AT1G14570

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4983489 .. 4987375
3887 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14570.1

Sequence Viewer

Length: 1407 bp
ATGGAAGGAATGTTGTCGTCCGGTGACCAACAGAGATTAGTCTCTTCTTTCCTTGAAATCGCCGTCGGACAGACCGCCGAAACTGCTCGACAGTTCTTACAGGCGACAAGCTGGAAACTTGAGGAAGCTATTCAGCTCTTTTACATTGGAAATGAAGGTGGTATGCTTCAGTCTGGTACACACACTCAGCCAGCGTCCAACGATGATGCGGCTGCACAGTCTTGGGGGGCGGCTACAGGCACAGGTAATGAAATGATACTGCCCAACGATGTCGATGAAGTCCGTGCTCCTTTACCTGTTGTGAGGGAGACTCTTTATGGTGAATCAATGTATTATGGGGCTATGAGGGTGGGTAACTCTCAGCCTGAACCAAATTCTTTGATTGCTTTCCGTAACTTCAGTGAAGAGCCAAAAAGCCCTGGAATTTGGGAACCAGATGAGGGTGATTCCTCAGCCTCTGCCTCAGCATCCGCATCTGCATCAGAGTCAGCATCCGCACCTCGGGACAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCACCTGATGTTCCAGGGCTCTTTTGAACAGGCAAAAACTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCACGGAATTCAGCTCTCATATGCTAAATCGAGATACTTGGGCGAATGATGCTGTTTCTCAGACTATCAAAGCCAACTTCATCTTCTGGCAGGTCTATGATGATACCACGGAAGGAAGAAAGGTTTGCACATACTACAAGCTCGAATCTATTCCCGTGGTGCTTGTAATTGATCCAACCACTGGTCAAAGAATGAGAATGTGGACCGGAATGGTTGACCCTGAGAATTTGCTAGAGGATTTAGTGCCGTTCATGGATGGTGGTCCTCGTGAACACTTTGCTTCTCTCTCAAAGAAGCGGCCAAGAGGCAGCTTCTCATTGACTCCTCATTCCAAACCCAAAGAGGATGTTGCAAAAGATGAAGAAGAAGAGGAACTGCAACGAGCATTAGCTGCTTCCTTGGAAGATAACAACATGAAAGAGTCTTCAGATGATCAATCAACAATAATACCTGAAGAAGTAGCAGTTGAAGCAGTTACATCCGCGGTCCTGCCAACATTCCCACCACTGCCGGAAGAACCAAAGGGAGGCGATCGCAGCCTACAATGCAGAGTTGGGATCCGTTTACCTAACGGACAAAGACTCCAGAGGAATTTCCTCAAAACAGACACAATTCAGCTTCTCTGGTCATTCTGCTATTCCCAGCTTGAGGAATCAGAGAGGAAGAAGCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAGACATTGGAGTATGAATCTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTCCATGATCTCTGCTACGTGGGAATGA

Protein Analysis

468

Amino Acids

51.81

Weight (kDa)

