Rorug03G0328200

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
36437705 .. 36439104
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0328200.1

Sequence Viewer

Length: 1305 bp
ATGGCAGCGATATTGTGCAGCAGCAGCAGCAGTGCTAGTGAGCAACATCATCGGGCGTTTCAATTCAATTACGTCCTGCATTTCCTCTTCTTTGTTATTGGTTTGTCACTCGGCATCCTGGCTACCTTATATTTCCAGAGTTACTCAATATTAGTCACTTTTCAAGCATCTCTCAACTCCATTAATAATTTTATTAACACTCCACTAAAACCATCACCGCCATCACAACCTCCGCCTCGACCGAAATTACCACCTACACCTCCACCTCCACCGCCACTGCCACCGCCACTGCCACCGCCGCTTCTGGTACTGTCTTTCTCAACAATTAATGCAACATCATCATCAGTATTAGTTAATTACAGTAGCAGTCTCAGCACTAGTGTTTCTTTGAAAGAACAAAAGCTGTTAGTACACAACATGAGCGACGAGGAGTTACTTTGGAGAGCATCCATGGCCCCTCAAGCTGATTCGCCTTATAACTGTGTTCCGAAAGTGGCTTTCATGTTCTTGACAAAAGGGCCTCTACCTTTGGCTCCCTTATGGGACAAATTTTTCGAGGGACACGAGGGTCTATACTCTATCTATGTGCATGCGCACCCTTCTTTTAATGAATCACAGCCTCAAACTTCTGTCTTCCATGGTCGAAGAATTAATAGCCAGGCCGTTTACTGGGGAACTTCCTCAATGTTGGATGCAGAGCGACGGCTATTAGCAAATGCACTGCTTGACCTGTCAAATCAAAGATTTGTATTGCTTTCCGAATCTTGCATTCCCTTGTTTAACTTCACGACAACTTATGACTACCTTGTAAACTCAAATCAAAGTTTTCTAAGCGTATTCGATGACCCGAGGAAGCCTGGTCGAGGGCGGTACAACCCTCAAATGTGGCCCCAAATAAACATCACAGATTGGCGGAAAGGATCTCAATGGTTTGAAGTGCACCGAGACCTGGCCGTCCACATTGTCTCCGATCGGAAATACTACCCCATCTTTCAACAATACTGCCACCCTCCTTGTTATATCGATGAGCATTATATTCCAACACTCGTCAACATGTTGTACGCTGATCTCAACTCTGAGAGGAGCATTACATGGGTGGATTGGTCAAGGGGTGGTCCTCATCCTGGGAAATTTGGATGGCCTGATATTACAGATGAGTTTTTGAATGGAATTCGGTTCGGATCGCAGTGCAAATACAACAGCAGTACTACTTCATTATGTTTCTTATTTGGTAGGAAGTTTTTGCCTAATGCTCTGGAGCCTTTGTTACGAGTTGCTCCACTGCTGCTTGGCTTTGATCCCTAG

Protein Analysis

434

Amino Acids

49.15

Weight (kDa)

