UBX domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14570 AT1G14570 AT1G14570 AT1G14570 |
| fragaria_vesca | FvH4_4g36080 FvH4_4g36080 FvH4_4g36080 FvH4_4g36080 |
| malus_domestica | MD13G1012500.v1.1 MD16G1009200.v1.1 |
| prunus_persica | Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1 |
| pyrus_communis | pycom13g01000 pycom16g00890 |
| rosa_chinensis | RchiOBHm_Chr4g0445701 |
| rosa_laevigata | RLG00000005715 |
| rosa_multiflora | Rmu_sc0000961.1_g000019 Rmu_sc0002957.1_g000001 Rmu_sc0003637.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00386190 |
| rosa_rugosa | Rorug03G0328200 Rorug04G0365000 |
| rosa_samantha | Rh4AG425900 Rh4CG452900 Rh4DG434100 |
| rosa_wichuraiana | Rw4G036480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 703 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 803 |
| AccII | CGCG | 1 cut(s) | 1106 |
| AciI | CCGC | 8 cut(s) | 75, 209, 230, 471, 495, 919, 1104, 1106 |
| AclWI | GGATC | 3 cut(s) | 788, 1174, 1187 |
| AcoI | YGGCCR | 1 cut(s) | 920 |
| AcsI | RAATTY | 5 cut(s) | 373, 423, 629, 847, 1213 |
| AcuI | CTGAAG | 4 cut(s) | 152, 382, 1032, 1095 |
| AfaI | GTAC | 2 cut(s) | 178, 524 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 440, 501, 803, 1148, 1270 |
| AgsI | TTSAA | 4 cut(s) | 56, 563, 1091, 1297 |
| AjnI | CCWGG | 5 cut(s) | 418, 510, 549, 588, 1315 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 689, 721 |
| Alw21I | GWGCWC | 1 cut(s) | 289 |
| Alw26I | GTCTC | 2 cut(s) | 46, 302 |
| AlwI | GGATC | 3 cut(s) | 788, 1174, 1187 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 458 |
| Ama87I | CYCGRG | 1 cut(s) | 501 |
| AoxI | GGCC | 2 cut(s) | 513, 920 |
| ApeKI | GCWGC | 4 cut(s) | 212, 930, 1013, 1158 |
| ApoI | RAATTY | 5 cut(s) | 373, 423, 629, 847, 1213 |
| AsiSI | GCGATCGC | 1 cut(s) | 1156 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 129, 771 |
| AspS9I | GGNCC | 3 cut(s) | 825, 884, 1108 |
| AsuHPI | GGTGA | 5 cut(s) | 35, 332, 455, 530, 1331 |
| AvaI | CYCGRG | 1 cut(s) | 501 |
| AvaII | GGWCC | 3 cut(s) | 825, 884, 1108 |
| BamHI | GGATCC | 1 cut(s) | 1179 |
| BanII | GRGCYC | 1 cut(s) | 557 |
| BauI | CACGAG | 1 cut(s) | 888 |
| BbsI | GAAGAC | 2 cut(s) | 576, 1038 |
| Bbv12I | GWGCWC | 1 cut(s) | 289 |
| BbvCI | CCTCAGC | 2 cut(s) | 451, 463 |
| BbvI | GCAGC | 4 cut(s) | 199, 942, 1000, 1170 |