4.66

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 12 - 50 6.9e-11 UBA-like domain
Thioredoxin_7 PF13899 185 - 266 3.5e-13 Thioredoxin-like
UBX PF00789 389 - 442 5.6e-07 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 803
AccII CGCG 1 cut(s) 1106
AciI CCGC 8 cut(s) 75, 209, 230, 471, 495, 919, 1104, 1106
AclWI GGATC 3 cut(s) 788, 1174, 1187
AcoI YGGCCR 1 cut(s) 920
AcsI RAATTY 5 cut(s) 373, 423, 629, 847, 1213
AcuI CTGAAG 4 cut(s) 152, 382, 1032, 1095
AfaI GTAC 2 cut(s) 178, 524
AfiI CCNNNNNNNGG 5 cut(s) 440, 501, 803, 1148, 1270
AgsI TTSAA 4 cut(s) 56, 563, 1091, 1297
AjnI CCWGG 5 cut(s) 418, 510, 549, 588, 1315
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 2 cut(s) 46, 302
AlwI GGATC 3 cut(s) 788, 1174, 1187
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 2 cut(s) 513, 920
ApeKI GCWGC 4 cut(s) 212, 930, 1013, 1158
ApoI RAATTY 5 cut(s) 373, 423, 629, 847, 1213
AsiSI GCGATCGC 1 cut(s) 1156
Asp700I GAANNNNTTC 2 cut(s) 129, 771
AspS9I GGNCC 3 cut(s) 825, 884, 1108
AsuHPI GGTGA 5 cut(s) 35, 332, 455, 530, 1331
AvaI CYCGRG 1 cut(s) 501
AvaII GGWCC 3 cut(s) 825, 884, 1108
BamHI GGATCC 1 cut(s) 1179
BanII GRGCYC 1 cut(s) 557
BauI CACGAG 1 cut(s) 888
BbsI GAAGAC 2 cut(s) 576, 1038
Bbv12I GWGCWC 1 cut(s) 289
BbvCI CCTCAGC 2 cut(s) 451, 463
BbvI GCAGC 4 cut(s) 199, 942, 1000, 1170
BccI CCATC 1 cut(s) 872
BceAI ACGGC 2 cut(s) 47, 853
BciT130I CCWGG 5 cut(s) 420, 512, 551, 590, 1317
BclI TGATCA 1 cut(s) 1054
BcoDI GTCTC 2 cut(s) 46, 302
BfaI CTAG 1 cut(s) 854
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 7 cut(s) 210, 213, 231, 920, 931, 1014, 1159
BlsI GCNGC 7 cut(s) 211, 214, 232, 921, 932, 1015, 1160
Bme1390I CCNGG 5 cut(s) 420, 512, 551, 590, 1317
Bme18I GGWCC 3 cut(s) 825, 884, 1108
BmeT110I CYCGRG 1 cut(s) 501
BmgT120I GGNCC 3 cut(s) 825, 884, 1108
BmiI GGNNCC 2 cut(s) 432, 1181
BmrFI CCNGG 5 cut(s) 420, 512, 551, 590, 1317
BmsI GCATC 6 cut(s) 196, 476, 482, 488, 500, 661
BpiI GAAGAC 2 cut(s) 576, 1038
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 1 cut(s) 1190
Bpu10I CCTNAGC 2 cut(s) 451, 463
BpuEI CTTGAG 2 cut(s) 140, 1289
BsaAI YACGTR 1 cut(s) 1398
BsaWI WCCGGW 2 cut(s) 20, 827
BsaXI ACNNNNNCTCC 2 cut(s) 1188, 1218
Bsc4I CCNNNNNNNGG 5 cut(s) 440, 501, 803, 1148, 1270
Bse1I ACTGG 1 cut(s) 808
BseBI CCWGG 5 cut(s) 420, 512, 551, 590, 1317
BseGI GGATG 5 cut(s) 467, 491, 883, 973, 1100
BseLI CCNNNNNNNGG 5 cut(s) 440, 501, 803, 1148, 1270
BseMII CTCAG 6 cut(s) 200, 374, 465, 477, 695, 834
BseNI ACTGG 1 cut(s) 808
BseRI GAGGAG 1 cut(s) 936
BseXI GCAGC 4 cut(s) 199, 942, 1000, 1170
BseYI CCCAGC 1 cut(s) 1263
BsgI GTGCAG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 1106
