MD13G1012500.v1.1

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
720279 .. 724973
4695 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1012500.v1.1.491

Sequence Viewer

Length: 1311 bp
ATGTCAGCAAATGACCAGCAGAGCCTGGTGTCTTCGTTTTTGGAGATCGCCGTCGGACAGACCGCCGATACTGCCCGGCAGTTTCTGCAGGCCACTGGGTGGAAGCTTGAGGAAGCAATTCAGCTATTTTATGTGGGTAATGAAGCTGGGATAATGGCCGAGGCGGCGCCACTACCGACTGAAAATATTGATCGGTTGGCCGATCAAGCTTCTGGTGTAAATGAAAATGTGGCACTTCCTGGGGCGAATGAGAATGTGGGACAATTCAGTGAGGATGAGGTGCGCGCGCCTATGCCTGTTATAAGGGACGTTCTTTATGACGATATGGCACTCTATGGAGCACCAAGGGCTAGATTGTCACAACATGAACAGGGTCCTGGGGTATGGGAATCAGACCAAGGTGCTACATCCTCAGAAAATGCTACTCAAGAGAATCTTGCATCCTTATATCGTCCTCCATTTAAGATACTGTTCCAGGGTTCCTTTGAAAAGGCAAAAAGTGCTGCTTCTGTCCAGGACAAATGGCTACTGGTGAACTTGCAATCCACTAAAGAGTTCAGCTCGCATATGCTTAATCGAGATACCTGGGCCAATGAAGCTGTCTCTCAAACCATTATTACTAATTTTATCTTCTGGCAGACCTATGATGATACAACTGAAGGCAAGAAGGTTTGCACATACTACAAGTTGGAATCTATGCCTGTAGTGCTCCTTATTGACCCAATTACTGGACAAAAAATGCGTTCATGGAATGGAATGGTTCACCCGGATCGTTTTCTAGAGGATCTACTACTCTTCTTGGATAGTGGCCCCAGGGATCATCATGTAACTTTGTCCAATAAACGCCCAAGAGAAACTGCTCATCCACAAAAAACTAAAGAGGAAACTAATGAAGAAGATGAGGAAATGCAGCGCGCATTGGCAGCTTCCATGGAAGGCATGAAGGAGACCAGTGGAACAATATCCAAAGACAAAGATGAAATCATCACTGACAAGGAGGAAGAAACTAGCTCAATCAAGATGCCTACATACCCACCTTTGCCTGAAGAACCCAAGGGTGACCGGAACCTCCTATGCAGAGTTGGAGTCCGTCTTCCAGACGGTCGCAGGGTCCAGCGGAACTTCCTTCGTATTGATCCAATTCAGCTGTTGTGGTCATTCTGCTATTCCCAACTAAAGGAAGCCGAGGCAAGGCCATTTCAGTTGACACAGGCAATCCCAGGAGCTTCAAAGAATCTGGATTATGATTGTCAATCTACTTTTGAAGAATCGGGTCTGGCCAACTCTATGGTCTCGGTTACTTGGGAATGA

Protein Analysis

437

Amino Acids

49.0

Weight (kDa)

