNNNNCTCC	2 cut(s)	959, 989
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 444, 719
Bse1I	ACTGG	3 cut(s)	200, 903, 914
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	438, 687, 880
BseGI	GGATG	9 cut(s)	143, 162, 316, 592, 643, 751, 763, 1004, 1089
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	289, 444, 719
BseMII	CTCAG	2 cut(s)	204, 968
BseNI	ACTGG	3 cut(s)	200, 903, 914
BseRI	GAGGAG	4 cut(s)	178, 308, 329, 1034
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	6 cut(s)	152, 408, 443, 446, 689, 691
BsgI	GTGCAG	1 cut(s)	726
BshFI	GGCC	4 cut(s)	642, 879, 902, 1109
BshNI	GGYRCC	2 cut(s)	494, 910
BslFI	GGGAC	3 cut(s)	460, 835, 1105
BslI	CCNNNNNNNGG	3 cut(s)	289, 444, 719
BsmFI	GGGAC	3 cut(s)	460, 835, 1105
BsnI	GGCC	4 cut(s)	642, 879, 902, 1109
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp1407I	TGTACA	1 cut(s)	1030
Bsp143I	GATC	6 cut(s)	30, 111, 257, 286, 565, 859
Bsp19I	CCATGG	2 cut(s)	438, 880
BspANI	GGCC	4 cut(s)	642, 879, 902, 1109
BspCNI	CTCAG	2 cut(s)	203, 967
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	5 cut(s)	259, 496, 823, 824, 912
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	4 cut(s)	25, 106, 252, 265
BspT107I	GGYRCC	2 cut(s)	494, 910
BsrGI	TGTACA	1 cut(s)	1030
BsrI	ACTGG	3 cut(s)	200, 903, 914
BssECI	CCNNGG	3 cut(s)	438, 687, 880
BssMI	GATC	6 cut(s)	30, 111, 257, 286, 565, 859
BssT1I	CCWWGG	3 cut(s)	438, 687, 880
Bst4CI	ACNGT	2 cut(s)	602, 619
Bst6I	CTCTTC	2 cut(s)	300, 1060
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	1030
BstC8I	GCNNGC	2 cut(s)	138, 523
BstDEI	CTNAG	2 cut(s)	190, 954
BstDSI	CCRYGG	2 cut(s)	438, 880
BstF5I	GGATG	9 cut(s)	143, 162, 316, 592, 643, 751, 763, 1004, 1089
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	6 cut(s)	33, 114, 260, 289, 568, 862
BstMBI	GATC	6 cut(s)	30, 111, 257, 286, 565, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	522, 683, 908
BstNSI	RCATGY	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	913
BstV1I	GCAGC	6 cut(s)	152, 408, 443, 446, 689, 691
BstX2I	RGATCY	2 cut(s)	30, 257
BstXI	CCANNNNNNTGG	2 cut(s)	887, 1052
BstYI	RGATCY	2 cut(s)	30, 257
BsuRI	GGCC	4 cut(s)	642, 879, 902, 1109
BtgI	CCRYGG	2 cut(s)	438, 880
BtsCI	GGATG	9 cut(s)	143, 162, 316, 592, 643, 751, 763, 1004, 1089
Cac8I	GCNNGC	2 cut(s)	138, 523
CaiI	CAGNNNCTG	1 cut(s)	842
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	822
Csp6I	GTAC	6 cut(s)	406, 603, 615, 917, 1031, 1137
CviQI	GTAC	6 cut(s)	406, 603, 615, 917, 1031, 1137
DdeI	CTNAG	2 cut(s)	190, 954
DpnI	GATC	6 cut(s)	32, 113, 259, 288, 567, 861
DpnII	GATC	6 cut(s)	30, 111, 257, 286, 565, 859
EaeI	YGGCCR	3 cut(s)	877, 900, 1107
Eam1104I	CTCTTC	2 cut(s)	300, 1060
EarI	CTCTTC	2 cut(s)	300, 1060
Eco130I	CCWWGG	3 cut(s)	438, 687, 880
Eco47I	GGWCC	1 cut(s)	822
Eco57I	CTGAAG	2 cut(s)	440, 819
EcoO109I	RGGNCCY	1 cut(s)	822
EcoT14I	CCWWGG	3 cut(s)	438, 687, 880
ErhI	CCWWGG	3 cut(s)	438, 687, 880
FaqI	GGGAC	3 cut(s)	460, 835, 1105
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	6 cut(s)	141, 397, 432, 435, 678, 705
FokI	GGATG	9 cut(s)	130, 149, 323, 599, 630, 738, 750, 1011, 1096
Fsp4HI	GCNGC	6 cut(s)	141, 397, 432, 435, 678, 705
FspAI	RTGCGCAY	1 cut(s)	654
FspBI	CTAG	4 cut(s)	279, 606, 674, 1134
FspI	TGCGCA	1 cut(s)	654
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	6 cut(s)	141, 397, 432, 435, 678, 705
HaeIII	GGCC	4 cut(s)	642, 879, 902, 1109
HhaI	GCGC	1 cut(s)	655