Bsh1285I CGRYCG 1 cut(s) 1156
BshFI GGCC 2 cut(s) 515, 922
BsiEI CGRYCG 1 cut(s) 1156
BsiHKAI GWGCWC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 3 cut(s) 21, 828, 1133
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 5 cut(s) 440, 501, 803, 1148, 1270
BsmAI GTCTC 2 cut(s) 46, 302
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 2 cut(s) 515, 922
BsoBI CYCGRG 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 289, 557
Bsp143I GATC 5 cut(s) 793, 1054, 1153, 1179, 1386
BspACI CCGC 8 cut(s) 75, 209, 230, 471, 495, 919, 1104, 1106
BspANI GGCC 2 cut(s) 515, 922
BspCNI CTCAG 6 cut(s) 199, 373, 464, 476, 694, 835
BspFNI CGCG 1 cut(s) 1106
BspLI GGNNCC 2 cut(s) 432, 1181
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 3 cut(s) 788, 1174, 1187
BspQI GCTCTTC 1 cut(s) 399
BsrI ACTGG 1 cut(s) 808
BssMI GATC 5 cut(s) 793, 1054, 1153, 1179, 1386
BssSI CACGAG 1 cut(s) 888
BssT1I CCWWGG 2 cut(s) 1020, 1356
Bst2BI CACGAG 1 cut(s) 888
Bst2UI CCWGG 5 cut(s) 420, 512, 551, 590, 1317
Bst4CI ACNGT 3 cut(s) 93, 219, 527
Bst6I CTCTTC 3 cut(s) 49, 399, 984
BstAPI GCANNNNNTGC 1 cut(s) 1013
BstBAI YACGTR 1 cut(s) 1398
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 6 cut(s) 186, 360, 451, 463, 681, 843
BstDSI CCRYGG 4 cut(s) 624, 729, 777, 1104
BstEII GGTNACC 1 cut(s) 23
BstF5I GGATG 5 cut(s) 467, 491, 883, 973, 1100
BstFNI CGCG 1 cut(s) 1106
BstKTI GATC 5 cut(s) 796, 1057, 1156, 1182, 1389
BstMAI GTCTC 2 cut(s) 46, 302
BstMBI GATC 5 cut(s) 793, 1054, 1153, 1179, 1386
BstMCI CGRYCG 1 cut(s) 1156
BstMWI GCNNNNNNNGC 7 cut(s) 83, 671, 1013, 1091, 1158, 1167, 1297
BstNI CCWGG 5 cut(s) 420, 512, 551, 590, 1317
BstPI GGTNACC 1 cut(s) 23
BstSCI CCNGG 5 cut(s) 418, 510, 549, 588, 1315
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 1 cut(s) 1106
BstV1I GCAGC 4 cut(s) 199, 942, 1000, 1170
BstV2I GAAGAC 2 cut(s) 576, 1038
BstX2I RGATCY 1 cut(s) 1179
BstYI RGATCY 1 cut(s) 1179
BsuRI GGCC 2 cut(s) 515, 922
BtgI CCRYGG 4 cut(s) 624, 729, 777, 1104
BtsCI GGATG 5 cut(s) 467, 491, 883, 973, 1100
BtsI GCAGTG 1 cut(s) 1127
BtsIMutI CAGTG 3 cut(s) 406, 801, 1127
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 458
Cfr13I GGNCC 3 cut(s) 825, 884, 1108
Cfr42I CCGCGG 1 cut(s) 1107
CseI GACGC 1 cut(s) 183
Csp6I GTAC 2 cut(s) 177, 523
CviAII CATG 3 cut(s) 874, 1036, 1384
CviQI GTAC 2 cut(s) 177, 523
DdeI CTNAG 6 cut(s) 186, 360, 451, 463, 681, 843
DpnI GATC 5 cut(s) 795, 1056, 1155, 1181, 1388
DpnII GATC 5 cut(s) 793, 1054, 1153, 1179, 1386
EaeI YGGCCR 1 cut(s) 920
Eam1104I CTCTTC 3 cut(s) 49, 399, 984
EarI CTCTTC 3 cut(s) 49, 399, 984
Eco130I CCWWGG 2 cut(s) 1020, 1356