4.75

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 8 - 45 4.3e-11 UBA-like domain
Thioredoxin_7 PF13899 161 - 241 2.2e-12 Thioredoxin-like
UBX PF00789 359 - 430 6.2e-07 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 166
AccB7I CCANNNNNTGG 2 cut(s) 99, 728
AccII CGCG 3 cut(s) 285, 287, 915
AciI CCGC 3 cut(s) 63, 164, 1117
AclWI GGATC 4 cut(s) 777, 792, 825, 1130
AcoI YGGCCR 3 cut(s) 156, 198, 1278
AcuI CTGAAG 2 cut(s) 678, 1065
AcyI GRCGYC 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 99
AfiI CCNNNNNNNGG 4 cut(s) 99, 728, 1177, 1191
AgsI TTSAA 3 cut(s) 488, 1230, 1265
AjnI CCWGG 8 cut(s) 24, 238, 376, 474, 513, 584, 812, 1219
AloI GAACNNNNNNTCC 2 cut(s) 527, 559
Alw21I GWGCWC 2 cut(s) 343, 711
Alw26I GTCTC 3 cut(s) 607, 941, 1297
AlwI GGATC 4 cut(s) 777, 792, 825, 1130
AlwNI CAGNNNCTG 2 cut(s) 25, 85
AoxI GGCC 7 cut(s) 90, 156, 198, 588, 808, 1193, 1278
ApeKI GCWGC 3 cut(s) 503, 910, 923
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 6 cut(s) 169, 285, 287, 289, 915, 917
AspS9I GGNCC 4 cut(s) 374, 588, 809, 1111
AsuC2I CCSGG 2 cut(s) 76, 767
AsuHPI GGTGA 3 cut(s) 544, 755, 1070
AvaII GGWCC 2 cut(s) 374, 1111
BalI TGGCCA 1 cut(s) 1280
BanI GGYRCC 1 cut(s) 166
BbsI GAAGAC 2 cut(s) 24, 1085
Bbv12I GWGCWC 2 cut(s) 343, 711
BbvI GCAGC 3 cut(s) 490, 922, 935
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 8 cut(s) 26, 240, 378, 476, 515, 586, 814, 1221
BcnI CCSGG 2 cut(s) 76, 767
BcoDI GTCTC 3 cut(s) 607, 941, 1297
BfaI CTAG 3 cut(s) 351, 779, 1008
BfmI CTRYAG 2 cut(s) 86, 702
BfoI RGCGCY 1 cut(s) 170
BglI GCCNNNNNGGC 1 cut(s) 164
BisI GCNGC 4 cut(s) 165, 504, 911, 924
BlsI GCNGC 4 cut(s) 166, 505, 912, 925
Bme18I GGWCC 2 cut(s) 374, 1111
BmgT120I GGNCC 4 cut(s) 374, 588, 809, 1111
BmiI GGNNCC 6 cut(s) 168, 375, 481, 811, 1067, 1112
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 449, 1011
BmuI ACTGGG 1 cut(s) 105
BpiI GAAGAC 2 cut(s) 24, 1085
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BpuEI CTTGAG 2 cut(s) 128, 411
BpuMI CCSGG 2 cut(s) 76, 767
BsaHI GRCGYC 1 cut(s) 167
BsaI GGTCTC 2 cut(s) 941, 1297
BsaWI WCCGGW 1 cut(s) 1062
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 728, 1177, 1191
Bse1I ACTGG 4 cut(s) 100, 534, 733, 951
BseBI CCWGG 8 cut(s) 26, 240, 378, 476, 515, 586, 814, 1221
BseGI GGATG 4 cut(s) 280, 407, 440, 862
BseLI CCNNNNNNNGG 4 cut(s) 99, 728, 1177, 1191
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 4 cut(s) 100, 534, 733, 951
BsePI GCGCGC 3 cut(s) 283, 285, 913
BseXI GCAGC 3 cut(s) 490, 922, 935
BseYI CCCAGC 1 cut(s) 146
Bsh1236I CGCG 3 cut(s) 285, 287, 915
Bsh1285I CGRYCG 1 cut(s) 1105
BshFI GGCC 7 cut(s) 92, 158, 200, 590, 810, 1195, 1280
BshNI GGYRCC 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 1105
BsiHKAI GWGCWC 2 cut(s) 343, 711
BsiSI CCGG 3 cut(s) 76, 767, 1063