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	5 cut(s)	226, 709, 839, 1006, 1022
HphI	GGTGA	5 cut(s)	116, 400, 479, 575, 749
Hpy166II	GTNNAC	3 cut(s)	391, 592, 951
Hpy188I	TCNGA	3 cut(s)	838, 844, 1011
Hpy188III	TCNNGA	7 cut(s)	20, 131, 290, 735, 940, 956, 1060
Hpy8I	GTNNAC	3 cut(s)	391, 592, 951
HpyAV	CCTTC	5 cut(s)	17, 485, 554, 843, 958
HpyCH4III	ACNGT	2 cut(s)	602, 619
HpyCH4V	TGCA	9 cut(s)	140, 209, 431, 452, 525, 743, 986, 1087, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	522, 683, 908
HpyF3I	CTNAG	2 cut(s)	190, 954
HspAI	GCGC	1 cut(s)	653
KflI	GGGWCCC	1 cut(s)	822
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	6 cut(s)	30, 111, 257, 286, 565, 859
LmnI	GCTCC	2 cut(s)	295, 316
Lsp1109I	GCAGC	6 cut(s)	152, 408, 443, 446, 689, 691
LweI	GCATC	4 cut(s)	152, 408, 673, 1074
MaeI	CTAG	4 cut(s)	279, 606, 674, 1134
MalI	GATC	6 cut(s)	32, 113, 259, 288, 567, 861
MboI	GATC	6 cut(s)	30, 111, 257, 286, 565, 859
MboII	GAAGA	6 cut(s)	317, 433, 500, 940, 1015, 1077
MflI	RGATCY	2 cut(s)	30, 257
MhlI	GDGCHC	1 cut(s)	913
MlsI	TGGCCA	3 cut(s)	879, 902, 1109
MluCI	AATT	1 cut(s)	864
MluNI	TGGCCA	3 cut(s)	879, 902, 1109
MlyI	GAGTC	1 cut(s)	1031
MmeI	TCCRAC	1 cut(s)	976
Mox20I	TGGCCA	3 cut(s)	879, 902, 1109
MroXI	GAANNNNTTC	2 cut(s)	935, 974
MscI	TGGCCA	3 cut(s)	879, 902, 1109
MseI	TTAA	2 cut(s)	246, 894
MslI	CAYNNNNRTG	8 cut(s)	99, 129, 333, 648, 803, 873, 879, 885
Msp20I	TGGCCA	3 cut(s)	879, 902, 1109
MspA1I	CMGCKG	2 cut(s)	680, 704
MwoI	GCNNNNNNNGC	3 cut(s)	522, 683, 908
NcoI	CCATGG	2 cut(s)	438, 880
NdeII	GATC	6 cut(s)	30, 111, 257, 286, 565, 859
NlaIV	GGNNCC	5 cut(s)	259, 496, 823, 824, 912
NsbI	TGCGCA	1 cut(s)	654
NspI	RCATGY	1 cut(s)	323
PagI	TCATGA	1 cut(s)	130
PdmI	GAANNNNTTC	2 cut(s)	935, 974
PfeI	GAWTC	4 cut(s)	226, 709, 839, 1006
PkrI	GCNGC	6 cut(s)	142, 398, 433, 436, 679, 706
PleI	GAGTC	1 cut(s)	1030
PpsI	GAGTC	1 cut(s)	1030
PpuMI	RGGWCCY	1 cut(s)	822
Psp5II	RGGWCCY	1 cut(s)	822
PspN4I	GGNNCC	5 cut(s)	259, 496, 823, 824, 912
PspPI	GGNCC	1 cut(s)	822
PspPPI	RGGWCCY	1 cut(s)	822
PstI	CTGCAG	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	842
PsuI	RGATCY	2 cut(s)	30, 257
PvuII	CAGCTG	2 cut(s)	680, 704
RsaI	GTAC	6 cut(s)	407, 604, 616, 918, 1032, 1138
RsaNI	GTAC	6 cut(s)	406, 603, 615, 917, 1031, 1137
RseI	CAYNNNNRTG	8 cut(s)	99, 129, 333, 648, 803, 873, 879, 885
SaqAI	TTAA	2 cut(s)	246, 894
SatI	GCNGC	6 cut(s)	141, 397, 432, 435, 678, 705
Sau3AI	GATC	6 cut(s)	30, 111, 257, 286, 565, 859
Sau96I	GGNCC	1 cut(s)	822
ScaI	AGTACT	2 cut(s)	604, 1138
SchI	GAGTC	1 cut(s)	1031
SduI	GDGCHC	1 cut(s)	913
SfaNI	GCATC	4 cut(s)	152, 408, 673, 1074
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	822
SmiMI	CAYNNNNRTG	8 cut(s)	99, 129, 333, 648, 803, 873, 879, 885
SmlI	CTYRAG	2 cut(s)	733, 1073
SmoI	CTYRAG	2 cut(s)	733, 1073
Sse9I	AATT	1 cut(s)	864
SspMI	CTAG	4 cut(s)	279, 606, 674, 1134
StyI	CCWWGG	3 cut(s)	438, 687, 880
TaaI	ACNGT	2 cut(s)	602, 619
TasI	AATT	1 cut(s)	864
TatI	WGTACW	5 cut(s)	405, 602, 916, 1030, 1136
TfiI	GAWTC	4 cut(s)	226, 709, 839, 1006
Tru1I	TTAA	2 cut(s)	246, 894
Tru9I	TTAA	2 cut(s)	246, 894
TseI	GCWGC	6 cut(s)	140, 396, 431, 434, 677, 704
TspDTI	ATGAA	2 cut(s)	463, 857
VpaK11BI	GGWCC	1 cut(s)	822
XapI	RAATTY	1 cut(s)	864
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	2 cut(s)	935, 974
XspI	CTAG	4 cut(s)	279, 606, 674, 1134
ZrmI	AGTACT	2 cut(s)	604, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.