7.67

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 165 - 391 3e-82 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AasI GACNNNNNNGTC 2 cut(s) 567, 953
Acc16I TGCGCA 1 cut(s) 594
AciI CCGC 8 cut(s) 218, 233, 272, 284, 296, 299, 868, 913
AclWI GGATC 3 cut(s) 928, 1189, 1292
AcoI YGGCCR 1 cut(s) 951
AcsI RAATTY 3 cut(s) 548, 1130, 1170
AfaI GTAC 5 cut(s) 309, 411, 872, 1061, 1207
AfiI CCNNNNNNNGG 4 cut(s) 669, 863, 949, 1124
AflIII ACRYGT 1 cut(s) 1053
AgsI TTSAA 7 cut(s) 62, 67, 164, 391, 935, 995, 1165
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 5 cut(s) 117, 657, 856, 948, 1123
AluBI AGCT 2 cut(s) 403, 464
AluI AGCT 2 cut(s) 403, 464
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 3 cut(s) 374, 939, 970
Alw44I GTGCAC 1 cut(s) 938
AlwI GGATC 3 cut(s) 928, 1189, 1292
Ama87I CYCGRG 1 cut(s) 847
AoxI GGCC 6 cut(s) 453, 518, 660, 887, 951, 1139
ApaLI GTGCAC 1 cut(s) 938
ApeKI GCWGC 6 cut(s) 5, 18, 21, 24, 27, 1285
ApoI RAATTY 3 cut(s) 548, 1130, 1170
ArsI GACNNNNNNTTYG 2 cut(s) 536, 568
AseI ATTAAT 3 cut(s) 183, 327, 651
AspLEI GCGC 1 cut(s) 595
AspS9I GGNCC 4 cut(s) 454, 518, 888, 1115
AsuHPI GGTGA 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 847
AvaII GGWCC 1 cut(s) 1115
BaeGI GKGCMC 1 cut(s) 942
BauI CACGAG 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 942
BbvI GCAGC 6 cut(s) 17, 30, 33, 36, 39, 1272
BccI CCATC 4 cut(s) 220, 229, 995, 1131
BceAI ACGGC 3 cut(s) 647, 719, 938
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 5 cut(s) 119, 659, 858, 950, 1125
BcoDI GTCTC 3 cut(s) 374, 939, 970
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 3 cut(s) 36, 378, 1303
BisI GCNGC 7 cut(s) 6, 19, 22, 25, 28, 299, 1286
BlsI GCNGC 7 cut(s) 7, 20, 23, 26, 29, 300, 1287
BmcAI AGTACT 1 cut(s) 1207
Bme1390I CCNGG 5 cut(s) 119, 659, 858, 950, 1125
Bme18I GGWCC 1 cut(s) 1115
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 4 cut(s) 454, 518, 888, 1115
BmiI GGNNCC 4 cut(s) 456, 534, 890, 1260
BmrFI CCNGG 5 cut(s) 119, 659, 858, 950, 1125
BmrI ACTGGG 1 cut(s) 679
BmsI GCATC 4 cut(s) 123, 176, 455, 682
BmuI ACTGGG 1 cut(s) 679
BpiI GAAGAC 1 cut(s) 625
BpmI CTGGAG 1 cut(s) 1277
BpuEI CTTGAG 1 cut(s) 444
Bsa29I ATCGAT 1 cut(s) 1023
BsaI GGTCTC 1 cut(s) 939
BsaJI CCNNGG 4 cut(s) 450, 637, 848, 1124
BsaXI ACNNNNNCTCC 4 cut(s) 950, 980, 1250, 1280
Bsc4I CCNNNNNNNGG 4 cut(s) 669, 863, 949, 1124
Bse1I ACTGG 1 cut(s) 674
BseBI CCWGG 5 cut(s) 119, 659, 858, 950, 1125
BseCI ATCGAT 1 cut(s) 1023
BseDI CCNNGG 4 cut(s) 450, 637, 848, 1124
BseGI GGATG 5 cut(s) 114, 446, 697, 1120, 1142
BseLI CCNNNNNNNGG 4 cut(s) 669, 863, 949, 1124
BseMII CTCAG 2 cut(s) 385, 1068
