UBX domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14570 AT1G14570 AT1G14570 AT1G14570 |
| fragaria_vesca | FvH4_4g36080 FvH4_4g36080 FvH4_4g36080 FvH4_4g36080 |
| malus_domestica | MD13G1012500.v1.1 MD16G1009200.v1.1 |
| prunus_persica | Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1 |
| pyrus_communis | pycom13g01000 pycom16g00890 |
| rosa_chinensis | RchiOBHm_Chr4g0445701 |
| rosa_laevigata | RLG00000005715 |
| rosa_multiflora | Rmu_sc0000961.1_g000019 Rmu_sc0002957.1_g000001 Rmu_sc0003637.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00386190 |
| rosa_rugosa | Rorug03G0328200 Rorug04G0365000 |
| rosa_samantha | Rh4AG425900 Rh4CG452900 Rh4DG434100 |
| rosa_wichuraiana | Rw4G036480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 311 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 111 |
| AccII | CGCG | 1 cut(s) | 978 |
| AciI | CCGC | 6 cut(s) | 84, 173, 209, 335, 1177, 1255 |
| AclWI | GGATC | 3 cut(s) | 219, 843, 1190 |
| AcsI | RAATTY | 2 cut(s) | 202, 1180 |
| AcuI | CTGAAG | 2 cut(s) | 729, 1125 |
| AcyI | GRCGYC | 1 cut(s) | 1082 |
| AfaI | GTAC | 1 cut(s) | 243 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 111, 779, 780, 1138, 1237 |
| AgsI | TTSAA | 5 cut(s) | 200, 410, 539, 1290, 1325 |
| AjnI | CCWGG | 8 cut(s) | 36, 427, 525, 564, 579, 635, 863, 1279 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 892, 924 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 578, 610 |
| AluBI | AGCT | 9 cut(s) | 118, 136, 170, 517, 612, 650, 989, 1244, 1286 |
| AluI | AGCT | 9 cut(s) | 118, 136, 170, 517, 612, 650, 989, 1244, 1286 |
| Alw26I | GTCTC | 5 cut(s) | 624, 658, 1004, 1241, 1357 |
| AlwI | GGATC | 3 cut(s) | 219, 843, 1190 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 37 |
| Ama87I | CYCGRG | 2 cut(s) | 119, 477 |
| AoxI | GGCC | 6 cut(s) | 34, 102, 445, 474, 639, 859 |
| ApeKI | GCWGC | 7 cut(s) | 115, 170, 178, 554, 973, 986, 1174 |
| ApoI | RAATTY | 2 cut(s) | 202, 1180 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 793 |
| AspLEI | GCGC | 7 cut(s) | 178, 294, 340, 554, 978, 980, 1167 |
| AspS9I | GGNCC | 5 cut(s) | 34, 475, 639, 860, 868 |
| AsuHPI | GGTGA | 4 cut(s) | 290, 342, 595, 1130 |
| AvaI | CYCGRG | 2 cut(s) | 119, 477 |
| AvaII | GGWCC | 1 cut(s) | 868 |
| BbsI | GAAGAC | 1 cut(s) | 1145 |
| BbvCI | CCTCAGC | 1 cut(s) | 918 |
| BbvI | GCAGC | 7 cut(s) | 127, 157, 190, 541, 985, 998, 1186 |
| BccI | CCATC | 3 cut(s) | 879, 988, 1154 |
| BceAI | ACGGC | 1 cut(s) | 489 |
| BciT130I | CCWGG | 8 cut(s) | 38, 429, 527, 566, 581, 637, 865, 1281 |
