pycom13g01000

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
646853 .. 650942
4090 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01000.9

Sequence Viewer

Length: 1329 bp
ATGGAGGGTGTGATGTCAGCAAATGACCAGCAGAGCCTGGTGTCTTCGTTTTTGGAGATCGCCGTCGGACAGACAGCCGATACTGCCCGGCAGTTTCTGCAGGCCACTGGGTGGAAGCTTGAGGAAGCAATTCAGCTCTTTTATGTGGGTAATGAAGCTGGGATAATGGCCGAGGCGGCGCCACTACCGACTGAAAATATTGATCGGTTGGCCGATCAAGCTTCTGGTGTAAATGAAAATGTGGCACTTCCCGGTGCGAATGAGAATGTGGGACAATTCAGTGAAGATGAGGTGCGCGCGCCTATGCCTGTTATAAGGGACGTTCTTTATGACGATATGGCACTGTATGGAGCACCAAGGGCTCGATTGTCACAACATGAACAGGGTCCTGGGGTATGGGAATCAGACCAAGGTGCTACATCCTCAGAAAATGCTACTCAAGAGAATCTTGCATCCTTATATCGTCCTCCCTTTAAGATACTGTTCCAGGGTTCCTTTGAAAAGGCAAAAAGTGCTGCTTCTGTCCAGGACAAATGGCTACTGGTGAACTTGCAATCCACTAAAGAGTTCAGCTCGCATATGCTTAATCGAGACACCTGGGCCAATGAAGCTGTCTCGCAAACCATTATTACTAATTTTATCTTCTGGCAGACCTATGATGATACAACTGAAGGCAAGAAGGTTTGCACATACTACAAGTTGGAATCTATGCCTGTAGTGCTCCTTATTGACCCAATTACTGGACAAAAAATGCGTTCATGGAATGGAATGGTTCACCCGGATCGTTTTCTAGAGGATCTACTACTCTTCTTGGATGGTGGCCCTAGGGATCATCATGTAACTTTGTCCAATAAACGCCCAAGAGAAACTGCTCATCCACAAAAATCTAAGGTTGCAGAGGAAGCTAATGAAGAAGATGAGGAAATGCAGCGCGCATTGGCAGCTTCCATGGAAGGCATGAAGGAGACCAGTGGAACAATATCCAAGGACAAAGATGAAATTATCACTGACAAGGAGGAAGAAACTAGCTCAATCAAGAAGCCTACATACCCACCTTTGCCTGAAGAACCCAAGGGTGACAGGAACCTCCTATGCAGAGTTGGAGTCCGTCTTCCAGACGGTCGCAGGGTCCAGCGGAACTTCCTTCGTATTGATCCAATTCAGCTGTTGTGGTCATTCTGCTATTCCCAACTAACGGAAGTCGAGGCAAGGCCATTTCAGTTGACACAGGCAATCCCAGGAGCTTCAAAGAATCTGGATTATGATTGTCAATCTACTTTTGAAGAATCAGGTCTGGCCAACTCTATGGTCTCGGTTACTTGGGAATGA

Protein Analysis

443

Amino Acids

49.51

Weight (kDa)

