Rh4DG434100

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
63771627 .. 63776597
4971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG434100.1

Sequence Viewer

Length: 1188 bp
ATGGCTCCGCCGCAGCCGCCGGCTGAGAATGCTAGTAATTTGGCTGAACAGAGTTCTGGGGTGGATGAGAATGTGGCACAATATGGTGAGGATGAAGTGCGTGCCCCCATGCCGGTTATAAGGGACGTCCTGTATGATGATGTTGCACTCTATGGGGCTGGGTTGCTTTCATCTACATCACCAATGACAAGACTTCCAGTAAACGAATCGGGTGTGATTGCATTCCGCAACTTTAATGAGGAATTGAAACATCCTGGAGTATGGGAATCAAATGAAGGTGCTACATCCGCAACAGATAGCTCTCGAGATAATCTCGCTTCCTTGTATCGTCCTCCCTTTCAGCTACTGTTCCAGGGTTCTTTTGAAAAGGCAAAGAGTGCTGCTTCCGTCCAGGACAAATGGCTCATGGTGAACTTGCAATCCAATTCGGAGTTCAGCTCCCATATGCTTAATCGAGACACCTGGGCTAATGAAGCTGTTTCTCAAACCATTATCACTAATTTTATCTTCTGGCAGACATATGATGATACAACTGAAGGCAGGAAGGTTTGTACGTACTACAAATTGGAATCTATGCCTGTTGTTCTCATCATTGACCCCATCACCGGGCAGAAAATGCGTTCATGGAATGGAATGGTTCAACCGGAACGTTTGCTGGAGGATCTATTACCCTTCATGGATAGTGGTCCCAGGGATCATCATTTAGCTTTATCCAACAAGCGGCCTAGGGAAAGTTCTCTGCCTCAGCCACAGAATACAAATGAACAAGCTAGTGAAGAAGATGAGGAAGTGCAACGTGCATTAGCAGCTTCAATGGGGAGCATGAAGGGGACAAGTGGAACCATTTCGAAAGATGAAGAAGAGATCATTACTGACAAGGAAGAAGAAACATCCTTACCTAAAGTGCCTACATATCCACCTTTGCCTGAAGAACCCAAGGGTGATAAGAGCCTCATTTGCAGAGTTGGAGTCCGTCTTCCAGATGGGCGCAGGGCCCAGCGCAATTTTCTACGGATTGATCCTATTCAGCTTTTGTGGTCATTCTGCCATTCACAGTTGAAGGAAGAAAGGCCCATTCGACTGACTCATGCAGTCCCCGGAGCTACAAAGTGTCTGGATTATGATTGTGAATCTACATTTGAAGAGTCTGGTCTCCCCAACACTATGGTCTCAGTCACTTGGGAGTGA

Protein Analysis

395

Amino Acids

44.26

Weight (kDa)