BseNI ACTGG 1 cut(s) 674
BseRI GAGGAG 2 cut(s) 443, 1096
BseSI GKGCMC 1 cut(s) 942
BseXI GCAGC 6 cut(s) 17, 30, 33, 36, 39, 1272
BsgI GTGCAG 1 cut(s) 37
Bsh1285I CGRYCG 2 cut(s) 242, 973
BshFI GGCC 6 cut(s) 455, 520, 662, 889, 953, 1141
BshVI ATCGAT 1 cut(s) 1023
BsiEI CGRYCG 2 cut(s) 242, 973
BsiHKAI GWGCWC 1 cut(s) 942
BsiHKCI CYCGRG 1 cut(s) 847
BslFI GGGAC 2 cut(s) 557, 573
BslI CCNNNNNNNGG 4 cut(s) 669, 863, 949, 1124
BsmAI GTCTC 3 cut(s) 374, 939, 970
BsmFI GGGAC 2 cut(s) 557, 573
BsmI GAATGC 1 cut(s) 768
BsnI GGCC 6 cut(s) 455, 520, 662, 889, 953, 1141
Bso31I GGTCTC 1 cut(s) 939
BsoBI CYCGRG 1 cut(s) 847
Bsp1286I GDGCHC 1 cut(s) 942
Bsp143I GATC 5 cut(s) 920, 970, 1066, 1181, 1297
Bsp19I CCATGG 2 cut(s) 450, 637
BspACI CCGC 8 cut(s) 218, 233, 272, 284, 296, 299, 868, 913
BspANI GGCC 6 cut(s) 455, 520, 662, 889, 953, 1141
BspCNI CTCAG 2 cut(s) 384, 1069
BspDI ATCGAT 1 cut(s) 1023
BspLI GGNNCC 4 cut(s) 456, 534, 890, 1260
BspPI GGATC 3 cut(s) 928, 1189, 1292
BspTNI GGTCTC 1 cut(s) 939
BsrI ACTGG 1 cut(s) 674
BssECI CCNNGG 4 cut(s) 450, 637, 848, 1124
BssMI GATC 5 cut(s) 920, 970, 1066, 1181, 1297
BssSI CACGAG 1 cut(s) 563
BssT1I CCWWGG 2 cut(s) 450, 637
Bst2BI CACGAG 1 cut(s) 563
Bst2UI CCWGG 5 cut(s) 119, 659, 858, 950, 1125
Bst4CI ACNGT 3 cut(s) 312, 362, 482
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 3 cut(s) 371, 830, 1077
BstDSI CCRYGG 2 cut(s) 450, 637
BstENI CCTNNNNNAGG 1 cut(s) 861
BstF5I GGATG 5 cut(s) 114, 446, 697, 1120, 1142
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 5 cut(s) 923, 973, 1069, 1184, 1300
BstMAI GTCTC 3 cut(s) 374, 939, 970
BstMBI GATC 5 cut(s) 920, 970, 1066, 1181, 1297
BstMCI CGRYCG 2 cut(s) 242, 973
BstMWI GCNNNNNNNGC 6 cut(s) 24, 27, 298, 372, 452, 461
BstNI CCWGG 5 cut(s) 119, 659, 858, 950, 1125
BstNSI RCATGY 2 cut(s) 593, 1057
BstSCI CCNGG 5 cut(s) 117, 657, 856, 948, 1123
BstSLI GKGCMC 1 cut(s) 942
BstV1I GCAGC 6 cut(s) 17, 30, 33, 36, 39, 1272
BstV2I GAAGAC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 920
BstYI RGATCY 1 cut(s) 920
Bsu15I ATCGAT 1 cut(s) 1023
BsuRI GGCC 6 cut(s) 455, 520, 662, 889, 953, 1141
BsuTUI ATCGAT 1 cut(s) 1023
BtgI CCRYGG 2 cut(s) 450, 637
BtsCI GGATG 5 cut(s) 114, 446, 697, 1120, 1142
BtsI GCAGTG 6 cut(s) 37, 275, 287, 719, 1193, 1280
BtsIMutI CAGTG 6 cut(s) 37, 275, 287, 719, 1193, 1280
Cac8I GCNNGC 1 cut(s) 591
CfoI GCGC 1 cut(s) 595
Cfr13I GGNCC 4 cut(s) 454, 518, 888, 1115
ClaI ATCGAT 1 cut(s) 1023
Csp6I GTAC 5 cut(s) 308, 410, 871, 1060, 1206
CspCI CAANNNNNGTGG 2 cut(s) 995, 1030
CviAII CATG 7 cut(s) 418, 451, 502, 590, 638, 1054, 1092
CviQI GTAC 5 cut(s) 308, 410, 871, 1060, 1206