| BcoDI | GTCTC | 5 cut(s) | 624, 658, 1004, 1241, 1357 |
| BfaI | CTAG | 1 cut(s) | 830 |
| BfmI | CTRYAG | 2 cut(s) | 465, 753 |
| BfoI | RGCGCY | 2 cut(s) | 341, 555 |
| BisI | GCNGC | 9 cut(s) | 116, 171, 174, 179, 336, 555, 974, 987, 1175 |
| BlpI | GCTNAGC | 1 cut(s) | 1072 |
| BlsI | GCNGC | 9 cut(s) | 117, 172, 175, 180, 337, 556, 975, 988, 1176 |
| Bme1390I | CCNGG | 8 cut(s) | 38, 429, 527, 566, 581, 637, 865, 1281 |
| Bme18I | GGWCC | 1 cut(s) | 868 |
| BmeT110I | CYCGRG | 2 cut(s) | 119, 477 |
| BmgT120I | GGNCC | 5 cut(s) | 34, 475, 639, 860, 868 |
| BmiI | GGNNCC | 4 cut(s) | 532, 578, 862, 869 |
| BmrFI | CCNGG | 8 cut(s) | 38, 429, 527, 566, 581, 637, 865, 1281 |
| BmrI | ACTGGG | 1 cut(s) | 789 |
| BmsI | GCATC | 2 cut(s) | 322, 433 |
| BmuI | ACTGGG | 1 cut(s) | 789 |
| BpiI | GAAGAC | 1 cut(s) | 1145 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 596, 628 |
| Bpu10I | CCTNAGC | 1 cut(s) | 918 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1072 |
| BpuEI | CTTGAG | 1 cut(s) | 1220 |
| BsaHI | GRCGYC | 1 cut(s) | 1082 |
| BsaI | GGTCTC | 1 cut(s) | 1357 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 111, 779, 780, 1138, 1237 |
| Bse1I | ACTGG | 1 cut(s) | 784 |
| BseBI | CCWGG | 8 cut(s) | 38, 429, 527, 566, 581, 637, 865, 1281 |
| BseGI | GGATG | 3 cut(s) | 10, 424, 458 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 111, 779, 780, 1138, 1237 |
| BseMII | CTCAG | 4 cut(s) | 932, 1236, 1283, 1368 |
| BseNI | ACTGG | 1 cut(s) | 784 |
| BsePI | GCGCGC | 1 cut(s) | 976 |
| BseRI | GAGGAG | 1 cut(s) | 137 |
| BseXI | GCAGC | 7 cut(s) | 127, 157, 190, 541, 985, 998, 1186 |
| BsgI | GTGCAG | 2 cut(s) | 992, 1193 |
| Bsh1236I | CGCG | 1 cut(s) | 978 |
| BshFI | GGCC | 6 cut(s) | 36, 104, 447, 476, 641, 861 |
| BsiHKCI | CYCGRG | 2 cut(s) | 119, 477 |
| BslFI | GGGAC | 3 cut(s) | 329, 871, 881 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 111, 779, 780, 1138, 1237 |
| BsmAI | GTCTC | 5 cut(s) | 624, 658, 1004, 1241, 1357 |
| BsmFI | GGGAC | 3 cut(s) | 329, 871, 881 |
| BsmI | GAATGC | 2 cut(s) | 395, 795 |
| BsnI | GGCC | 6 cut(s) | 36, 104, 447, 476, 641, 861 |
| Bso31I | GGTCTC | 1 cut(s) | 1357 |
| BsoBI | CYCGRG | 2 cut(s) | 119, 477 |
| Bsp143I | GATC | 4 cut(s) | 57, 211, 835, 1195 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1072 |
| BspACI | CCGC | 6 cut(s) | 84, 173, 209, 335, 1177, 1255 |
| BspANI | GGCC | 6 cut(s) | 36, 104, 447, 476, 641, 861 |
| BspCNI | CTCAG | 4 cut(s) | 931, 1237, 1282, 1367 |
| BspFNI | CGCG | 1 cut(s) | 978 |
| BspLI | GGNNCC | 4 cut(s) | 532, 578, 862, 869 |
