Prupe.1G341400_v2.0.a1

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
32088194 .. 32093661
5468 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G341400.1

Sequence Viewer

Length: 1371 bp
ATGGATGGTGTGATATCAGCCAATGACCAGCAGGGCCTGGTCACTTCGTTTTTGGAGATCGCTGTGGGGCAGACTGCCGATACCGCCAGACAGTTTTTGCAGGCCACGGGCTGGCAGCTCGAGGAGGCAATTCAGCTGTTTTATGTGGGTAATGAAGCAGGGTCAATAGCTGCGGCGCAGCCTCCGACTGAAAATATTGAAAATTTGGCGGATCAAACTTCTGGTGCAAATGAGAATGTGGTACATCATGGTATAAATGAGAATGTTGGACAACTTGGTGAAGATGAGGTGCGCCCTCCTATGCCTGTTATAAGGGACGTTCTTTATGATGATGCGGCGCTCTATGGTTCACCAAGGGCAAGATTTTCACAACATGAATCGGGTTCTGTAATTGCATTCCGTAACTTTGAAGAGGAAATGAAGCATCCTGGGGTATGGGAATCAGGCCAAGGTGCTACATCCTCTGCAGAAACGGCCCGAGATAATCTTGCTTCCTTATATCGTCCTCCCTTTAAGCTACTGTTCCAGGGTTCCTTTGAAAAGGCAAAAGGCGCTGCTTCTGTCCAGGACAAATGGCTCCTGGTGAACTTGCAATCCACTAAAGAGTTCAGCTCTCATATGCTTAATCGAGACACCTGGGCCAATGAAGCTGTCTCTCAAACCATTATTACTAATTTTGTATTCTGGCAGACATATGATGATACAACTGAAGGCAGGAAGGTTTGCACATACTACAAGTTGGAATCTATGCCTGTAGTTCTCATTATTGACCCCATTACTGGGCAAAGAATGCGTTCATGGAATGGAATGGTTCAGCCAGAATGTTTGCTAGAGGATCTATTACCCTTCTTGGATAGTGGCCCCAGGGACCATCATGTAACTTTGTCCCATAAACGCCCAAGGGAAAGTTCTCTGCCTCAGCCACAGAAAACTAAAGTTGCAGACGAAACTAATGAAGAAGATGAGGAAGTGCAGCGCGCATTGGCAGCTTCGATGGAAGGCATGCAGGAGACAGGTGGGATATCCAAAGATAAAGATGAAATCATTACCGACAAGGAGGAAGAAAAATGCTTAGCCAAGACGCCTGCATATCCACCTTTGCCTGAAGAACCCAAGGGTGATAAGAACCTCCTTTGCAGGGTTGGAGTCCGTCTTCCAGATGGGCGCAGGGTGCAGCGGAATTTCCTTCGCACTGATCCAATTCAGATGTTGTGGTCATTCTGCTATTCCCAACTCAAGGAAGCTGAGACAAGGCGGTTTCGGTTGACTCAGGCAATCCCAGGAGCTTCAAAGAGTCTGGATTATGATTGTCAATCTACTTTTGAAGAGTCGGGGCTTGCCAACTCTATGGTCTCAGTTACTTGGGAATGA

Protein Analysis

457

Amino Acids

51.03

Weight (kDa)