| BccI | CCATC | 1 cut(s) | 872 |
| BceAI | ACGGC | 2 cut(s) | 47, 853 |
| BciT130I | CCWGG | 5 cut(s) | 420, 512, 551, 590, 1317 |
| BclI | TGATCA | 1 cut(s) | 1054 |
| BcoDI | GTCTC | 2 cut(s) | 46, 302 |
| BfaI | CTAG | 1 cut(s) | 854 |
| BfmI | CTRYAG | 1 cut(s) | 234 |
| BfuAI | ACCTGC | 1 cut(s) | 703 |
| BisI | GCNGC | 7 cut(s) | 210, 213, 231, 920, 931, 1014, 1159 |
| BlsI | GCNGC | 7 cut(s) | 211, 214, 232, 921, 932, 1015, 1160 |
| Bme1390I | CCNGG | 5 cut(s) | 420, 512, 551, 590, 1317 |
| Bme18I | GGWCC | 3 cut(s) | 825, 884, 1108 |
| BmeT110I | CYCGRG | 1 cut(s) | 501 |
| BmgT120I | GGNCC | 3 cut(s) | 825, 884, 1108 |
| BmiI | GGNNCC | 2 cut(s) | 432, 1181 |
| BmrFI | CCNGG | 5 cut(s) | 420, 512, 551, 590, 1317 |
| BmsI | GCATC | 6 cut(s) | 196, 476, 482, 488, 500, 661 |
| BpiI | GAAGAC | 2 cut(s) | 576, 1038 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 295, 327 |
| BpmI | CTGGAG | 1 cut(s) | 1190 |
| Bpu10I | CCTNAGC | 2 cut(s) | 451, 463 |
| BpuEI | CTTGAG | 2 cut(s) | 140, 1289 |
| BsaAI | YACGTR | 1 cut(s) | 1398 |
| BsaWI | WCCGGW | 2 cut(s) | 20, 827 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1188, 1218 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 440, 501, 803, 1148, 1270 |
| Bse1I | ACTGG | 1 cut(s) | 808 |
| BseBI | CCWGG | 5 cut(s) | 420, 512, 551, 590, 1317 |
| BseGI | GGATG | 5 cut(s) | 467, 491, 883, 973, 1100 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 440, 501, 803, 1148, 1270 |
| BseMII | CTCAG | 6 cut(s) | 200, 374, 465, 477, 695, 834 |
| BseNI | ACTGG | 1 cut(s) | 808 |
| BseRI | GAGGAG | 1 cut(s) | 936 |
| BseXI | GCAGC | 4 cut(s) | 199, 942, 1000, 1170 |
| BseYI | CCCAGC | 1 cut(s) | 1263 |
| BsgI | GTGCAG | 1 cut(s) | 198 |
| Bsh1236I | CGCG | 1 cut(s) | 1106 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1156 |
| BshFI | GGCC | 2 cut(s) | 515, 922 |
| BsiEI | CGRYCG | 1 cut(s) | 1156 |
| BsiHKAI | GWGCWC | 1 cut(s) | 289 |
| BsiHKCI | CYCGRG | 1 cut(s) | 501 |
| BsiSI | CCGG | 3 cut(s) | 21, 828, 1133 |
| BslFI | GGGAC | 1 cut(s) | 518 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 440, 501, 803, 1148, 1270 |
| BsmAI | GTCTC | 2 cut(s) | 46, 302 |
| BsmFI | GGGAC | 1 cut(s) | 518 |
| BsnI | GGCC | 2 cut(s) | 515, 922 |
| BsoBI | CYCGRG | 1 cut(s) | 501 |
| Bsp1286I | GDGCHC | 2 cut(s) | 289, 557 |