BslFI GGGAC 2 cut(s) 273, 320
BslI CCNNNNNNNGG 4 cut(s) 99, 728, 1177, 1191
BsmAI GTCTC 3 cut(s) 607, 941, 1297
BsmFI GGGAC 2 cut(s) 273, 320
BsnI GGCC 7 cut(s) 92, 158, 200, 590, 810, 1195, 1280
Bso31I GGTCTC 2 cut(s) 941, 1297
Bsp1286I GDGCHC 2 cut(s) 343, 711
Bsp143I GATC 7 cut(s) 45, 190, 202, 769, 784, 817, 1135
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 3 cut(s) 63, 164, 1117
BspANI GGCC 7 cut(s) 92, 158, 200, 590, 810, 1195, 1280
BspCNI CTCAG 1 cut(s) 425
BspFNI CGCG 3 cut(s) 285, 287, 915
BspLI GGNNCC 6 cut(s) 168, 375, 481, 811, 1067, 1112
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 4 cut(s) 777, 792, 825, 1130
BspT107I GGYRCC 1 cut(s) 166
BspTNI GGTCTC 2 cut(s) 941, 1297
BsrI ACTGG 4 cut(s) 100, 534, 733, 951
BssHII GCGCGC 3 cut(s) 283, 285, 913
BssMI GATC 7 cut(s) 45, 190, 202, 769, 784, 817, 1135
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 4 cut(s) 344, 397, 930, 1053
Bst2UI CCWGG 8 cut(s) 26, 240, 378, 476, 515, 586, 814, 1221
Bst4CI ACNGT 2 cut(s) 471, 1103
Bst6I CTCTTC 1 cut(s) 800
BstACI GRCGYC 1 cut(s) 167
BstAPI GCANNNNNTGC 2 cut(s) 85, 500
BstC8I GCNNGC 5 cut(s) 90, 285, 287, 563, 915
BstDEI CTNAG 1 cut(s) 412
BstDSI CCRYGG 1 cut(s) 930
BstEII GGTNACC 1 cut(s) 1058
BstF5I GGATG 4 cut(s) 280, 407, 440, 862
BstFNI CGCG 3 cut(s) 285, 287, 915
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 6 cut(s) 169, 285, 287, 289, 915, 917
BstKTI GATC 7 cut(s) 48, 193, 205, 772, 787, 820, 1138
BstMAI GTCTC 3 cut(s) 607, 941, 1297
BstMBI GATC 7 cut(s) 45, 190, 202, 769, 784, 817, 1135
BstMCI CGRYCG 1 cut(s) 1105
BstMWI GCNNNNNNNGC 9 cut(s) 71, 85, 164, 206, 347, 500, 596, 706, 923
BstNI CCWGG 8 cut(s) 26, 240, 378, 476, 515, 586, 814, 1221
BstPI GGTNACC 1 cut(s) 1058
BstSFI CTRYAG 2 cut(s) 86, 702
BstUI CGCG 3 cut(s) 285, 287, 915
BstV1I GCAGC 3 cut(s) 490, 922, 935
BstV2I GAAGAC 2 cut(s) 24, 1085
BstX2I RGATCY 1 cut(s) 784
BstXI CCANNNNNNTGG 1 cut(s) 1288
BstYI RGATCY 1 cut(s) 784
BsuRI GGCC 7 cut(s) 92, 158, 200, 590, 810, 1195, 1280
BtgI CCRYGG 1 cut(s) 930
BtsCI GGATG 4 cut(s) 280, 407, 440, 862
BtsIMutI CAGTG 4 cut(s) 93, 274, 958, 987
Cac8I GCNNGC 5 cut(s) 90, 285, 287, 563, 915
CaiI CAGNNNCTG 2 cut(s) 25, 85
CfoI GCGC 6 cut(s) 169, 285, 287, 289, 915, 917
Cfr13I GGNCC 4 cut(s) 374, 588, 809, 1111
CviAII CATG 5 cut(s) 365, 747, 824, 931, 940
DdeI CTNAG 1 cut(s) 412
DinI GGCGCC 1 cut(s) 168
DpnI GATC 7 cut(s) 47, 192, 204, 771, 786, 819, 1137
DpnII GATC 7 cut(s) 45, 190, 202, 769, 784, 817, 1135
DraIII CACNNNGTG 1 cut(s) 99
EaeI YGGCCR 3 cut(s) 156, 198, 1278
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
Eco130I CCWWGG 4 cut(s) 344, 397, 930, 1053
Eco31I GGTCTC 2 cut(s) 941, 1297
Eco47I GGWCC 2 cut(s) 374, 1111
Eco57I CTGAAG 2 cut(s) 678, 1065
Eco91I GGTNACC 1 cut(s) 1058