| BspMAI | CTGCAG | 1 cut(s) | 469 |
| BspPI | GGATC | 3 cut(s) | 219, 843, 1190 |
| BspTNI | GGTCTC | 1 cut(s) | 1357 |
| BsrI | ACTGG | 1 cut(s) | 784 |
| BssHII | GCGCGC | 1 cut(s) | 976 |
| BssMI | GATC | 4 cut(s) | 57, 211, 835, 1195 |
| BssNI | GRCGYC | 1 cut(s) | 1082 |
| BssT1I | CCWWGG | 4 cut(s) | 353, 448, 899, 1113 |
| Bst2UI | CCWGG | 8 cut(s) | 38, 429, 527, 566, 581, 637, 865, 1281 |
| Bst4CI | ACNGT | 2 cut(s) | 93, 522 |
| Bst6I | CTCTTC | 2 cut(s) | 405, 1320 |
| BstACI | GRCGYC | 1 cut(s) | 1082 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 790 |
| BstC8I | GCNNGC | 6 cut(s) | 102, 113, 978, 1004, 1086, 1338 |
| BstDEI | CTNAG | 5 cut(s) | 918, 1072, 1245, 1269, 1354 |
| BstDSI | CCRYGG | 1 cut(s) | 105 |
| BstF5I | GGATG | 3 cut(s) | 10, 424, 458 |
| BstFNI | CGCG | 1 cut(s) | 978 |
| BstH2I | RGCGCY | 2 cut(s) | 341, 555 |
| BstHHI | GCGC | 7 cut(s) | 178, 294, 340, 554, 978, 980, 1167 |
| BstKTI | GATC | 4 cut(s) | 60, 214, 838, 1198 |
| BstMAI | GTCTC | 5 cut(s) | 624, 658, 1004, 1241, 1357 |
| BstMBI | GATC | 4 cut(s) | 57, 211, 835, 1195 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 83, 473, 551, 647, 790, 986, 1171 |
| BstNI | CCWGG | 8 cut(s) | 38, 429, 527, 566, 581, 637, 865, 1281 |
| BstNSI | RCATGY | 1 cut(s) | 1006 |
| BstSCI | CCNGG | 8 cut(s) | 36, 427, 525, 564, 579, 635, 863, 1279 |
| BstSFI | CTRYAG | 2 cut(s) | 465, 753 |
| BstUI | CGCG | 1 cut(s) | 978 |
| BstV1I | GCAGC | 7 cut(s) | 127, 157, 190, 541, 985, 998, 1186 |
| BstV2I | GAAGAC | 1 cut(s) | 1145 |
| BstX2I | RGATCY | 1 cut(s) | 835 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1348 |
| BstYI | RGATCY | 1 cut(s) | 835 |
| BsuRI | GGCC | 6 cut(s) | 36, 104, 447, 476, 641, 861 |
| BtgI | CCRYGG | 1 cut(s) | 105 |
| BtsCI | GGATG | 3 cut(s) | 10, 424, 458 |
| BtsIMutI | CAGTG | 1 cut(s) | 1191 |
| Cac8I | GCNNGC | 6 cut(s) | 102, 113, 978, 1004, 1086, 1338 |
| CaiI | CAGNNNCTG | 1 cut(s) | 37 |
| CfoI | GCGC | 7 cut(s) | 178, 294, 340, 554, 978, 980, 1167 |
| Cfr13I | GGNCC | 5 cut(s) | 34, 475, 639, 860, 868 |
| CseI | GACGC | 1 cut(s) | 1090 |
| Csp6I | GTAC | 1 cut(s) | 242 |
| CviAII | CATG | 5 cut(s) | 248, 374, 798, 875, 1003 |
| CviQI | GTAC | 1 cut(s) | 242 |
| DdeI | CTNAG | 5 cut(s) | 918, 1072, 1245, 1269, 1354 |
| DpnI | GATC | 4 cut(s) | 59, 213, 837, 1197 |
| DpnII | GATC | 4 cut(s) | 57, 211, 835, 1195 |
| Eam1104I | CTCTTC | 2 cut(s) | 405, 1320 |
| EarI | CTCTTC | 2 cut(s) | 405, 1320 |
| EciI | GGCGGA | 1 cut(s) | 224 |
| Eco130I | CCWWGG | 4 cut(s) | 353, 448, 899, 1113 |
| Eco31I | GGTCTC | 1 cut(s) | 1357 |