| Bsp143I | GATC | 5 cut(s) | 793, 1054, 1153, 1179, 1386 |
| BspACI | CCGC | 8 cut(s) | 75, 209, 230, 471, 495, 919, 1104, 1106 |
| BspANI | GGCC | 2 cut(s) | 515, 922 |
| BspCNI | CTCAG | 6 cut(s) | 199, 373, 464, 476, 694, 835 |
| BspFNI | CGCG | 1 cut(s) | 1106 |
| BspLI | GGNNCC | 2 cut(s) | 432, 1181 |
| BspMI | ACCTGC | 1 cut(s) | 703 |
| BspPI | GGATC | 3 cut(s) | 788, 1174, 1187 |
| BspQI | GCTCTTC | 1 cut(s) | 399 |
| BsrI | ACTGG | 1 cut(s) | 808 |
| BssMI | GATC | 5 cut(s) | 793, 1054, 1153, 1179, 1386 |
| BssSI | CACGAG | 1 cut(s) | 888 |
| BssT1I | CCWWGG | 2 cut(s) | 1020, 1356 |
| Bst2BI | CACGAG | 1 cut(s) | 888 |
| Bst2UI | CCWGG | 5 cut(s) | 420, 512, 551, 590, 1317 |
| Bst4CI | ACNGT | 3 cut(s) | 93, 219, 527 |
| Bst6I | CTCTTC | 3 cut(s) | 49, 399, 984 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1013 |
| BstBAI | YACGTR | 1 cut(s) | 1398 |
| BstC8I | GCNNGC | 1 cut(s) | 192 |
| BstDEI | CTNAG | 6 cut(s) | 186, 360, 451, 463, 681, 843 |
| BstDSI | CCRYGG | 4 cut(s) | 624, 729, 777, 1104 |
| BstEII | GGTNACC | 1 cut(s) | 23 |
| BstF5I | GGATG | 5 cut(s) | 467, 491, 883, 973, 1100 |
| BstFNI | CGCG | 1 cut(s) | 1106 |
| BstKTI | GATC | 5 cut(s) | 796, 1057, 1156, 1182, 1389 |
| BstMAI | GTCTC | 2 cut(s) | 46, 302 |
| BstMBI | GATC | 5 cut(s) | 793, 1054, 1153, 1179, 1386 |
| BstMCI | CGRYCG | 1 cut(s) | 1156 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 83, 671, 1013, 1091, 1158, 1167, 1297 |
| BstNI | CCWGG | 5 cut(s) | 420, 512, 551, 590, 1317 |
| BstPI | GGTNACC | 1 cut(s) | 23 |
| BstSCI | CCNGG | 5 cut(s) | 418, 510, 549, 588, 1315 |
| BstSFI | CTRYAG | 1 cut(s) | 234 |
| BstUI | CGCG | 1 cut(s) | 1106 |
| BstV1I | GCAGC | 4 cut(s) | 199, 942, 1000, 1170 |
| BstV2I | GAAGAC | 2 cut(s) | 576, 1038 |
| BstX2I | RGATCY | 1 cut(s) | 1179 |
| BstYI | RGATCY | 1 cut(s) | 1179 |
| BsuRI | GGCC | 2 cut(s) | 515, 922 |
| BtgI | CCRYGG | 4 cut(s) | 624, 729, 777, 1104 |
| BtsCI | GGATG | 5 cut(s) | 467, 491, 883, 973, 1100 |
| BtsI | GCAGTG | 1 cut(s) | 1127 |
| BtsIMutI | CAGTG | 3 cut(s) | 406, 801, 1127 |
| BveI | ACCTGC | 1 cut(s) | 703 |
| Cac8I | GCNNGC | 1 cut(s) | 192 |
| CaiI | CAGNNNCTG | 1 cut(s) | 458 |
| Cfr13I | GGNCC | 3 cut(s) | 825, 884, 1108 |
| Cfr42I | CCGCGG | 1 cut(s) | 1107 |
| CseI | GACGC | 1 cut(s) | 183 |
| Csp6I | GTAC | 2 cut(s) | 177, 523 |