EcoO109I RGGNCCY 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 1058
EcoRII CCWGG 8 cut(s) 24, 238, 376, 474, 513, 584, 812, 1219
EcoT14I CCWWGG 4 cut(s) 344, 397, 930, 1053
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
ErhI CCWWGG 4 cut(s) 344, 397, 930, 1053
FaeI CATG 5 cut(s) 368, 750, 827, 934, 943
FalI AAGNNNNNCTT 4 cut(s) 420, 452, 490, 522
FaqI GGGAC 2 cut(s) 273, 320
FatI CATG 5 cut(s) 364, 746, 823, 930, 939
FauNDI CATATG 1 cut(s) 567
Fnu4HI GCNGC 4 cut(s) 165, 504, 911, 924
FokI GGATG 4 cut(s) 287, 394, 427, 849
Fsp4HI GCNGC 4 cut(s) 165, 504, 911, 924
FspBI CTAG 3 cut(s) 351, 779, 1008
GlaI GCGC 6 cut(s) 168, 284, 286, 288, 914, 916
GluI GCNGC 4 cut(s) 165, 504, 911, 924
GsaI CCCAGC 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 7 cut(s) 92, 158, 200, 590, 810, 1195, 1280
HapII CCGG 3 cut(s) 76, 767, 1063
HhaI GCGC 6 cut(s) 169, 285, 287, 289, 915, 917
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 5 cut(s) 368, 750, 827, 934, 943
Hin6I GCGC 6 cut(s) 167, 283, 285, 287, 913, 915
HinP1I GCGC 6 cut(s) 167, 283, 285, 287, 913, 915
HincII GTYRAC 1 cut(s) 1206
HindII GTYRAC 1 cut(s) 1206
HindIII AAGCTT 2 cut(s) 104, 207
HinfI GANTC 6 cut(s) 389, 433, 692, 1086, 1234, 1268
HpaII CCGG 3 cut(s) 76, 767, 1063
HphI GGTGA 3 cut(s) 544, 755, 1070
Hpy166II GTNNAC 3 cut(s) 535, 763, 1206
Hpy188I TCNGA 3 cut(s) 56, 394, 415
Hpy188III TCNNGA 6 cut(s) 428, 578, 779, 1018, 1097, 1238
Hpy8I GTNNAC 3 cut(s) 535, 763, 1206
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 5 cut(s) 653, 661, 929, 937, 1136
HpyCH4III ACNGT 2 cut(s) 471, 1103
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 6 cut(s) 88, 440, 541, 675, 910, 1077
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 85, 164, 206, 347, 500, 596, 706, 923
HpyF3I CTNAG 1 cut(s) 412
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 5 cut(s) 368, 750, 827, 934, 943
HspAI GCGC 6 cut(s) 167, 283, 285, 287, 913, 915
KasI GGCGCC 1 cut(s) 166
Kzo9I GATC 7 cut(s) 45, 190, 202, 769, 784, 817, 1135
LmnI GCTCC 3 cut(s) 338, 714, 1223
Lsp1109I GCAGC 3 cut(s) 490, 922, 935
LweI GCATC 2 cut(s) 449, 1011
MaeI CTAG 3 cut(s) 351, 779, 1008
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 4 cut(s) 357, 826, 1058, 1297
MalI GATC 7 cut(s) 47, 192, 204, 771, 786, 819, 1137
MboI GATC 7 cut(s) 45, 190, 202, 769, 784, 817, 1135
MboII GAAGA 9 cut(s) 24, 622, 787, 905, 908, 1013, 1058, 1085, 1277
MflI RGATCY 1 cut(s) 784
MhlI GDGCHC 2 cut(s) 343, 711
MlsI TGGCCA 1 cut(s) 1280
MluCI AATT 5 cut(s) 117, 263, 622, 723, 1140
MluNI TGGCCA 1 cut(s) 1280
Mly113I GGCGCC 1 cut(s) 167
MlyI GAGTC 1 cut(s) 1095
MmeI TCCRAC 3 cut(s) 34, 669, 1063
Mox20I TGGCCA 1 cut(s) 1280
MroXI GAANNNNTTC 1 cut(s) 117
MscI TGGCCA 1 cut(s) 1280
MseI TTAA 2 cut(s) 462, 573
Msp20I TGGCCA 1 cut(s) 1280