4.83

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 111
AccII CGCG 1 cut(s) 978
AciI CCGC 6 cut(s) 84, 173, 209, 335, 1177, 1255
AclWI GGATC 3 cut(s) 219, 843, 1190
AcsI RAATTY 2 cut(s) 202, 1180
AcuI CTGAAG 2 cut(s) 729, 1125
AcyI GRCGYC 1 cut(s) 1082
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 5 cut(s) 111, 779, 780, 1138, 1237
AgsI TTSAA 5 cut(s) 200, 410, 539, 1290, 1325
AjnI CCWGG 8 cut(s) 36, 427, 525, 564, 579, 635, 863, 1279
AjuI GAANNNNNNNTTGG 2 cut(s) 892, 924
AloI GAACNNNNNNTCC 2 cut(s) 578, 610
AluBI AGCT 9 cut(s) 118, 136, 170, 517, 612, 650, 989, 1244, 1286
AluI AGCT 9 cut(s) 118, 136, 170, 517, 612, 650, 989, 1244, 1286
Alw26I GTCTC 5 cut(s) 624, 658, 1004, 1241, 1357
AlwI GGATC 3 cut(s) 219, 843, 1190
AlwNI CAGNNNCTG 1 cut(s) 37
Ama87I CYCGRG 2 cut(s) 119, 477
AoxI GGCC 6 cut(s) 34, 102, 445, 474, 639, 859
ApeKI GCWGC 7 cut(s) 115, 170, 178, 554, 973, 986, 1174
ApoI RAATTY 2 cut(s) 202, 1180
Asp700I GAANNNNTTC 1 cut(s) 793
AspLEI GCGC 7 cut(s) 178, 294, 340, 554, 978, 980, 1167
AspS9I GGNCC 5 cut(s) 34, 475, 639, 860, 868
AsuHPI GGTGA 4 cut(s) 290, 342, 595, 1130
AvaI CYCGRG 2 cut(s) 119, 477
AvaII GGWCC 1 cut(s) 868
BbsI GAAGAC 1 cut(s) 1145
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 7 cut(s) 127, 157, 190, 541, 985, 998, 1186
BccI CCATC 3 cut(s) 879, 988, 1154
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 8 cut(s) 38, 429, 527, 566, 581, 637, 865, 1281
BcoDI GTCTC 5 cut(s) 624, 658, 1004, 1241, 1357
BfaI CTAG 1 cut(s) 830
BfmI CTRYAG 2 cut(s) 465, 753
BfoI RGCGCY 2 cut(s) 341, 555
BisI GCNGC 9 cut(s) 116, 171, 174, 179, 336, 555, 974, 987, 1175
BlpI GCTNAGC 1 cut(s) 1072
BlsI GCNGC 9 cut(s) 117, 172, 175, 180, 337, 556, 975, 988, 1176
Bme1390I CCNGG 8 cut(s) 38, 429, 527, 566, 581, 637, 865, 1281
Bme18I GGWCC 1 cut(s) 868
BmeT110I CYCGRG 2 cut(s) 119, 477
BmgT120I GGNCC 5 cut(s) 34, 475, 639, 860, 868
BmiI GGNNCC 4 cut(s) 532, 578, 862, 869
BmrFI CCNGG 8 cut(s) 38, 429, 527, 566, 581, 637, 865, 1281
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 2 cut(s) 322, 433
BmuI ACTGGG 1 cut(s) 789
BpiI GAAGAC 1 cut(s) 1145
BplI GAGNNNNNCTC 2 cut(s) 596, 628
Bpu10I CCTNAGC 1 cut(s) 918
Bpu1102I GCTNAGC 1 cut(s) 1072
BpuEI CTTGAG 1 cut(s) 1220
BsaHI GRCGYC 1 cut(s) 1082
BsaI GGTCTC 1 cut(s) 1357
Bsc4I CCNNNNNNNGG 5 cut(s) 111, 779, 780, 1138, 1237
Bse1I ACTGG 1 cut(s) 784
BseBI CCWGG 8 cut(s) 38, 429, 527, 566, 581, 637, 865, 1281
BseGI GGATG 3 cut(s) 10, 424, 458
BseLI CCNNNNNNNGG 5 cut(s) 111, 779, 780, 1138, 1237
BseMII CTCAG 4 cut(s) 932, 1236, 1283, 1368
BseNI ACTGG 1 cut(s) 784
BsePI GCGCGC 1 cut(s) 976
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 7 cut(s) 127, 157, 190, 541, 985, 998, 1186