| CviAII | CATG | 3 cut(s) | 874, 1036, 1384 |
| CviQI | GTAC | 2 cut(s) | 177, 523 |
| DdeI | CTNAG | 6 cut(s) | 186, 360, 451, 463, 681, 843 |
| DpnI | GATC | 5 cut(s) | 795, 1056, 1155, 1181, 1388 |
| DpnII | GATC | 5 cut(s) | 793, 1054, 1153, 1179, 1386 |
| EaeI | YGGCCR | 1 cut(s) | 920 |
| Eam1104I | CTCTTC | 3 cut(s) | 49, 399, 984 |
| EarI | CTCTTC | 3 cut(s) | 49, 399, 984 |
| Eco130I | CCWWGG | 2 cut(s) | 1020, 1356 |
| Eco24I | GRGCYC | 1 cut(s) | 557 |
| Eco47I | GGWCC | 3 cut(s) | 825, 884, 1108 |
| Eco57I | CTGAAG | 4 cut(s) | 152, 382, 1032, 1095 |
| Eco88I | CYCGRG | 1 cut(s) | 501 |
| Eco91I | GGTNACC | 1 cut(s) | 23 |
| EcoO65I | GGTNACC | 1 cut(s) | 23 |
| EcoRI | GAATTC | 1 cut(s) | 629 |
| EcoRII | CCWGG | 5 cut(s) | 418, 510, 549, 588, 1315 |
| EcoT14I | CCWWGG | 2 cut(s) | 1020, 1356 |
| EcoT38I | GRGCYC | 1 cut(s) | 557 |
| ErhI | CCWWGG | 2 cut(s) | 1020, 1356 |
| FaeI | CATG | 3 cut(s) | 877, 1039, 1387 |
| FaqI | GGGAC | 1 cut(s) | 518 |
| FatI | CATG | 3 cut(s) | 873, 1035, 1383 |
| FauNDI | CATATG | 1 cut(s) | 642 |
| FbaI | TGATCA | 1 cut(s) | 1054 |
| Fnu4HI | GCNGC | 7 cut(s) | 210, 213, 231, 920, 931, 1014, 1159 |
| FokI | GGATG | 5 cut(s) | 454, 478, 890, 980, 1087 |
| FriOI | GRGCYC | 1 cut(s) | 557 |
| Fsp4HI | GCNGC | 7 cut(s) | 210, 213, 231, 920, 931, 1014, 1159 |
| FspBI | CTAG | 1 cut(s) | 854 |
| GluI | GCNGC | 7 cut(s) | 210, 213, 231, 920, 931, 1014, 1159 |
| GsaI | CCCAGC | 1 cut(s) | 1267 |
| GsuI | CTGGAG | 1 cut(s) | 1190 |
| HaeIII | GGCC | 2 cut(s) | 515, 922 |
| HapII | CCGG | 3 cut(s) | 21, 828, 1133 |
| HgaI | GACGC | 1 cut(s) | 183 |
| Hin1II | CATG | 3 cut(s) | 877, 1039, 1387 |
| HincII | GTYRAC | 2 cut(s) | 610, 838 |
| HindII | GTYRAC | 2 cut(s) | 610, 838 |
| HpaII | CCGG | 3 cut(s) | 21, 828, 1133 |
| HphI | GGTGA | 5 cut(s) | 35, 332, 455, 530, 1331 |
| Hpy166II | GTNNAC | 6 cut(s) | 179, 610, 825, 838, 893, 1187 |
| Hpy188I | TCNGA | 5 cut(s) | 68, 484, 684, 1051, 1279 |
| Hpy188III | TCNNGA | 4 cut(s) | 503, 653, 890, 1207 |
| Hpy8I | GTNNAC | 6 cut(s) | 179, 610, 825, 838, 893, 1187 |
| Hpy99I | CGWCG | 1 cut(s) | 68 |
| HpyAV | CCTTC | 2 cut(s) | 149, 728 |
| HpyCH4III | ACNGT | 3 cut(s) | 93, 219, 527 |
| HpyCH4IV | ACGT | 1 cut(s) | 1397 |