4.76

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin_7 PF13899 120 - 200 5.4e-13 Thioredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 119
AatII GACGTC 1 cut(s) 129
AciI CCGC 6 cut(s) 8, 11, 17, 226, 288, 721
AclI AACGTT 1 cut(s) 649
AclWI GGATC 3 cut(s) 669, 702, 1013
AcuI CTGAAG 2 cut(s) 555, 948
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 553, 557
AfiI CCNNNNNNNGG 4 cut(s) 112, 605, 606, 720
AgsI TTSAA 6 cut(s) 247, 365, 641, 813, 1060, 1142
AjnI CCWGG 5 cut(s) 253, 351, 390, 461, 689
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
AluBI AGCT 9 cut(s) 300, 343, 438, 476, 707, 770, 809, 1030, 1103
AluI AGCT 9 cut(s) 300, 343, 438, 476, 707, 770, 809, 1030, 1103
Alw26I GTCTC 3 cut(s) 450, 1157, 1174
AlwI GGATC 3 cut(s) 669, 702, 1013
AlwNI CAGNNNCTG 1 cut(s) 346
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 3 cut(s) 722, 993, 1070
ApaI GGGCCC 1 cut(s) 997
ApeKI GCWGC 3 cut(s) 13, 380, 806
Asp700I GAANNNNTTC 1 cut(s) 844
AspA2I CCTAGG 1 cut(s) 725
AspLEI GCGC 2 cut(s) 990, 1002
AspS9I GGNCC 4 cut(s) 686, 993, 994, 1071
AsuC2I CCSGG 2 cut(s) 607, 1098
AsuHPI GGTGA 5 cut(s) 98, 171, 421, 595, 953
AsuII TTCGAA 1 cut(s) 848
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 1 cut(s) 686
AvrII CCTAGG 1 cut(s) 725
BaeGI GKGCMC 2 cut(s) 106, 997
BanII GRGCYC 1 cut(s) 997
BbsI GAAGAC 1 cut(s) 968
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 3 cut(s) 25, 367, 818
BccI CCATC 2 cut(s) 608, 977
BciT130I CCWGG 5 cut(s) 255, 353, 392, 463, 691
BcnI CCSGG 2 cut(s) 607, 1098
BcoDI GTCTC 3 cut(s) 450, 1157, 1174
BfaI CTAG 3 cut(s) 33, 726, 771
BisI GCNGC 6 cut(s) 11, 14, 17, 381, 722, 807
BlnI CCTAGG 1 cut(s) 725
BlsI GCNGC 6 cut(s) 12, 15, 18, 382, 723, 808
Bme1390I CCNGG 7 cut(s) 255, 353, 392, 463, 607, 691, 1098
Bme18I GGWCC 1 cut(s) 686
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 4 cut(s) 686, 993, 994, 1071
BmiI GGNNCC 4 cut(s) 6, 688, 841, 995
BmrFI CCNGG 7 cut(s) 255, 353, 392, 463, 607, 691, 1098
BpiI GAAGAC 1 cut(s) 968
BplI GAGNNNNNCTC 4 cut(s) 297, 329, 422, 454
BpmI CTGGAG 2 cut(s) 276, 677
Bpu10I CCTNAGC 1 cut(s) 744
Bpu14I TTCGAA 1 cut(s) 848
BpuMI CCSGG 2 cut(s) 607, 1098
BsaAI YACGTR 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 2 cut(s) 1157, 1174
BsaJI CCNNGG 7 cut(s) 352, 462, 689, 690, 725, 936, 1096
BsaWI WCCGGW 1 cut(s) 643
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 605, 606, 720
Bse118I RCCGGY 2 cut(s) 19, 112
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 5 cut(s) 255, 353, 392, 463, 691
BseDI CCNNGG 7 cut(s) 352, 462, 689, 690, 725, 936, 1096
BseGI GGATG 5 cut(s) 70, 97, 250, 284, 890