DdeI CTNAG 3 cut(s) 371, 830, 1077
DpnI GATC 5 cut(s) 922, 972, 1068, 1183, 1299
DpnII GATC 5 cut(s) 920, 970, 1066, 1181, 1297
DrdI GACNNNNNNGTC 2 cut(s) 567, 953
DseDI GACNNNNNNGTC 2 cut(s) 567, 953
EaeI YGGCCR 1 cut(s) 951
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 2 cut(s) 222, 928
Eco130I CCWWGG 2 cut(s) 450, 637
Eco31I GGTCTC 1 cut(s) 939
Eco47I GGWCC 1 cut(s) 1115
Eco88I CYCGRG 1 cut(s) 847
EcoNI CCTNNNNNAGG 1 cut(s) 861
EcoO109I RGGNCCY 1 cut(s) 518
EcoRI GAATTC 1 cut(s) 1170
EcoRII CCWGG 5 cut(s) 117, 657, 856, 948, 1123
EcoT14I CCWWGG 2 cut(s) 450, 637
ErhI CCWWGG 2 cut(s) 450, 637
FaeI CATG 7 cut(s) 421, 454, 505, 593, 641, 1057, 1095
FaqI GGGAC 2 cut(s) 557, 573
FatI CATG 7 cut(s) 417, 450, 501, 589, 637, 1053, 1091
Fnu4HI GCNGC 7 cut(s) 6, 19, 22, 25, 28, 299, 1286
FokI GGATG 5 cut(s) 101, 433, 704, 1107, 1149
Fsp4HI GCNGC 7 cut(s) 6, 19, 22, 25, 28, 299, 1286
FspAI RTGCGCAY 1 cut(s) 594
FspBI CTAG 3 cut(s) 36, 378, 1303
FspI TGCGCA 1 cut(s) 594
GlaI GCGC 1 cut(s) 594
GluI GCNGC 7 cut(s) 6, 19, 22, 25, 28, 299, 1286
GsuI CTGGAG 1 cut(s) 1277
HaeIII GGCC 6 cut(s) 455, 520, 662, 889, 953, 1141
HhaI GCGC 1 cut(s) 595
Hin1II CATG 7 cut(s) 421, 454, 505, 593, 641, 1057, 1095
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HincII GTYRAC 1 cut(s) 1051
HindII GTYRAC 1 cut(s) 1051
HinfI GANTC 3 cut(s) 467, 611, 761
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 6 cut(s) 412, 667, 811, 940, 958, 1051
Hpy188I TCNGA 6 cut(s) 489, 760, 970, 975, 1078, 1181
Hpy188III TCNNGA 4 cut(s) 136, 508, 787, 1256
Hpy8I GTNNAC 6 cut(s) 412, 667, 811, 940, 958, 1051
Hpy99I CGWCG 2 cut(s) 428, 705
HpyAV CCTTC 1 cut(s) 609
HpyCH4III ACNGT 3 cut(s) 312, 362, 482
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 9 cut(s) 18, 79, 332, 589, 695, 719, 768, 940, 1191
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 27, 298, 372, 452, 461
HpyF3I CTNAG 3 cut(s) 371, 830, 1077
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 7 cut(s) 421, 454, 505, 593, 641, 1057, 1095
HspAI GCGC 1 cut(s) 593
Kzo9I GATC 5 cut(s) 920, 970, 1066, 1181, 1297
LmnI GCTCC 4 cut(s) 538, 1083, 1258, 1282
Lsp1109I GCAGC 6 cut(s) 17, 30, 33, 36, 39, 1272
LweI GCATC 4 cut(s) 123, 176, 455, 682
MaeI CTAG 3 cut(s) 36, 378, 1303
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 5 cut(s) 105, 140, 154, 432, 1266
MalI GATC 5 cut(s) 922, 972, 1068, 1183, 1299
MboI GATC 5 cut(s) 920, 970, 1066, 1181, 1297
MboII GAAGA 3 cut(s) 79, 625, 657
MflI RGATCY 1 cut(s) 920
MhlI GDGCHC 1 cut(s) 942
MmeI TCCRAC 2 cut(s) 669, 1064
MseI TTAA 7 cut(s) 183, 195, 327, 354, 606, 651, 780