| HpyCH4V | TGCA | 6 cut(s) | 215, 479, 750, 974, 1000, 1170 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 83, 671, 1013, 1091, 1158, 1167, 1297 |
| HpyF3I | CTNAG | 6 cut(s) | 186, 360, 451, 463, 681, 843 |
| HpySE526I | ACGT | 1 cut(s) | 1397 |
| Hsp92II | CATG | 3 cut(s) | 877, 1039, 1387 |
| Ksp22I | TGATCA | 1 cut(s) | 1054 |
| KspI | CCGCGG | 1 cut(s) | 1107 |
| Kzo9I | GATC | 5 cut(s) | 793, 1054, 1153, 1179, 1386 |
| LguI | GCTCTTC | 1 cut(s) | 399 |
| LmnI | GCTCC | 2 cut(s) | 292, 1360 |
| Lsp1109I | GCAGC | 4 cut(s) | 199, 942, 1000, 1170 |
| LweI | GCATC | 6 cut(s) | 196, 476, 482, 488, 500, 661 |
| MaeI | CTAG | 1 cut(s) | 854 |
| MaeII | ACGT | 1 cut(s) | 1397 |
| MaeIII | GTNAC | 4 cut(s) | 23, 353, 392, 1096 |
| MalI | GATC | 5 cut(s) | 795, 1056, 1155, 1181, 1388 |
| MboI | GATC | 5 cut(s) | 793, 1054, 1153, 1179, 1386 |
| MflI | RGATCY | 1 cut(s) | 1179 |
| MhlI | GDGCHC | 2 cut(s) | 289, 557 |
| MluCI | AATT | 8 cut(s) | 373, 423, 629, 789, 847, 1213, 1233, 1378 |
| MlyI | GAGTC | 5 cut(s) | 304, 494, 937, 1052, 1197 |
| MmeI | TCCRAC | 3 cut(s) | 46, 222, 821 |
| MroXI | GAANNNNTTC | 2 cut(s) | 129, 771 |
| MseI | TTAA | 1 cut(s) | 1352 |
| MspA1I | CMGCKG | 1 cut(s) | 1106 |
| MspI | CCGG | 3 cut(s) | 21, 828, 1133 |
| MspR9I | CCNGG | 5 cut(s) | 420, 512, 551, 590, 1317 |
| MvaI | CCWGG | 5 cut(s) | 420, 512, 551, 590, 1317 |
| MvnI | CGCG | 1 cut(s) | 1106 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 83, 671, 1013, 1091, 1158, 1167, 1297 |
| NdeI | CATATG | 1 cut(s) | 642 |
| NdeII | GATC | 5 cut(s) | 793, 1054, 1153, 1179, 1386 |
| NlaIII | CATG | 3 cut(s) | 877, 1039, 1387 |
| NlaIV | GGNNCC | 2 cut(s) | 432, 1181 |
| NmuCI | GTSAC | 1 cut(s) | 23 |
| PciSI | GCTCTTC | 1 cut(s) | 399 |
| PdmI | GAANNNNTTC | 2 cut(s) | 129, 771 |
| PfeI | GAWTC | 7 cut(s) | 323, 446, 767, 1274, 1312, 1322, 1343 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 803 |
| PkrI | GCNGC | 7 cut(s) | 211, 214, 232, 921, 932, 1015, 1160 |
| Ple19I | CGATCG | 1 cut(s) | 1156 |
| PleI | GAGTC | 5 cut(s) | 304, 493, 937, 1051, 1197 |
| PpsI | GAGTC | 5 cut(s) | 304, 493, 937, 1051, 1197 |
| Ppu21I | YACGTR | 1 cut(s) | 1398 |
| Psp6I | CCWGG | 5 cut(s) | 418, 510, 549, 588, 1315 |
| PspEI | GGTNACC | 1 cut(s) | 23 |
| PspFI | CCCAGC | 1 cut(s) | 1263 |
| PspGI | CCWGG | 5 cut(s) | 418, 510, 549, 588, 1315 |
| PspN4I | GGNNCC | 2 cut(s) | 432, 1181 |