BsgI GTGCAG 2 cut(s) 992, 1193
Bsh1236I CGCG 1 cut(s) 978
BshFI GGCC 6 cut(s) 36, 104, 447, 476, 641, 861
BsiHKCI CYCGRG 2 cut(s) 119, 477
BslFI GGGAC 3 cut(s) 329, 871, 881
BslI CCNNNNNNNGG 5 cut(s) 111, 779, 780, 1138, 1237
BsmAI GTCTC 5 cut(s) 624, 658, 1004, 1241, 1357
BsmFI GGGAC 3 cut(s) 329, 871, 881
BsmI GAATGC 2 cut(s) 395, 795
BsnI GGCC 6 cut(s) 36, 104, 447, 476, 641, 861
Bso31I GGTCTC 1 cut(s) 1357
BsoBI CYCGRG 2 cut(s) 119, 477
Bsp143I GATC 4 cut(s) 57, 211, 835, 1195
Bsp1720I GCTNAGC 1 cut(s) 1072
BspACI CCGC 6 cut(s) 84, 173, 209, 335, 1177, 1255
BspANI GGCC 6 cut(s) 36, 104, 447, 476, 641, 861
BspCNI CTCAG 4 cut(s) 931, 1237, 1282, 1367
BspFNI CGCG 1 cut(s) 978
BspLI GGNNCC 4 cut(s) 532, 578, 862, 869
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 3 cut(s) 219, 843, 1190
BspTNI GGTCTC 1 cut(s) 1357
BsrI ACTGG 1 cut(s) 784
BssHII GCGCGC 1 cut(s) 976
BssMI GATC 4 cut(s) 57, 211, 835, 1195
BssNI GRCGYC 1 cut(s) 1082
BssT1I CCWWGG 4 cut(s) 353, 448, 899, 1113
Bst2UI CCWGG 8 cut(s) 38, 429, 527, 566, 581, 637, 865, 1281
Bst4CI ACNGT 2 cut(s) 93, 522
Bst6I CTCTTC 2 cut(s) 405, 1320
BstACI GRCGYC 1 cut(s) 1082
BstAPI GCANNNNNTGC 1 cut(s) 790
BstC8I GCNNGC 6 cut(s) 102, 113, 978, 1004, 1086, 1338
BstDEI CTNAG 5 cut(s) 918, 1072, 1245, 1269, 1354
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 3 cut(s) 10, 424, 458
BstFNI CGCG 1 cut(s) 978
BstH2I RGCGCY 2 cut(s) 341, 555
BstHHI GCGC 7 cut(s) 178, 294, 340, 554, 978, 980, 1167
BstKTI GATC 4 cut(s) 60, 214, 838, 1198
BstMAI GTCTC 5 cut(s) 624, 658, 1004, 1241, 1357
BstMBI GATC 4 cut(s) 57, 211, 835, 1195
BstMWI GCNNNNNNNGC 7 cut(s) 83, 473, 551, 647, 790, 986, 1171
BstNI CCWGG 8 cut(s) 38, 429, 527, 566, 581, 637, 865, 1281
BstNSI RCATGY 1 cut(s) 1006
BstSCI CCNGG 8 cut(s) 36, 427, 525, 564, 579, 635, 863, 1279
BstSFI CTRYAG 2 cut(s) 465, 753
BstUI CGCG 1 cut(s) 978
BstV1I GCAGC 7 cut(s) 127, 157, 190, 541, 985, 998, 1186
BstV2I GAAGAC 1 cut(s) 1145
BstX2I RGATCY 1 cut(s) 835
BstXI CCANNNNNNTGG 1 cut(s) 1348
BstYI RGATCY 1 cut(s) 835
BsuRI GGCC 6 cut(s) 36, 104, 447, 476, 641, 861
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 3 cut(s) 10, 424, 458
BtsIMutI CAGTG 1 cut(s) 1191
Cac8I GCNNGC 6 cut(s) 102, 113, 978, 1004, 1086, 1338
CaiI CAGNNNCTG 1 cut(s) 37
CfoI GCGC 7 cut(s) 178, 294, 340, 554, 978, 980, 1167
Cfr13I GGNCC 5 cut(s) 34, 475, 639, 860, 868
CseI GACGC 1 cut(s) 1090
Csp6I GTAC 1 cut(s) 242
CviAII CATG 5 cut(s) 248, 374, 798, 875, 1003
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 5 cut(s) 918, 1072, 1245, 1269, 1354
DpnI GATC 4 cut(s) 59, 213, 837, 1197
DpnII GATC 4 cut(s) 57, 211, 835, 1195
Eam1104I CTCTTC 2 cut(s) 405, 1320
EarI CTCTTC 2 cut(s) 405, 1320