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 3 cut(s) 825, 884, 1108
Eco57I CTGAAG 4 cut(s) 152, 382, 1032, 1095
Eco88I CYCGRG 1 cut(s) 501
Eco91I GGTNACC 1 cut(s) 23
EcoO65I GGTNACC 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 629
EcoRII CCWGG 5 cut(s) 418, 510, 549, 588, 1315
EcoT14I CCWWGG 2 cut(s) 1020, 1356
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 2 cut(s) 1020, 1356
FaeI CATG 3 cut(s) 877, 1039, 1387
FaqI GGGAC 1 cut(s) 518
FatI CATG 3 cut(s) 873, 1035, 1383
FauNDI CATATG 1 cut(s) 642
FbaI TGATCA 1 cut(s) 1054
Fnu4HI GCNGC 7 cut(s) 210, 213, 231, 920, 931, 1014, 1159
FokI GGATG 5 cut(s) 454, 478, 890, 980, 1087
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 7 cut(s) 210, 213, 231, 920, 931, 1014, 1159
FspBI CTAG 1 cut(s) 854
GluI GCNGC 7 cut(s) 210, 213, 231, 920, 931, 1014, 1159
GsaI CCCAGC 1 cut(s) 1267
GsuI CTGGAG 1 cut(s) 1190
HaeIII GGCC 2 cut(s) 515, 922
HapII CCGG 3 cut(s) 21, 828, 1133
HgaI GACGC 1 cut(s) 183
Hin1II CATG 3 cut(s) 877, 1039, 1387
HincII GTYRAC 2 cut(s) 610, 838
HindII GTYRAC 2 cut(s) 610, 838
HpaII CCGG 3 cut(s) 21, 828, 1133
HphI GGTGA 5 cut(s) 35, 332, 455, 530, 1331
Hpy166II GTNNAC 6 cut(s) 179, 610, 825, 838, 893, 1187
Hpy188I TCNGA 5 cut(s) 68, 484, 684, 1051, 1279
Hpy188III TCNNGA 4 cut(s) 503, 653, 890, 1207
Hpy8I GTNNAC 6 cut(s) 179, 610, 825, 838, 893, 1187
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 149, 728
HpyCH4III ACNGT 3 cut(s) 93, 219, 527
HpyCH4IV ACGT 1 cut(s) 1397
HpyCH4V TGCA 6 cut(s) 215, 479, 750, 974, 1000, 1170
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 671, 1013, 1091, 1158, 1167, 1297
HpyF3I CTNAG 6 cut(s) 186, 360, 451, 463, 681, 843
HpySE526I ACGT 1 cut(s) 1397
Hsp92II CATG 3 cut(s) 877, 1039, 1387
Ksp22I TGATCA 1 cut(s) 1054
KspI CCGCGG 1 cut(s) 1107
Kzo9I GATC 5 cut(s) 793, 1054, 1153, 1179, 1386
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 2 cut(s) 292, 1360
Lsp1109I GCAGC 4 cut(s) 199, 942, 1000, 1170
LweI GCATC 6 cut(s) 196, 476, 482, 488, 500, 661
MaeI CTAG 1 cut(s) 854
MaeII ACGT 1 cut(s) 1397
MaeIII GTNAC 4 cut(s) 23, 353, 392, 1096
MalI GATC 5 cut(s) 795, 1056, 1155, 1181, 1388
MboI GATC 5 cut(s) 793, 1054, 1153, 1179, 1386
MflI RGATCY 1 cut(s) 1179
MhlI GDGCHC 2 cut(s) 289, 557
MluCI AATT 8 cut(s) 373, 423, 629, 789, 847, 1213, 1233, 1378
MlyI GAGTC 5 cut(s) 304, 494, 937, 1052, 1197
MmeI TCCRAC 3 cut(s) 46, 222, 821
MroXI GAANNNNTTC 2 cut(s) 129, 771
MseI TTAA 1 cut(s) 1352
MspA1I CMGCKG 1 cut(s) 1106
MspI CCGG 3 cut(s) 21, 828, 1133
MspR9I CCNGG 5 cut(s) 420, 512, 551, 590, 1317
MvaI CCWGG 5 cut(s) 420, 512, 551, 590, 1317
MvnI CGCG 1 cut(s) 1106
MwoI GCNNNNNNNGC 7 cut(s) 83, 671, 1013, 1091, 1158, 1167, 1297