BseLI CCNNNNNNNGG 4 cut(s) 112, 605, 606, 720
BseMII CTCAG 3 cut(s) 15, 758, 1185
BseNI ACTGG 1 cut(s) 197
BseSI GKGCMC 2 cut(s) 106, 997
BseXI GCAGC 3 cut(s) 25, 367, 818
BseYI CCCAGC 2 cut(s) 158, 996
BshFI GGCC 3 cut(s) 724, 995, 1072
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 5 cut(s) 20, 113, 606, 644, 1098
BslFI GGGAC 4 cut(s) 137, 672, 844, 1079
BslI CCNNNNNNNGG 4 cut(s) 112, 605, 606, 720
BsmAI GTCTC 3 cut(s) 450, 1157, 1174
BsmFI GGGAC 4 cut(s) 137, 672, 844, 1079
BsmI GAATGC 2 cut(s) 34, 221
BsnI GGCC 3 cut(s) 724, 995, 1072
Bso31I GGTCTC 2 cut(s) 1157, 1174
BsoBI CYCGRG 1 cut(s) 303
Bsp119I TTCGAA 1 cut(s) 848
Bsp120I GGGCCC 1 cut(s) 993
Bsp1286I GDGCHC 2 cut(s) 106, 997
Bsp143I GATC 4 cut(s) 661, 694, 864, 1018
BspACI CCGC 6 cut(s) 8, 11, 17, 226, 288, 721
BspANI GGCC 3 cut(s) 724, 995, 1072
BspCNI CTCAG 3 cut(s) 16, 757, 1184
BspLI GGNNCC 4 cut(s) 6, 688, 841, 995
BspPI GGATC 3 cut(s) 669, 702, 1013
BspT104I TTCGAA 1 cut(s) 848
BspTNI GGTCTC 2 cut(s) 1157, 1174
BsrFI RCCGGY 2 cut(s) 19, 112
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 2 cut(s) 19, 112
BssECI CCNNGG 7 cut(s) 352, 462, 689, 690, 725, 936, 1096
BssMI GATC 4 cut(s) 661, 694, 864, 1018
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 2 cut(s) 725, 936
Bst2UI CCWGG 5 cut(s) 255, 353, 392, 463, 691
Bst4CI ACNGT 2 cut(s) 348, 1056
Bst6I CTCTTC 2 cut(s) 855, 1137
BstACI GRCGYC 1 cut(s) 126
BstAPI GCANNNNNTGC 2 cut(s) 377, 616
BstBAI YACGTR 1 cut(s) 555
BstBI TTCGAA 1 cut(s) 848
BstC8I GCNNGC 2 cut(s) 21, 102
BstDEI CTNAG 3 cut(s) 24, 744, 1171
BstF5I GGATG 5 cut(s) 70, 97, 250, 284, 890
BstHHI GCGC 2 cut(s) 990, 1002
BstKTI GATC 4 cut(s) 664, 697, 867, 1021
BstMAI GTCTC 3 cut(s) 450, 1157, 1174
BstMBI GATC 4 cut(s) 661, 694, 864, 1018
BstMWI GCNNNNNNNGC 8 cut(s) 16, 29, 287, 377, 473, 616, 806, 957
BstNI CCWGG 5 cut(s) 255, 353, 392, 463, 691
BstSCI CCNGG 7 cut(s) 253, 351, 390, 461, 605, 689, 1096
BstSLI GKGCMC 2 cut(s) 106, 997
BstSNI TACGTA 1 cut(s) 555
BstV1I GCAGC 3 cut(s) 25, 367, 818
BstV2I GAAGAC 1 cut(s) 968
BstX2I RGATCY 1 cut(s) 661
BstXI CCANNNNNNTGG 1 cut(s) 1165
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 3 cut(s) 724, 995, 1072
BtsCI GGATG 5 cut(s) 70, 97, 250, 284, 890
Cac8I GCNNGC 2 cut(s) 21, 102
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 2 cut(s) 990, 1002
Cfr10I RCCGGY 2 cut(s) 19, 112
Cfr13I GGNCC 4 cut(s) 686, 993, 994, 1071
Csp6I GTAC 2 cut(s) 552, 556
CviAII CATG 6 cut(s) 109, 406, 624, 676, 823, 1088
CviQI GTAC 2 cut(s) 552, 556
DdeI CTNAG 3 cut(s) 24, 744, 1171
DpnI GATC 4 cut(s) 663, 696, 866, 1020
DpnII GATC 4 cut(s) 661, 694, 864, 1018
Eam1104I CTCTTC 2 cut(s) 855, 1137