4.73

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 178
AccB7I CCANNNNNTGG 2 cut(s) 111, 740
AccII CGCG 3 cut(s) 297, 299, 933
AciI CCGC 2 cut(s) 176, 1135
AclWI GGATC 4 cut(s) 789, 804, 837, 1148
AcoI YGGCCR 3 cut(s) 168, 210, 1296
AcuI CTGAAG 2 cut(s) 690, 1083
AcyI GRCGYC 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 111, 740, 1195
AgsI TTSAA 3 cut(s) 500, 1248, 1283
AjnI CCWGG 6 cut(s) 36, 388, 486, 525, 596, 1237
AloI GAACNNNNNNTCC 2 cut(s) 539, 571
Alw21I GWGCWC 2 cut(s) 355, 723
Alw26I GTCTC 4 cut(s) 585, 619, 959, 1315
AlwI GGATC 4 cut(s) 789, 804, 837, 1148
AlwNI CAGNNNCTG 2 cut(s) 37, 97
AoxI GGCC 7 cut(s) 102, 168, 210, 600, 820, 1211, 1296
ApeKI GCWGC 3 cut(s) 515, 928, 941
Asp700I GAANNNNTTC 1 cut(s) 129
AspA2I CCTAGG 1 cut(s) 824
AspLEI GCGC 6 cut(s) 181, 297, 299, 301, 933, 935
AspS9I GGNCC 4 cut(s) 386, 600, 821, 1129
AsuC2I CCSGG 3 cut(s) 88, 252, 779
AsuHPI GGTGA 3 cut(s) 556, 767, 1088
AvaII GGWCC 2 cut(s) 386, 1129
AvrII CCTAGG 1 cut(s) 824
BalI TGGCCA 1 cut(s) 1298
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 364
BarI GAAGNNNNNNTAC 2 cut(s) 1031, 1063
BbsI GAAGAC 2 cut(s) 36, 1103
Bbv12I GWGCWC 2 cut(s) 355, 723
BbvI GCAGC 3 cut(s) 502, 940, 953
BccI CCATC 1 cut(s) 809
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 6 cut(s) 38, 390, 488, 527, 598, 1239
BcnI CCSGG 3 cut(s) 88, 252, 779
BcoDI GTCTC 4 cut(s) 585, 619, 959, 1315
BfaI CTAG 3 cut(s) 791, 825, 1026
BfmI CTRYAG 2 cut(s) 98, 714
BfoI RGCGCY 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 4 cut(s) 177, 516, 929, 942
BlnI CCTAGG 1 cut(s) 824
BlsI GCNGC 4 cut(s) 178, 517, 930, 943
Bme1390I CCNGG 9 cut(s) 38, 88, 252, 390, 488, 527, 598, 779, 1239
Bme18I GGWCC 2 cut(s) 386, 1129
BmgT120I GGNCC 4 cut(s) 386, 600, 821, 1129
BmiI GGNNCC 5 cut(s) 180, 387, 493, 1085, 1130
BmrFI CCNGG 9 cut(s) 38, 88, 252, 390, 488, 527, 598, 779, 1239
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 117
BpiI GAAGAC 2 cut(s) 36, 1103
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpuEI CTTGAG 2 cut(s) 140, 423
BpuMI CCSGG 3 cut(s) 88, 252, 779
BsaHI GRCGYC 1 cut(s) 179
BsaI GGTCTC 2 cut(s) 959, 1315
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 740, 1195
Bse1I ACTGG 4 cut(s) 112, 546, 745, 969
BseBI CCWGG 6 cut(s) 38, 390, 488, 527, 598, 1239
BseGI GGATG 4 cut(s) 419, 452, 820, 874
BseLI CCNNNNNNNGG 3 cut(s) 111, 740, 1195
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 4 cut(s) 112, 546, 745, 969
BsePI GCGCGC 3 cut(s) 295, 297, 931
BseXI GCAGC 3 cut(s) 502, 940, 953
BseYI CCCAGC 1 cut(s) 158
Bsh1236I CGCG 3 cut(s) 297, 299, 933
Bsh1285I CGRYCG 1 cut(s) 1123
BshFI GGCC 7 cut(s) 104, 170, 212, 602, 822, 1213, 1298
BshNI GGYRCC 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 1123
BsiHKAI GWGCWC 2 cut(s) 355, 723