MspR9I CCNGG 5 cut(s) 119, 659, 858, 950, 1125
Mva1269I GAATGC 1 cut(s) 768
MvaI CCWGG 5 cut(s) 119, 659, 858, 950, 1125
MwoI GCNNNNNNNGC 6 cut(s) 24, 27, 298, 372, 452, 461
NcoI CCATGG 2 cut(s) 450, 637
NdeII GATC 5 cut(s) 920, 970, 1066, 1181, 1297
NlaIII CATG 7 cut(s) 421, 454, 505, 593, 641, 1057, 1095
NlaIV GGNNCC 4 cut(s) 456, 534, 890, 1260
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 105, 154
NsbI TGCGCA 1 cut(s) 594
NspI RCATGY 2 cut(s) 593, 1057
PaeI GCATGC 1 cut(s) 593
PciI ACATGT 1 cut(s) 1053
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PctI GAATGC 1 cut(s) 768
PfeI GAWTC 3 cut(s) 467, 611, 761
PkrI GCNGC 7 cut(s) 7, 20, 23, 26, 29, 300, 1287
Ple19I CGATCG 1 cut(s) 973
PscI ACATGT 1 cut(s) 1053
PshBI ATTAAT 3 cut(s) 183, 327, 651
PsiI TTATAA 1 cut(s) 477
Psp6I CCWGG 5 cut(s) 117, 657, 856, 948, 1123
PspGI CCWGG 5 cut(s) 117, 657, 856, 948, 1123
PspN4I GGNNCC 4 cut(s) 456, 534, 890, 1260
PspPI GGNCC 4 cut(s) 454, 518, 888, 1115
PsuI RGATCY 1 cut(s) 920
PvuI CGATCG 1 cut(s) 973
RsaI GTAC 5 cut(s) 309, 411, 872, 1061, 1207
RsaNI GTAC 5 cut(s) 308, 410, 871, 1060, 1206
SaqAI TTAA 7 cut(s) 183, 195, 327, 354, 606, 651, 780
SatI GCNGC 7 cut(s) 6, 19, 22, 25, 28, 299, 1286
Sau3AI GATC 5 cut(s) 920, 970, 1066, 1181, 1297
Sau96I GGNCC 4 cut(s) 454, 518, 888, 1115
ScaI AGTACT 1 cut(s) 1207
ScrFI CCNGG 5 cut(s) 119, 659, 858, 950, 1125
SduI GDGCHC 1 cut(s) 942
SfaNI GCATC 4 cut(s) 123, 176, 455, 682
SinI GGWCC 1 cut(s) 1115
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
SpeI ACTAGT 1 cut(s) 377
SphI GCATGC 1 cut(s) 593
SsiI CCGC 8 cut(s) 218, 233, 272, 284, 296, 299, 868, 913
SspI AATATT 1 cut(s) 150
SspMI CTAG 3 cut(s) 36, 378, 1303
StyD4I CCNGG 5 cut(s) 117, 657, 856, 948, 1123
StyI CCWWGG 2 cut(s) 450, 637
TaaI ACNGT 3 cut(s) 312, 362, 482
TaiI ACGT 1 cut(s) 75
TaqI TCGA 6 cut(s) 238, 555, 643, 840, 862, 1023
TaqII GACCGA 1 cut(s) 256
TatI WGTACW 2 cut(s) 409, 1205
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 3 cut(s) 467, 611, 761
Tru1I TTAA 7 cut(s) 183, 195, 327, 354, 606, 651, 780
Tru9I TTAA 7 cut(s) 183, 195, 327, 354, 606, 651, 780
TscAI CASTG 6 cut(s) 37, 282, 294, 726, 1193, 1287
TseFI GTSAC 2 cut(s) 105, 154
TseI GCWGC 6 cut(s) 5, 18, 21, 24, 27, 1285
Tsp45I GTSAC 2 cut(s) 105, 154
TspDTI ATGAA 3 cut(s) 490, 624, 1203
TspRI CASTG 6 cut(s) 37, 282, 294, 726, 1193, 1287
VneI GTGCAC 1 cut(s) 938
VpaK11BI GGWCC 1 cut(s) 1115
VspI ATTAAT 3 cut(s) 183, 327, 651
XagI CCTNNNNNAGG 1 cut(s) 861
XapI RAATTY 3 cut(s) 548, 1130, 1170
XceI RCATGY 2 cut(s) 593, 1057
XspI CTAG 3 cut(s) 36, 378, 1303
ZrmI AGTACT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.