Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006223

Physical Location & Seq

Genomic Coordinates Forward (+)

72231923 .. 72233374

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG425900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCCTGTTGTTCTCATCATTGACCCCATCACCGGGCAGAAAATGCGTTCATGGAATGGAATGGTTCAACCGGAACGTTTGCTGGAGGATCTATTACCCTTCATGGATAGTGGTCCCAGGGATCATCATTTAGCTTTATCCAACAAGCGGCCTAGGGAAAGTTCTCTGCCTCAGCCACAGAATACAAATGAACAAGCTAGTGAAGAAGATGAGGAAGTGCAACGTGCATTAGCAGCTTCAATGGGGAGCATGAAGGGGACAAGTGGAACCATTTCGAAAGATGAAGAAGAGATCATTACTGACAAGGAAGAAGAAACATCCTTACCTAAAGTGCCTACATATCCACCTTTGCCTGAAGAACCCAAGGGTGATAAGAGCCTCATTTGCAGAGTTGGAGTCCGTCTTCCAGATGGGCGCAGGGCCCAGCGCAATTTTCTACGGATTGATCCTATTCAGCTTTTGTGGTCATTCTGCCATTCACAGTTGAAGGAAGAAAGGCCCATTCGACTGACTCATGCAGTCCCCGGAGCTACAAAGTGTCTGGATTATGATTGTGAATCTACATTTGAAGAGTCTGGTCTCCCCAACACTATGGTCTCAGTCACTTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0030674 GO:0032182 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0060090 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_7 UBA_4 UBX

Protein Analysis

204

Amino Acids

23.02

Weight (kDa)

5.0

Isoelectric Point (pI)