BsiSI CCGG 3 cut(s) 88, 252, 779
BslFI GGGAC 2 cut(s) 285, 332
BslI CCNNNNNNNGG 3 cut(s) 111, 740, 1195
BsmAI GTCTC 4 cut(s) 585, 619, 959, 1315
BsmFI GGGAC 2 cut(s) 285, 332
BsnI GGCC 7 cut(s) 104, 170, 212, 602, 822, 1213, 1298
Bso31I GGTCTC 2 cut(s) 959, 1315
Bsp1286I GDGCHC 3 cut(s) 355, 364, 723
Bsp143I GATC 7 cut(s) 57, 202, 214, 781, 796, 829, 1153
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 2 cut(s) 176, 1135
BspANI GGCC 7 cut(s) 104, 170, 212, 602, 822, 1213, 1298
BspCNI CTCAG 1 cut(s) 437
BspFNI CGCG 3 cut(s) 297, 299, 933
BspLI GGNNCC 5 cut(s) 180, 387, 493, 1085, 1130
BspMAI CTGCAG 1 cut(s) 102
BspPI GGATC 4 cut(s) 789, 804, 837, 1148
BspT107I GGYRCC 1 cut(s) 178
BspTNI GGTCTC 2 cut(s) 959, 1315
BsrI ACTGG 4 cut(s) 112, 546, 745, 969
BssHII GCGCGC 3 cut(s) 295, 297, 931
BssMI GATC 7 cut(s) 57, 202, 214, 781, 796, 829, 1153
BssNI GRCGYC 1 cut(s) 179
BssT1I CCWWGG 6 cut(s) 356, 409, 824, 948, 984, 1071
Bst2UI CCWGG 6 cut(s) 38, 390, 488, 527, 598, 1239
Bst4CI ACNGT 3 cut(s) 345, 483, 1121
Bst6I CTCTTC 1 cut(s) 812
BstACI GRCGYC 1 cut(s) 179
BstAPI GCANNNNNTGC 2 cut(s) 97, 512
BstC8I GCNNGC 5 cut(s) 102, 297, 299, 575, 933
BstDEI CTNAG 2 cut(s) 424, 888
BstDSI CCRYGG 1 cut(s) 948
BstF5I GGATG 4 cut(s) 419, 452, 820, 874
BstFNI CGCG 3 cut(s) 297, 299, 933
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 6 cut(s) 181, 297, 299, 301, 933, 935
BstKTI GATC 7 cut(s) 60, 205, 217, 784, 799, 832, 1156
BstMAI GTCTC 4 cut(s) 585, 619, 959, 1315
BstMBI GATC 7 cut(s) 57, 202, 214, 781, 796, 829, 1153
BstMCI CGRYCG 1 cut(s) 1123
BstNI CCWGG 6 cut(s) 38, 390, 488, 527, 598, 1239
BstSCI CCNGG 9 cut(s) 36, 86, 250, 388, 486, 525, 596, 777, 1237
BstSFI CTRYAG 2 cut(s) 98, 714
BstUI CGCG 3 cut(s) 297, 299, 933
BstV1I GCAGC 3 cut(s) 502, 940, 953
BstV2I GAAGAC 2 cut(s) 36, 1103
BstX2I RGATCY 1 cut(s) 796
BstXI CCANNNNNNTGG 1 cut(s) 1306
BstYI RGATCY 1 cut(s) 796
BsuRI GGCC 7 cut(s) 104, 170, 212, 602, 822, 1213, 1298
BtgI CCRYGG 1 cut(s) 948
BtsCI GGATG 4 cut(s) 419, 452, 820, 874
BtsIMutI CAGTG 5 cut(s) 105, 286, 341, 976, 1005
Cac8I GCNNGC 5 cut(s) 102, 297, 299, 575, 933
CaiI CAGNNNCTG 2 cut(s) 37, 97
CfoI GCGC 6 cut(s) 181, 297, 299, 301, 933, 935
Cfr13I GGNCC 4 cut(s) 386, 600, 821, 1129
CviAII CATG 5 cut(s) 377, 759, 836, 949, 958
DdeI CTNAG 2 cut(s) 424, 888
DinI GGCGCC 1 cut(s) 180
DpnI GATC 7 cut(s) 59, 204, 216, 783, 798, 831, 1155
DpnII GATC 7 cut(s) 57, 202, 214, 781, 796, 829, 1153
DraIII CACNNNGTG 1 cut(s) 111
EaeI YGGCCR 3 cut(s) 168, 210, 1296
Eam1104I CTCTTC 1 cut(s) 812
EarI CTCTTC 1 cut(s) 812
Eco130I CCWWGG 6 cut(s) 356, 409, 824, 948, 984, 1071
Eco24I GRGCYC 1 cut(s) 364
Eco31I GGTCTC 2 cut(s) 959, 1315
Eco47I GGWCC 2 cut(s) 386, 1129
Eco57I CTGAAG 2 cut(s) 690, 1083
EcoO109I RGGNCCY 1 cut(s) 386