NdeI CATATG 1 cut(s) 642
NdeII GATC 5 cut(s) 793, 1054, 1153, 1179, 1386
NlaIII CATG 3 cut(s) 877, 1039, 1387
NlaIV GGNNCC 2 cut(s) 432, 1181
NmuCI GTSAC 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 399
PdmI GAANNNNTTC 2 cut(s) 129, 771
PfeI GAWTC 7 cut(s) 323, 446, 767, 1274, 1312, 1322, 1343
PflMI CCANNNNNTGG 1 cut(s) 803
PkrI GCNGC 7 cut(s) 211, 214, 232, 921, 932, 1015, 1160
Ple19I CGATCG 1 cut(s) 1156
PleI GAGTC 5 cut(s) 304, 493, 937, 1051, 1197
PpsI GAGTC 5 cut(s) 304, 493, 937, 1051, 1197
Ppu21I YACGTR 1 cut(s) 1398
Psp6I CCWGG 5 cut(s) 418, 510, 549, 588, 1315
PspEI GGTNACC 1 cut(s) 23
PspFI CCCAGC 1 cut(s) 1263
PspGI CCWGG 5 cut(s) 418, 510, 549, 588, 1315
PspN4I GGNNCC 2 cut(s) 432, 1181
PspPI GGNCC 3 cut(s) 825, 884, 1108
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 1179
PvuI CGATCG 1 cut(s) 1156
RgaI GCGATCGC 1 cut(s) 1156
RsaI GTAC 2 cut(s) 178, 524
RsaNI GTAC 2 cut(s) 177, 523
SacII CCGCGG 1 cut(s) 1107
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 1 cut(s) 1352
SatI GCNGC 7 cut(s) 210, 213, 231, 920, 931, 1014, 1159
Sau3AI GATC 5 cut(s) 793, 1054, 1153, 1179, 1386
Sau96I GGNCC 3 cut(s) 825, 884, 1108
SchI GAGTC 5 cut(s) 304, 494, 937, 1052, 1197
ScrFI CCNGG 5 cut(s) 420, 512, 551, 590, 1317
SduI GDGCHC 2 cut(s) 289, 557
SfaAI GCGATCGC 1 cut(s) 1156
SfaNI GCATC 6 cut(s) 196, 476, 482, 488, 500, 661
SfcI CTRYAG 1 cut(s) 234
Sfr303I CCGCGG 1 cut(s) 1107
SgfI GCGATCGC 1 cut(s) 1156
SgrBI CCGCGG 1 cut(s) 1107
SinI GGWCC 3 cut(s) 825, 884, 1108
SmlI CTYRAG 2 cut(s) 119, 1268
SmoI CTYRAG 2 cut(s) 119, 1268
Sse9I AATT 8 cut(s) 373, 423, 629, 789, 847, 1213, 1233, 1378
SsiI CCGC 8 cut(s) 75, 209, 230, 471, 495, 919, 1104, 1106
SspMI CTAG 1 cut(s) 854
StyD4I CCNGG 5 cut(s) 418, 510, 549, 588, 1315
StyI CCWWGG 2 cut(s) 1020, 1356
TaaI ACNGT 3 cut(s) 93, 219, 527
TaiI ACGT 1 cut(s) 1400
TaqI TCGA 4 cut(s) 88, 273, 652, 765
TasI AATT 8 cut(s) 373, 423, 629, 789, 847, 1213, 1233, 1378
TauI GCSGC 3 cut(s) 212, 233, 922
TfiI GAWTC 7 cut(s) 323, 446, 767, 1274, 1312, 1322, 1343
Tru1I TTAA 1 cut(s) 1352
Tru9I TTAA 1 cut(s) 1352
TscAI CASTG 3 cut(s) 406, 808, 1134
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 4 cut(s) 212, 930, 1013, 1158
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 8 cut(s) 168, 264, 291, 691, 862, 996, 1052, 1356
TspGWI ACGGA 6 cut(s) 272, 380, 641, 746, 1172, 1209
TspRI CASTG 3 cut(s) 406, 808, 1134
Van91I CCANNNNNTGG 1 cut(s) 803
VpaK11BI GGWCC 3 cut(s) 825, 884, 1108
XapI RAATTY 5 cut(s) 373, 423, 629, 847, 1213
XmnI GAANNNNTTC 2 cut(s) 129, 771
XspI CTAG 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.