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 4 cut(s) 353, 448, 899, 1113
Eco31I GGTCTC 1 cut(s) 1357
Eco32I GATATC 2 cut(s) 15, 1023
Eco47I GGWCC 1 cut(s) 868
Eco57I CTGAAG 2 cut(s) 729, 1125
Eco88I CYCGRG 2 cut(s) 119, 477
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 8 cut(s) 36, 427, 525, 564, 579, 635, 863, 1279
EcoRV GATATC 2 cut(s) 15, 1023
EcoT14I CCWWGG 4 cut(s) 353, 448, 899, 1113
ErhI CCWWGG 4 cut(s) 353, 448, 899, 1113
FaeI CATG 5 cut(s) 251, 377, 801, 878, 1006
FaqI GGGAC 3 cut(s) 329, 871, 881
FatI CATG 5 cut(s) 247, 373, 797, 874, 1002
FauNDI CATATG 2 cut(s) 618, 694
Fnu4HI GCNGC 9 cut(s) 116, 171, 174, 179, 336, 555, 974, 987, 1175
FokI GGATG 3 cut(s) 17, 411, 445
Fsp4HI GCNGC 9 cut(s) 116, 171, 174, 179, 336, 555, 974, 987, 1175
FspBI CTAG 1 cut(s) 830
GlaI GCGC 7 cut(s) 177, 293, 339, 553, 977, 979, 1166
GluI GCNGC 9 cut(s) 116, 171, 174, 179, 336, 555, 974, 987, 1175
HaeII RGCGCY 2 cut(s) 341, 555
HaeIII GGCC 6 cut(s) 36, 104, 447, 476, 641, 861
HgaI GACGC 1 cut(s) 1090
HhaI GCGC 7 cut(s) 178, 294, 340, 554, 978, 980, 1167
Hin1I GRCGYC 1 cut(s) 1082
Hin1II CATG 5 cut(s) 251, 377, 801, 878, 1006
Hin6I GCGC 7 cut(s) 176, 292, 338, 552, 976, 978, 1165
HinP1I GCGC 7 cut(s) 176, 292, 338, 552, 976, 978, 1165
HincII GTYRAC 1 cut(s) 1266
HindII GTYRAC 1 cut(s) 1266
HinfI GANTC 7 cut(s) 377, 440, 743, 1146, 1267, 1294, 1328
HphI GGTGA 4 cut(s) 290, 342, 595, 1130
Hpy166II GTNNAC 3 cut(s) 350, 586, 1266
Hpy188I TCNGA 2 cut(s) 186, 1206
Hpy188III TCNNGA 3 cut(s) 629, 1157, 1298
Hpy8I GTNNAC 3 cut(s) 350, 586, 1266
HpyAV CCTTC 5 cut(s) 704, 712, 856, 992, 1196
HpyCH4III ACNGT 2 cut(s) 93, 522
HpyCH4IV ACGT 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 473, 551, 647, 790, 986, 1171
HpyF3I CTNAG 5 cut(s) 918, 1072, 1245, 1269, 1354
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 1082
Hsp92II CATG 5 cut(s) 251, 377, 801, 878, 1006
HspAI GCGC 7 cut(s) 176, 292, 338, 552, 976, 978, 1165
Kzo9I GATC 4 cut(s) 57, 211, 835, 1195
LmnI GCTCC 2 cut(s) 582, 1283
Lsp1109I GCAGC 7 cut(s) 127, 157, 190, 541, 985, 998, 1186
LweI GCATC 2 cut(s) 322, 433
MaeI CTAG 1 cut(s) 830
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 4 cut(s) 40, 401, 877, 1357
MalI GATC 4 cut(s) 59, 213, 837, 1197
MboI GATC 4 cut(s) 57, 211, 835, 1195
MboII GAAGA 8 cut(s) 293, 422, 968, 971, 1073, 1118, 1145, 1337
MflI RGATCY 1 cut(s) 835
MluCI AATT 6 cut(s) 129, 202, 390, 673, 1180, 1200
MlyI GAGTC 4 cut(s) 1155, 1261, 1303, 1337
MmeI TCCRAC 4 cut(s) 209, 247, 720, 1123
MroXI GAANNNNTTC 1 cut(s) 793
MseI TTAA 2 cut(s) 513, 624
MspA1I CMGCKG 2 cut(s) 136, 1177
MspR9I CCNGG 8 cut(s) 38, 429, 527, 566, 581, 637, 865, 1281
Mva1269I GAATGC 2 cut(s) 395, 795
MvaI CCWGG 8 cut(s) 38, 429, 527, 566, 581, 637, 865, 1281
