Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002957.1

Orthogroup ID

OG0006223

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1467

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 439 bp

atgacaagacttccagtaaacgaatcgggtgtgattgcattccgcaactttaatgaggaattgaaacatcctggagtatgggaatcaaatgaaggtgctacatccgcaacagatagctctcgagataatctcgcttccttgtatcgtcctccctttcagctactgttccagggttcttttgaaaaggcaaagagtgctgcttccgtccaggacaaatggctcatggtgaacttgcaatccaattcggagttcagctcccatatgcttaatcgagacacctgggctaatgaagctgtttctcaaaccattatcactaattttatcttctggcagacatatgatgatacaactgaaggcaggaaggtttgtacgtactacaaattggaatctatgcctgttgttctcatcattgaccccatcactgggcagaaaatgcgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0030674 GO:0032182 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0060090 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_7 UBA_4 UBX

Protein Analysis

146

Amino Acids

16.66

Weight (kDa)

5.37

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14570 AT1G14570 AT1G14570 AT1G14570
fragaria_vesca	FvH4_4g36080 FvH4_4g36080 FvH4_4g36080 FvH4_4g36080
malus_domestica	MD13G1012500.v1.1 MD16G1009200.v1.1
prunus_persica	Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1
pyrus_communis	pycom13g01000 pycom16g00890
rosa_chinensis	RchiOBHm_Chr4g0445701
rosa_laevigata	RLG00000005715
rosa_multiflora	Rmu_sc0000961.1_g000019 Rmu_sc0002957.1_g000001 Rmu_sc0003637.1_g000013
rosa_roxburghii	Rroxscaffold_5G00386190
rosa_rugosa	Rorug03G0328200 Rorug04G0365000
rosa_samantha	Rh4AG425900 Rh4CG452900 Rh4DG434100
rosa_wichuraiana	Rw4G036480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	43, 105
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	2 cut(s)	370, 374
AfiI	CCNNNNNNNGG	2 cut(s)	422, 423
AgsI	TTSAA	2 cut(s)	64, 182
AjnI	CCWGG	4 cut(s)	70, 168, 207, 278
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	4 cut(s)	117, 160, 255, 293
AluI	AGCT	4 cut(s)	117, 160, 255, 293
Alw26I	GTCTC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	425
BciT130I	CCWGG	4 cut(s)	72, 170, 209, 280
BcoDI	GTCTC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	4 cut(s)	72, 170, 209, 280
BmeT110I	CYCGRG	1 cut(s)	120
BmrFI	CCNGG	4 cut(s)	72, 170, 209, 280
BmrI	ACTGGG	1 cut(s)	432
BmuI	ACTGGG	1 cut(s)	432
BplI	GAGNNNNNCTC	4 cut(s)	114, 146, 239, 271
BpmI	CTGGAG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	169, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 423
Bse1I	ACTGG	2 cut(s)	14, 427
BseBI	CCWGG	4 cut(s)	72, 170, 209, 280
BseDI	CCNNGG	2 cut(s)	169, 279
BseGI	GGATG	2 cut(s)	67, 101
BseLI	CCNNNNNNNGG	2 cut(s)	422, 423
BseNI	ACTGG	2 cut(s)	14, 427
BseXI	GCAGC	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	422, 423
BsmAI	GTCTC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	120
BspACI	CCGC	2 cut(s)	43, 105
BsrI	ACTGG	2 cut(s)	14, 427
BssECI	CCNNGG	2 cut(s)	169, 279
Bst2UI	CCWGG	4 cut(s)	72, 170, 209, 280
Bst4CI	ACNGT	1 cut(s)	165
BstAPI	GCANNNNNTGC	2 cut(s)	194, 433
BstBAI	YACGTR	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	67, 101
BstMAI	GTCTC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 194, 290, 433
BstNI	CCWGG	4 cut(s)	72, 170, 209, 280
BstSCI	CCNGG	4 cut(s)	70, 168, 207, 278
BstSNI	TACGTA	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	67, 101
BtsIMutI	CAGTG	1 cut(s)	420
CaiI	CAGNNNCTG	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	369, 373
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	6 cut(s)	117, 160, 220, 255, 284, 293
CviKI_1	RGCY	6 cut(s)	117, 160, 220, 255, 284, 293
CviQI	GTAC	2 cut(s)	369, 373
Eco105I	TACGTA	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	120
EcoRII	CCWGG	4 cut(s)	70, 168, 207, 278
FaeI	CATG	1 cut(s)	226
FaiI	YATR	7 cut(s)	79, 224, 261, 263, 337, 339, 392
FatI	CATG	1 cut(s)	222
FauNDI	CATATG	2 cut(s)	261, 337
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	54, 88
Fsp4HI	GCNGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	3 cut(s)	23, 83, 386
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	19, 229
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	120, 122, 272
Hpy8I	GTNNAC	2 cut(s)	19, 229
HpyAV	CCTTC	3 cut(s)	86, 347, 355
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	2 cut(s)	38, 235
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 194, 290, 433
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	371
MboII	GAAGA	1 cut(s)	316
MluCI	AATT	4 cut(s)	59, 241, 316, 380
MnlI	CCTC	2 cut(s)	49, 159
MseI	TTAA	2 cut(s)	51, 267
MspR9I	CCNGG	4 cut(s)	72, 170, 209, 280
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	4 cut(s)	72, 170, 209, 280
MwoI	GCNNNNNNNGC	4 cut(s)	104, 194, 290, 433
NdeI	CATATG	2 cut(s)	261, 337
NlaIII	CATG	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	120
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	23, 83, 386
PfoI	TCCNGGA	2 cut(s)	70, 207
PkrI	GCNGC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	372
Psp6I	CCWGG	4 cut(s)	70, 168, 207, 278
PspGI	CCWGG	4 cut(s)	70, 168, 207, 278
PstNI	CAGNNNCTG	1 cut(s)	163
RsaI	GTAC	2 cut(s)	370, 374
RsaNI	GTAC	2 cut(s)	369, 373
SaqAI	TTAA	2 cut(s)	51, 267
SatI	GCNGC	1 cut(s)	198
ScrFI	CCNGG	4 cut(s)	72, 170, 209, 280
SetI	ASST	8 cut(s)	97, 119, 162, 257, 281, 295, 366, 374
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SnaBI	TACGTA	1 cut(s)	372
Sse9I	AATT	4 cut(s)	59, 241, 316, 380
SsiI	CCGC	2 cut(s)	43, 105
StyD4I	CCNGG	4 cut(s)	70, 168, 207, 278
TaaI	ACNGT	1 cut(s)	165
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	121, 271
TasI	AATT	4 cut(s)	59, 241, 316, 380
TfiI	GAWTC	3 cut(s)	23, 83, 386
Tru1I	TTAA	2 cut(s)	51, 267
Tru9I	TTAA	2 cut(s)	51, 267
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	105, 303
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.