MspA1I CMGCKG 2 cut(s) 1117, 1147
MspI CCGG 3 cut(s) 76, 767, 1063
MvaI CCWGG 8 cut(s) 26, 240, 378, 476, 515, 586, 814, 1221
MvnI CGCG 3 cut(s) 285, 287, 915
MwoI GCNNNNNNNGC 9 cut(s) 71, 85, 164, 206, 347, 500, 596, 706, 923
NarI GGCGCC 1 cut(s) 167
NciI CCSGG 2 cut(s) 76, 767
NcoI CCATGG 1 cut(s) 930
NdeI CATATG 1 cut(s) 567
NdeII GATC 7 cut(s) 45, 190, 202, 769, 784, 817, 1135
NlaIII CATG 5 cut(s) 368, 750, 827, 934, 943
NlaIV GGNNCC 6 cut(s) 168, 375, 481, 811, 1067, 1112
NmeAIII GCCGAG 2 cut(s) 184, 1210
NmuCI GTSAC 2 cut(s) 357, 1058
PasI CCCWGGG 1 cut(s) 813
PauI GCGCGC 3 cut(s) 283, 285, 913
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 5 cut(s) 389, 433, 692, 1234, 1268
PflMI CCANNNNNTGG 2 cut(s) 99, 728
PfoI TCCNGGA 1 cut(s) 513
PkrI GCNGC 4 cut(s) 166, 505, 912, 925
PleI GAGTC 1 cut(s) 1094
PluTI GGCGCC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 1094
PpuMI RGGWCCY 1 cut(s) 374
PsiI TTATAA 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 8 cut(s) 24, 238, 376, 474, 513, 584, 812, 1219
PspEI GGTNACC 1 cut(s) 1058
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 8 cut(s) 24, 238, 376, 474, 513, 584, 812, 1219
PspN4I GGNNCC 6 cut(s) 168, 375, 481, 811, 1067, 1112
PspPI GGNCC 4 cut(s) 374, 588, 809, 1111
PspPPI RGGWCCY 1 cut(s) 374
PstI CTGCAG 1 cut(s) 90
PstNI CAGNNNCTG 2 cut(s) 25, 85
PsuI RGATCY 1 cut(s) 784
PteI GCGCGC 3 cut(s) 283, 285, 913
PvuII CAGCTG 1 cut(s) 1147
SaqAI TTAA 2 cut(s) 462, 573
SatI GCNGC 4 cut(s) 165, 504, 911, 924
Sau3AI GATC 7 cut(s) 45, 190, 202, 769, 784, 817, 1135
Sau96I GGNCC 4 cut(s) 374, 588, 809, 1111
SchI GAGTC 1 cut(s) 1095
SduI GDGCHC 2 cut(s) 343, 711
SfaNI GCATC 2 cut(s) 449, 1011
SfcI CTRYAG 2 cut(s) 86, 702
SfoI GGCGCC 1 cut(s) 168
SinI GGWCC 2 cut(s) 374, 1111
SmlI CTYRAG 2 cut(s) 107, 426
SmoI CTYRAG 2 cut(s) 107, 426
Sse9I AATT 5 cut(s) 117, 263, 622, 723, 1140
SsiI CCGC 3 cut(s) 63, 164, 1117
SspDI GGCGCC 1 cut(s) 166
SspI AATATT 1 cut(s) 187
SspMI CTAG 3 cut(s) 351, 779, 1008
StyI CCWWGG 4 cut(s) 344, 397, 930, 1053
TaaI ACNGT 2 cut(s) 471, 1103
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 577
TasI AATT 5 cut(s) 117, 263, 622, 723, 1140
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 5 cut(s) 389, 433, 692, 1234, 1268
Tru1I TTAA 2 cut(s) 462, 573
Tru9I TTAA 2 cut(s) 462, 573
TscAI CASTG 4 cut(s) 100, 274, 958, 994
TseFI GTSAC 2 cut(s) 357, 1058
TseI GCWGC 3 cut(s) 503, 910, 923
Tsp45I GTSAC 2 cut(s) 357, 1058
TspDTI ATGAA 8 cut(s) 156, 237, 381, 609, 735, 906, 956, 993
TspGWI ACGGA 1 cut(s) 1079
TspRI CASTG 4 cut(s) 100, 274, 958, 994
Van91I CCANNNNNTGG 2 cut(s) 99, 728
VpaK11BI GGWCC 2 cut(s) 374, 1111
XbaI TCTAGA 1 cut(s) 778
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 3 cut(s) 351, 779, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.