EcoRII CCWGG 6 cut(s) 36, 388, 486, 525, 596, 1237
EcoT14I CCWWGG 6 cut(s) 356, 409, 824, 948, 984, 1071
EcoT38I GRGCYC 1 cut(s) 364
EgeI GGCGCC 1 cut(s) 180
EheI GGCGCC 1 cut(s) 180
ErhI CCWWGG 6 cut(s) 356, 409, 824, 948, 984, 1071
FaeI CATG 5 cut(s) 380, 762, 839, 952, 961
FalI AAGNNNNNCTT 4 cut(s) 432, 464, 502, 534
FaqI GGGAC 2 cut(s) 285, 332
FatI CATG 5 cut(s) 376, 758, 835, 948, 957
FauNDI CATATG 1 cut(s) 579
Fnu4HI GCNGC 4 cut(s) 177, 516, 929, 942
FokI GGATG 4 cut(s) 406, 439, 827, 861
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 4 cut(s) 177, 516, 929, 942
FspBI CTAG 3 cut(s) 791, 825, 1026
GlaI GCGC 6 cut(s) 180, 296, 298, 300, 932, 934
GluI GCNGC 4 cut(s) 177, 516, 929, 942
GsaI CCCAGC 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 7 cut(s) 104, 170, 212, 602, 822, 1213, 1298
HapII CCGG 3 cut(s) 88, 252, 779
HhaI GCGC 6 cut(s) 181, 297, 299, 301, 933, 935
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 5 cut(s) 380, 762, 839, 952, 961
Hin6I GCGC 6 cut(s) 179, 295, 297, 299, 931, 933
HinP1I GCGC 6 cut(s) 179, 295, 297, 299, 931, 933
HincII GTYRAC 1 cut(s) 1224
HindII GTYRAC 1 cut(s) 1224
HindIII AAGCTT 2 cut(s) 116, 219
HinfI GANTC 6 cut(s) 401, 445, 704, 1104, 1252, 1286
HpaII CCGG 3 cut(s) 88, 252, 779
HphI GGTGA 3 cut(s) 556, 767, 1088
Hpy166II GTNNAC 3 cut(s) 547, 775, 1224
Hpy188I TCNGA 3 cut(s) 68, 406, 427
Hpy188III TCNNGA 6 cut(s) 440, 590, 791, 1036, 1115, 1256
Hpy8I GTNNAC 3 cut(s) 547, 775, 1224
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 5 cut(s) 665, 673, 947, 955, 1154
HpyCH4III ACNGT 3 cut(s) 345, 483, 1121
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 7 cut(s) 100, 452, 553, 687, 896, 928, 1095
HpyF3I CTNAG 2 cut(s) 424, 888
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 5 cut(s) 380, 762, 839, 952, 961
HspAI GCGC 6 cut(s) 179, 295, 297, 299, 931, 933
KasI GGCGCC 1 cut(s) 178
Kzo9I GATC 7 cut(s) 57, 202, 214, 781, 796, 829, 1153
LmnI GCTCC 3 cut(s) 350, 726, 1241
Lsp1109I GCAGC 3 cut(s) 502, 940, 953
LweI GCATC 1 cut(s) 461
MaeI CTAG 3 cut(s) 791, 825, 1026
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 4 cut(s) 369, 838, 1076, 1315
MalI GATC 7 cut(s) 59, 204, 216, 783, 798, 831, 1155
MboI GATC 7 cut(s) 57, 202, 214, 781, 796, 829, 1153
MflI RGATCY 1 cut(s) 796
MhlI GDGCHC 3 cut(s) 355, 364, 723
MlsI TGGCCA 1 cut(s) 1298
MluCI AATT 6 cut(s) 129, 275, 634, 735, 999, 1158
MluNI TGGCCA 1 cut(s) 1298
Mly113I GGCGCC 1 cut(s) 179
MlyI GAGTC 1 cut(s) 1113
MmeI TCCRAC 3 cut(s) 46, 681, 1081
Mox20I TGGCCA 1 cut(s) 1298
MroXI GAANNNNTTC 1 cut(s) 129
MscI TGGCCA 1 cut(s) 1298
MseI TTAA 2 cut(s) 474, 585
Msp20I TGGCCA 1 cut(s) 1298
MspA1I CMGCKG 2 cut(s) 1135, 1165
MspI CCGG 3 cut(s) 88, 252, 779
MspR9I CCNGG 9 cut(s) 38, 88, 252, 390, 488, 527, 598, 779, 1239