EarI CTCTTC 2 cut(s) 855, 1137
Eco105I TACGTA 1 cut(s) 555
Eco130I CCWWGG 2 cut(s) 725, 936
Eco24I GRGCYC 1 cut(s) 997
Eco31I GGTCTC 2 cut(s) 1157, 1174
Eco47I GGWCC 1 cut(s) 686
Eco57I CTGAAG 2 cut(s) 555, 948
Eco88I CYCGRG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 993
EcoRII CCWGG 5 cut(s) 253, 351, 390, 461, 689
EcoT14I CCWWGG 2 cut(s) 725, 936
EcoT38I GRGCYC 1 cut(s) 997
ErhI CCWWGG 2 cut(s) 725, 936
FaeI CATG 6 cut(s) 112, 409, 627, 679, 826, 1091
FaqI GGGAC 4 cut(s) 137, 672, 844, 1079
FatI CATG 6 cut(s) 108, 405, 623, 675, 822, 1087
FauNDI CATATG 2 cut(s) 444, 520
Fnu4HI GCNGC 6 cut(s) 11, 14, 17, 381, 722, 807
FokI GGATG 5 cut(s) 77, 104, 237, 271, 877
FriOI GRGCYC 1 cut(s) 997
Fsp4HI GCNGC 6 cut(s) 11, 14, 17, 381, 722, 807
FspBI CTAG 3 cut(s) 33, 726, 771
GlaI GCGC 2 cut(s) 989, 1001
GluI GCNGC 6 cut(s) 11, 14, 17, 381, 722, 807
GsaI CCCAGC 2 cut(s) 162, 1000
GsuI CTGGAG 2 cut(s) 276, 677
HaeIII GGCC 3 cut(s) 724, 995, 1072
HapII CCGG 5 cut(s) 20, 113, 606, 644, 1098
HhaI GCGC 2 cut(s) 990, 1002
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 6 cut(s) 112, 409, 627, 679, 826, 1091
Hin6I GCGC 2 cut(s) 988, 1000
HinP1I GCGC 2 cut(s) 988, 1000
HinfI GANTC 7 cut(s) 206, 266, 569, 969, 1084, 1130, 1145
HpaII CCGG 5 cut(s) 20, 113, 606, 644, 1098
HphI GGTGA 5 cut(s) 98, 171, 421, 595, 953
Hpy166II GTNNAC 2 cut(s) 202, 412
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 5 cut(s) 303, 305, 455, 980, 1115
Hpy8I GTNNAC 2 cut(s) 202, 412
HpyAV CCTTC 6 cut(s) 269, 530, 538, 682, 820, 1054
HpyCH4III ACNGT 2 cut(s) 348, 1056
HpyCH4IV ACGT 4 cut(s) 126, 554, 649, 796
HpyCH4V TGCA 7 cut(s) 146, 221, 418, 793, 800, 960, 1091
HpyF10VI GCNNNNNNNGC 8 cut(s) 16, 29, 287, 377, 473, 616, 806, 957
HpyF3I CTNAG 3 cut(s) 24, 744, 1171
HpySE526I ACGT 4 cut(s) 126, 554, 649, 796
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 6 cut(s) 112, 409, 627, 679, 826, 1091
HspAI GCGC 2 cut(s) 988, 1000
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Kzo9I GATC 4 cut(s) 661, 694, 864, 1018
LmnI GCTCC 4 cut(s) 10, 443, 819, 1100
Lsp1109I GCAGC 3 cut(s) 25, 367, 818
MaeI CTAG 3 cut(s) 33, 726, 771
MaeII ACGT 4 cut(s) 126, 554, 649, 796
MaeIII GTNAC 1 cut(s) 1174
MalI GATC 4 cut(s) 663, 696, 866, 1020
MboI GATC 4 cut(s) 661, 694, 864, 1018
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 2 cut(s) 106, 997
MluCI AATT 6 cut(s) 37, 242, 424, 499, 563, 1003
MlyI GAGTC 3 cut(s) 978, 1078, 1154
MmeI TCCRAC 2 cut(s) 738, 946
MnlI CCTC 7 cut(s) 82, 232, 342, 652, 753, 778, 962
MroNI GCCGGC 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 844
MseI TTAA 2 cut(s) 234, 450