62.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14570 AT1G14570 AT1G14570 AT1G14570
fragaria_vesca	FvH4_4g36080 FvH4_4g36080 FvH4_4g36080 FvH4_4g36080
malus_domestica	MD13G1012500.v1.1 MD16G1009200.v1.1
prunus_persica	Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1
pyrus_communis	pycom13g01000 pycom16g00890
rosa_chinensis	RchiOBHm_Chr4g0445701
rosa_laevigata	RLG00000005715
rosa_multiflora	Rmu_sc0000961.1_g000019 Rmu_sc0002957.1_g000001 Rmu_sc0003637.1_g000013
rosa_roxburghii	Rroxscaffold_5G00386190
rosa_rugosa	Rorug03G0328200 Rorug04G0365000
rosa_samantha	Rh4AG425900 Rh4CG452900 Rh4DG434100
rosa_wichuraiana	Rw4G036480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	148
AclI	AACGTT	1 cut(s)	76
AclWI	GGATC	3 cut(s)	96, 129, 440
AcuI	CTGAAG	1 cut(s)	375
AfiI	CCNNNNNNNGG	3 cut(s)	32, 33, 147
AgsI	TTSAA	4 cut(s)	68, 240, 487, 569
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	5 cut(s)	134, 197, 236, 457, 530
AluI	AGCT	5 cut(s)	134, 197, 236, 457, 530
Alw26I	GTCTC	2 cut(s)	584, 601
AlwI	GGATC	3 cut(s)	96, 129, 440
AoxI	GGCC	3 cut(s)	149, 420, 497
ApaI	GGGCCC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	271
AspA2I	CCTAGG	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	417, 429
AspS9I	GGNCC	4 cut(s)	113, 420, 421, 498
AsuC2I	CCSGG	2 cut(s)	34, 525
AsuHPI	GGTGA	2 cut(s)	22, 380
AsuII	TTCGAA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	113
AvrII	CCTAGG	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	395
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	2 cut(s)	35, 404
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	34, 525
BcoDI	GTCTC	2 cut(s)	584, 601
BfaI	CTAG	2 cut(s)	153, 198
BisI	GCNGC	2 cut(s)	149, 234
BlnI	CCTAGG	1 cut(s)	152
BlsI	GCNGC	2 cut(s)	150, 235
Bme1390I	CCNGG	3 cut(s)	34, 118, 525
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	4 cut(s)	113, 420, 421, 498
BmiI	GGNNCC	3 cut(s)	115, 268, 422
BmrFI	CCNGG	3 cut(s)	34, 118, 525
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	34, 525
BsaI	GGTCTC	2 cut(s)	584, 601
BsaJI	CCNNGG	5 cut(s)	116, 117, 152, 363, 523
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 33, 147
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	5 cut(s)	116, 117, 152, 363, 523
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	3 cut(s)	32, 33, 147
BseMII	CTCAG	2 cut(s)	185, 612
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	245
BseYI	CCCAGC	1 cut(s)	423
BshFI	GGCC	3 cut(s)	151, 422, 499
BsiSI	CCGG	3 cut(s)	33, 71, 525
BslFI	GGGAC	3 cut(s)	99, 271, 506
BslI	CCNNNNNNNGG	3 cut(s)	32, 33, 147
BsmAI	GTCTC	2 cut(s)	584, 601
BsmFI	GGGAC	3 cut(s)	99, 271, 506
BsnI	GGCC	3 cut(s)	151, 422, 499
Bso31I	GGTCTC	2 cut(s)	584, 601
Bsp119I	TTCGAA	1 cut(s)	275
Bsp120I	GGGCCC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	4 cut(s)	88, 121, 291, 445
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	3 cut(s)	151, 422, 499
BspCNI	CTCAG	2 cut(s)	184, 611
BspLI	GGNNCC	3 cut(s)	115, 268, 422
BspPI	GGATC	3 cut(s)	96, 129, 440
BspT104I	TTCGAA	1 cut(s)	275
BspTNI	GGTCTC	2 cut(s)	584, 601
BssECI	CCNNGG	5 cut(s)	116, 117, 152, 363, 523
BssMI	GATC	4 cut(s)	88, 121, 291, 445
BssT1I	CCWWGG	2 cut(s)	152, 363
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	483
Bst6I	CTCTTC	2 cut(s)	282, 564
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	171, 598
BstF5I	GGATG	1 cut(s)	317
BstHHI	GCGC	2 cut(s)	417, 429
BstKTI	GATC	4 cut(s)	91, 124, 294, 448
BstMAI	GTCTC	2 cut(s)	584, 601
BstMBI	GATC	4 cut(s)	88, 121, 291, 445
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 233, 384
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	3 cut(s)	32, 116, 523
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	151, 422, 499
BtsCI	GGATG	1 cut(s)	317
CfoI	GCGC	2 cut(s)	417, 429
Cfr13I	GGNCC	4 cut(s)	113, 420, 421, 498
CviAII	CATG	4 cut(s)	51, 103, 250, 515
DdeI	CTNAG	2 cut(s)	171, 598
DpnI	GATC	4 cut(s)	90, 123, 293, 447
DpnII	GATC	4 cut(s)	88, 121, 291, 445
Eam1104I	CTCTTC	2 cut(s)	282, 564
EarI	CTCTTC	2 cut(s)	282, 564
Eco130I	CCWWGG	2 cut(s)	152, 363
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	2 cut(s)	584, 601
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	152, 363
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	2 cut(s)	152, 363
FaeI	CATG	4 cut(s)	54, 106, 253, 518
FaiI	YATR	7 cut(s)	52, 104, 251, 340, 516, 549, 593
FaqI	GGGAC	3 cut(s)	99, 271, 506
FatI	CATG	4 cut(s)	50, 102, 249, 514
Fnu4HI	GCNGC	2 cut(s)	149, 234
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	2 cut(s)	149, 234
FspBI	CTAG	2 cut(s)	153, 198
GlaI	GCGC	2 cut(s)	416, 428
GluI	GCNGC	2 cut(s)	149, 234
GsaI	CCCAGC	1 cut(s)	427
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	151, 422, 499
HapII	CCGG	3 cut(s)	33, 71, 525
HhaI	GCGC	2 cut(s)	417, 429
Hin1II	CATG	4 cut(s)	54, 106, 253, 518
Hin6I	GCGC	2 cut(s)	415, 427
HinP1I	GCGC	2 cut(s)	415, 427
HinfI	GANTC	4 cut(s)	396, 511, 557, 572
HpaII	CCGG	3 cut(s)	33, 71, 525
HphI	GGTGA	2 cut(s)	22, 380
Hpy188III	TCNNGA	2 cut(s)	407, 542
HpyAV	CCTTC	3 cut(s)	109, 247, 481
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4IV	ACGT	2 cut(s)	76, 223
HpyCH4V	TGCA	4 cut(s)	220, 227, 387, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 233, 384
HpyF3I	CTNAG	2 cut(s)	171, 598
HpySE526I	ACGT	2 cut(s)	76, 223
Hsp92II	CATG	4 cut(s)	54, 106, 253, 518
HspAI	GCGC	2 cut(s)	415, 427
Kzo9I	GATC	4 cut(s)	88, 121, 291, 445
LmnI	GCTCC	2 cut(s)	246, 527
Lsp1109I	GCAGC	1 cut(s)	245
MaeI	CTAG	2 cut(s)	153, 198
MaeII	ACGT	2 cut(s)	76, 223
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	4 cut(s)	90, 123, 293, 447
MboI	GATC	4 cut(s)	88, 121, 291, 445
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	1 cut(s)	430
MlyI	GAGTC	3 cut(s)	405, 505, 581
MmeI	TCCRAC	2 cut(s)	165, 373
MnlI	CCTC	4 cut(s)	79, 180, 205, 389
MroXI	GAANNNNTTC	1 cut(s)	271
MspI	CCGG	3 cut(s)	33, 71, 525
MspR9I	CCNGG	3 cut(s)	34, 118, 525
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	43, 233, 384
NciI	CCSGG	2 cut(s)	34, 525
NdeII	GATC	4 cut(s)	88, 121, 291, 445
NlaIII	CATG	4 cut(s)	54, 106, 253, 518
NlaIV	GGNNCC	3 cut(s)	115, 268, 422
NmuCI	GTSAC	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	275
PasI	CCCWGGG	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	150, 235
PleI	GAGTC	3 cut(s)	404, 505, 580
PpsI	GAGTC	3 cut(s)	404, 505, 580
Psp1406I	AACGTT	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	115, 268, 422
PspOMI	GGGCCC	1 cut(s)	420
PspPI	GGNCC	4 cut(s)	113, 420, 421, 498
PsuI	RGATCY	1 cut(s)	88
SatI	GCNGC	2 cut(s)	149, 234
Sau3AI	GATC	4 cut(s)	88, 121, 291, 445
Sau96I	GGNCC	4 cut(s)	113, 420, 421, 498
SchI	GAGTC	3 cut(s)	405, 505, 581
ScrFI	CCNGG	3 cut(s)	34, 118, 525
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	9 cut(s)	79, 136, 199, 226, 238, 328, 349, 459, 532
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	153, 198
StyD4I	CCNGG	3 cut(s)	32, 116, 523
StyI	CCWWGG	2 cut(s)	152, 363
TaaI	ACNGT	1 cut(s)	483
TaiI	ACGT	2 cut(s)	79, 226
TaqI	TCGA	2 cut(s)	275, 505
TasI	AATT	1 cut(s)	430
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	557
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	5 cut(s)	39, 91, 204, 266, 297
TspGWI	ACGGA	2 cut(s)	389, 454
VpaK11BI	GGWCC	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	2 cut(s)	153, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.