| PspPI | GGNCC | 3 cut(s) | 825, 884, 1108 |
| PstNI | CAGNNNCTG | 1 cut(s) | 458 |
| PsuI | RGATCY | 1 cut(s) | 1179 |
| PvuI | CGATCG | 1 cut(s) | 1156 |
| RgaI | GCGATCGC | 1 cut(s) | 1156 |
| RsaI | GTAC | 2 cut(s) | 178, 524 |
| RsaNI | GTAC | 2 cut(s) | 177, 523 |
| SacII | CCGCGG | 1 cut(s) | 1107 |
| SapI | GCTCTTC | 1 cut(s) | 399 |
| SaqAI | TTAA | 1 cut(s) | 1352 |
| SatI | GCNGC | 7 cut(s) | 210, 213, 231, 920, 931, 1014, 1159 |
| Sau3AI | GATC | 5 cut(s) | 793, 1054, 1153, 1179, 1386 |
| Sau96I | GGNCC | 3 cut(s) | 825, 884, 1108 |
| SchI | GAGTC | 5 cut(s) | 304, 494, 937, 1052, 1197 |
| ScrFI | CCNGG | 5 cut(s) | 420, 512, 551, 590, 1317 |
| SduI | GDGCHC | 2 cut(s) | 289, 557 |
| SfaAI | GCGATCGC | 1 cut(s) | 1156 |
| SfaNI | GCATC | 6 cut(s) | 196, 476, 482, 488, 500, 661 |
| SfcI | CTRYAG | 1 cut(s) | 234 |
| Sfr303I | CCGCGG | 1 cut(s) | 1107 |
| SgfI | GCGATCGC | 1 cut(s) | 1156 |
| SgrBI | CCGCGG | 1 cut(s) | 1107 |
| SinI | GGWCC | 3 cut(s) | 825, 884, 1108 |
| SmlI | CTYRAG | 2 cut(s) | 119, 1268 |
| SmoI | CTYRAG | 2 cut(s) | 119, 1268 |
| Sse9I | AATT | 8 cut(s) | 373, 423, 629, 789, 847, 1213, 1233, 1378 |
| SsiI | CCGC | 8 cut(s) | 75, 209, 230, 471, 495, 919, 1104, 1106 |
| SspMI | CTAG | 1 cut(s) | 854 |
| StyD4I | CCNGG | 5 cut(s) | 418, 510, 549, 588, 1315 |
| StyI | CCWWGG | 2 cut(s) | 1020, 1356 |
| TaaI | ACNGT | 3 cut(s) | 93, 219, 527 |
| TaiI | ACGT | 1 cut(s) | 1400 |
| TaqI | TCGA | 4 cut(s) | 88, 273, 652, 765 |
| TasI | AATT | 8 cut(s) | 373, 423, 629, 789, 847, 1213, 1233, 1378 |
| TauI | GCSGC | 3 cut(s) | 212, 233, 922 |
| TfiI | GAWTC | 7 cut(s) | 323, 446, 767, 1274, 1312, 1322, 1343 |
| Tru1I | TTAA | 1 cut(s) | 1352 |
| Tru9I | TTAA | 1 cut(s) | 1352 |
| TscAI | CASTG | 3 cut(s) | 406, 808, 1134 |
| TseFI | GTSAC | 1 cut(s) | 23 |
| TseI | GCWGC | 4 cut(s) | 212, 930, 1013, 1158 |
| Tsp45I | GTSAC | 1 cut(s) | 23 |
| TspDTI | ATGAA | 8 cut(s) | 168, 264, 291, 691, 862, 996, 1052, 1356 |
| TspGWI | ACGGA | 6 cut(s) | 272, 380, 641, 746, 1172, 1209 |
| TspRI | CASTG | 3 cut(s) | 406, 808, 1134 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 803 |
| VpaK11BI | GGWCC | 3 cut(s) | 825, 884, 1108 |
| XapI | RAATTY | 5 cut(s) | 373, 423, 629, 847, 1213 |
| XmnI | GAANNNNTTC | 2 cut(s) | 129, 771 |
| XspI | CTAG | 1 cut(s) | 854 |