MspI CCGG 5 cut(s) 20, 113, 606, 644, 1098
MspR9I CCNGG 7 cut(s) 255, 353, 392, 463, 607, 691, 1098
Mva1269I GAATGC 2 cut(s) 34, 221
MvaI CCWGG 5 cut(s) 255, 353, 392, 463, 691
MwoI GCNNNNNNNGC 8 cut(s) 16, 29, 287, 377, 473, 616, 806, 957
NaeI GCCGGC 1 cut(s) 21
NciI CCSGG 2 cut(s) 607, 1098
NdeI CATATG 2 cut(s) 444, 520
NdeII GATC 4 cut(s) 661, 694, 864, 1018
NgoMIV GCCGGC 1 cut(s) 19
NlaIII CATG 6 cut(s) 112, 409, 627, 679, 826, 1091
NlaIV GGNNCC 4 cut(s) 6, 688, 841, 995
NmuCI GTSAC 1 cut(s) 1174
NspV TTCGAA 1 cut(s) 848
PaeR7I CTCGAG 1 cut(s) 303
PasI CCCWGGG 1 cut(s) 690
PctI GAATGC 2 cut(s) 34, 221
PdiI GCCGGC 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 4 cut(s) 206, 266, 569, 1130
PfoI TCCNGGA 2 cut(s) 253, 390
PkrI GCNGC 6 cut(s) 12, 15, 18, 382, 723, 808
PleI GAGTC 3 cut(s) 977, 1078, 1153
PpsI GAGTC 3 cut(s) 977, 1078, 1153
Ppu21I YACGTR 1 cut(s) 555
PsiI TTATAA 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 649
Psp6I CCWGG 5 cut(s) 253, 351, 390, 461, 689
PspFI CCCAGC 2 cut(s) 158, 996
PspGI CCWGG 5 cut(s) 253, 351, 390, 461, 689
PspN4I GGNNCC 4 cut(s) 6, 688, 841, 995
PspOMI GGGCCC 1 cut(s) 993
PspPI GGNCC 4 cut(s) 686, 993, 994, 1071
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 661
RsaI GTAC 2 cut(s) 553, 557
RsaNI GTAC 2 cut(s) 552, 556
SaqAI TTAA 2 cut(s) 234, 450
SatI GCNGC 6 cut(s) 11, 14, 17, 381, 722, 807
Sau3AI GATC 4 cut(s) 661, 694, 864, 1018
Sau96I GGNCC 4 cut(s) 686, 993, 994, 1071
SchI GAGTC 3 cut(s) 978, 1078, 1154
ScrFI CCNGG 7 cut(s) 255, 353, 392, 463, 607, 691, 1098
SduI GDGCHC 2 cut(s) 106, 997
Sfr274I CTCGAG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 848
SinI GGWCC 1 cut(s) 686
SlaI CTCGAG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
SnaBI TACGTA 1 cut(s) 555
Sse9I AATT 6 cut(s) 37, 242, 424, 499, 563, 1003
SsiI CCGC 6 cut(s) 8, 11, 17, 226, 288, 721
SspMI CTAG 3 cut(s) 33, 726, 771
StyD4I CCNGG 7 cut(s) 253, 351, 390, 461, 605, 689, 1096
StyI CCWWGG 2 cut(s) 725, 936
TaaI ACNGT 2 cut(s) 348, 1056
TaiI ACGT 4 cut(s) 129, 557, 652, 799
TaqI TCGA 4 cut(s) 304, 454, 848, 1078
TasI AATT 6 cut(s) 37, 242, 424, 499, 563, 1003
TauI GCSGC 3 cut(s) 13, 19, 724
TfiI GAWTC 4 cut(s) 206, 266, 569, 1130
Tru1I TTAA 2 cut(s) 234, 450
Tru9I TTAA 2 cut(s) 234, 450
TseFI GTSAC 1 cut(s) 1174
TseI GCWGC 3 cut(s) 13, 380, 806
Tsp45I GTSAC 1 cut(s) 1174
TspDTI ATGAA 9 cut(s) 108, 159, 288, 486, 612, 664, 777, 839, 870
TspGWI ACGGA 3 cut(s) 376, 962, 1027
VpaK11BI GGWCC 1 cut(s) 686
XhoI CTCGAG 1 cut(s) 303
XmaJI CCTAGG 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 3 cut(s) 33, 726, 771
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.