MvaI CCWGG 6 cut(s) 38, 390, 488, 527, 598, 1239
MvnI CGCG 3 cut(s) 297, 299, 933
NarI GGCGCC 1 cut(s) 179
NciI CCSGG 3 cut(s) 88, 252, 779
NcoI CCATGG 1 cut(s) 948
NdeI CATATG 1 cut(s) 579
NdeII GATC 7 cut(s) 57, 202, 214, 781, 796, 829, 1153
NlaIII CATG 5 cut(s) 380, 762, 839, 952, 961
NlaIV GGNNCC 5 cut(s) 180, 387, 493, 1085, 1130
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 369, 1076
PauI GCGCGC 3 cut(s) 295, 297, 931
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 5 cut(s) 401, 445, 704, 1252, 1286
PflMI CCANNNNNTGG 2 cut(s) 111, 740
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 4 cut(s) 178, 517, 930, 943
PleI GAGTC 1 cut(s) 1112
PluTI GGCGCC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 1112
PpuMI RGGWCCY 1 cut(s) 386
PsiI TTATAA 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 6 cut(s) 36, 388, 486, 525, 596, 1237
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 6 cut(s) 36, 388, 486, 525, 596, 1237
PspN4I GGNNCC 5 cut(s) 180, 387, 493, 1085, 1130
PspPI GGNCC 4 cut(s) 386, 600, 821, 1129
PspPPI RGGWCCY 1 cut(s) 386
PstI CTGCAG 1 cut(s) 102
PstNI CAGNNNCTG 2 cut(s) 37, 97
PsuI RGATCY 1 cut(s) 796
PteI GCGCGC 3 cut(s) 295, 297, 931
PvuII CAGCTG 1 cut(s) 1165
SaqAI TTAA 2 cut(s) 474, 585
SatI GCNGC 4 cut(s) 177, 516, 929, 942
Sau3AI GATC 7 cut(s) 57, 202, 214, 781, 796, 829, 1153
Sau96I GGNCC 4 cut(s) 386, 600, 821, 1129
SchI GAGTC 1 cut(s) 1113
ScrFI CCNGG 9 cut(s) 38, 88, 252, 390, 488, 527, 598, 779, 1239
SduI GDGCHC 3 cut(s) 355, 364, 723
SfaNI GCATC 1 cut(s) 461
SfcI CTRYAG 2 cut(s) 98, 714
SfoI GGCGCC 1 cut(s) 180
SinI GGWCC 2 cut(s) 386, 1129
SmlI CTYRAG 2 cut(s) 119, 438
SmoI CTYRAG 2 cut(s) 119, 438
Sse9I AATT 6 cut(s) 129, 275, 634, 735, 999, 1158
SsiI CCGC 2 cut(s) 176, 1135
SspDI GGCGCC 1 cut(s) 178
SspI AATATT 1 cut(s) 199
SspMI CTAG 3 cut(s) 791, 825, 1026
StyD4I CCNGG 9 cut(s) 36, 86, 250, 388, 486, 525, 596, 777, 1237
StyI CCWWGG 6 cut(s) 356, 409, 824, 948, 984, 1071
TaaI ACNGT 3 cut(s) 345, 483, 1121
TaiI ACGT 1 cut(s) 324
TaqI TCGA 3 cut(s) 364, 589, 1203
TasI AATT 6 cut(s) 129, 275, 634, 735, 999, 1158
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 5 cut(s) 401, 445, 704, 1252, 1286
Tru1I TTAA 2 cut(s) 474, 585
Tru9I TTAA 2 cut(s) 474, 585
TscAI CASTG 5 cut(s) 112, 286, 348, 976, 1012
TseFI GTSAC 2 cut(s) 369, 1076
TseI GCWGC 3 cut(s) 515, 928, 941
Tsp45I GTSAC 2 cut(s) 369, 1076
TspDTI ATGAA 8 cut(s) 168, 249, 393, 621, 747, 924, 974, 1011
TspGWI ACGGA 2 cut(s) 1097, 1211
TspRI CASTG 5 cut(s) 112, 286, 348, 976, 1012
Van91I CCANNNNNTGG 2 cut(s) 111, 740
VpaK11BI GGWCC 2 cut(s) 386, 1129
XbaI TCTAGA 1 cut(s) 790
XmaJI CCTAGG 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 3 cut(s) 791, 825, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.