MvnI CGCG 1 cut(s) 978
MwoI GCNNNNNNNGC 7 cut(s) 83, 473, 551, 647, 790, 986, 1171
NdeI CATATG 2 cut(s) 618, 694
NdeII GATC 4 cut(s) 57, 211, 835, 1195
NlaIII CATG 5 cut(s) 251, 377, 801, 878, 1006
NlaIV GGNNCC 4 cut(s) 532, 578, 862, 869
NmuCI GTSAC 1 cut(s) 40
NspI RCATGY 1 cut(s) 1006
PaeI GCATGC 1 cut(s) 1006
PaeR7I CTCGAG 1 cut(s) 119
PasI CCCWGGG 1 cut(s) 864
PauI GCGCGC 1 cut(s) 976
PctI GAATGC 2 cut(s) 395, 795
PdmI GAANNNNTTC 1 cut(s) 793
PfeI GAWTC 3 cut(s) 377, 440, 743
PflMI CCANNNNNTGG 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 9 cut(s) 117, 172, 175, 180, 337, 556, 975, 988, 1176
PleI GAGTC 4 cut(s) 1154, 1261, 1302, 1336
PpsI GAGTC 4 cut(s) 1154, 1261, 1302, 1336
PsiI TTATAA 1 cut(s) 311
Psp6I CCWGG 8 cut(s) 36, 427, 525, 564, 579, 635, 863, 1279
PspGI CCWGG 8 cut(s) 36, 427, 525, 564, 579, 635, 863, 1279
PspN4I GGNNCC 4 cut(s) 532, 578, 862, 869
PspPI GGNCC 5 cut(s) 34, 475, 639, 860, 868
PspXI VCTCGAGB 1 cut(s) 119
PstI CTGCAG 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 835
PteI GCGCGC 1 cut(s) 976
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 513, 624
SatI GCNGC 9 cut(s) 116, 171, 174, 179, 336, 555, 974, 987, 1175
Sau3AI GATC 4 cut(s) 57, 211, 835, 1195
Sau96I GGNCC 5 cut(s) 34, 475, 639, 860, 868
SchI GAGTC 4 cut(s) 1155, 1261, 1303, 1337
ScrFI CCNGG 8 cut(s) 38, 429, 527, 566, 581, 637, 865, 1281
SfaNI GCATC 2 cut(s) 322, 433
SfcI CTRYAG 2 cut(s) 465, 753
Sfr274I CTCGAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 868
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 119, 1235
SmoI CTYRAG 2 cut(s) 119, 1235
SphI GCATGC 1 cut(s) 1006
Sse9I AATT 6 cut(s) 129, 202, 390, 673, 1180, 1200
SsiI CCGC 6 cut(s) 84, 173, 209, 335, 1177, 1255
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 830
StyD4I CCNGG 8 cut(s) 36, 427, 525, 564, 579, 635, 863, 1279
StyI CCWWGG 4 cut(s) 353, 448, 899, 1113
TaaI ACNGT 2 cut(s) 93, 522
TaiI ACGT 1 cut(s) 321
TaqI TCGA 3 cut(s) 120, 628, 992
TasI AATT 6 cut(s) 129, 202, 390, 673, 1180, 1200
TauI GCSGC 2 cut(s) 176, 338
TfiI GAWTC 3 cut(s) 377, 440, 743
Tru1I TTAA 2 cut(s) 513, 624
Tru9I TTAA 2 cut(s) 513, 624
TscAI CASTG 1 cut(s) 1198
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 7 cut(s) 115, 170, 178, 554, 973, 986, 1174
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 7 cut(s) 168, 390, 434, 660, 786, 969, 1053
TspGWI ACGGA 2 cut(s) 389, 1139
TspRI CASTG 1 cut(s) 1198
Van91I CCANNNNNTGG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 868
XapI RAATTY 2 cut(s) 202, 1180
XceI RCATGY 1 cut(s) 1006
XhoI CTCGAG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 793
XspI CTAG 1 cut(s) 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.