| Eco32I | GATATC | 2 cut(s) | 15, 1023 |
| Eco47I | GGWCC | 1 cut(s) | 868 |
| Eco57I | CTGAAG | 2 cut(s) | 729, 1125 |
| Eco88I | CYCGRG | 2 cut(s) | 119, 477 |
| EcoO109I | RGGNCCY | 1 cut(s) | 34 |
| EcoRII | CCWGG | 8 cut(s) | 36, 427, 525, 564, 579, 635, 863, 1279 |
| EcoRV | GATATC | 2 cut(s) | 15, 1023 |
| EcoT14I | CCWWGG | 4 cut(s) | 353, 448, 899, 1113 |
| ErhI | CCWWGG | 4 cut(s) | 353, 448, 899, 1113 |
| FaeI | CATG | 5 cut(s) | 251, 377, 801, 878, 1006 |
| FaqI | GGGAC | 3 cut(s) | 329, 871, 881 |
| FatI | CATG | 5 cut(s) | 247, 373, 797, 874, 1002 |
| FauNDI | CATATG | 2 cut(s) | 618, 694 |
| Fnu4HI | GCNGC | 9 cut(s) | 116, 171, 174, 179, 336, 555, 974, 987, 1175 |
| FokI | GGATG | 3 cut(s) | 17, 411, 445 |
| Fsp4HI | GCNGC | 9 cut(s) | 116, 171, 174, 179, 336, 555, 974, 987, 1175 |
| FspBI | CTAG | 1 cut(s) | 830 |
| GlaI | GCGC | 7 cut(s) | 177, 293, 339, 553, 977, 979, 1166 |
| GluI | GCNGC | 9 cut(s) | 116, 171, 174, 179, 336, 555, 974, 987, 1175 |
| HaeII | RGCGCY | 2 cut(s) | 341, 555 |
| HaeIII | GGCC | 6 cut(s) | 36, 104, 447, 476, 641, 861 |
| HgaI | GACGC | 1 cut(s) | 1090 |
| HhaI | GCGC | 7 cut(s) | 178, 294, 340, 554, 978, 980, 1167 |
| Hin1I | GRCGYC | 1 cut(s) | 1082 |
| Hin1II | CATG | 5 cut(s) | 251, 377, 801, 878, 1006 |
| Hin6I | GCGC | 7 cut(s) | 176, 292, 338, 552, 976, 978, 1165 |
| HinP1I | GCGC | 7 cut(s) | 176, 292, 338, 552, 976, 978, 1165 |
| HincII | GTYRAC | 1 cut(s) | 1266 |
| HindII | GTYRAC | 1 cut(s) | 1266 |
| HinfI | GANTC | 7 cut(s) | 377, 440, 743, 1146, 1267, 1294, 1328 |
| HphI | GGTGA | 4 cut(s) | 290, 342, 595, 1130 |
| Hpy166II | GTNNAC | 3 cut(s) | 350, 586, 1266 |
| Hpy188I | TCNGA | 2 cut(s) | 186, 1206 |
| Hpy188III | TCNNGA | 3 cut(s) | 629, 1157, 1298 |
| Hpy8I | GTNNAC | 3 cut(s) | 350, 586, 1266 |
| HpyAV | CCTTC | 5 cut(s) | 704, 712, 856, 992, 1196 |
| HpyCH4III | ACNGT | 2 cut(s) | 93, 522 |
| HpyCH4IV | ACGT | 1 cut(s) | 318 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 83, 473, 551, 647, 790, 986, 1171 |
| HpyF3I | CTNAG | 5 cut(s) | 918, 1072, 1245, 1269, 1354 |
| HpySE526I | ACGT | 1 cut(s) | 318 |
| Hsp92I | GRCGYC | 1 cut(s) | 1082 |
| Hsp92II | CATG | 5 cut(s) | 251, 377, 801, 878, 1006 |
| HspAI | GCGC | 7 cut(s) | 176, 292, 338, 552, 976, 978, 1165 |
| Kzo9I | GATC | 4 cut(s) | 57, 211, 835, 1195 |
| LmnI | GCTCC | 2 cut(s) | 582, 1283 |
| Lsp1109I | GCAGC | 7 cut(s) | 127, 157, 190, 541, 985, 998, 1186 |
| LweI | GCATC | 2 cut(s) | 322, 433 |
| MaeI | CTAG | 1 cut(s) | 830 |
| MaeII | ACGT | 1 cut(s) | 318 |
| MaeIII | GTNAC | 4 cut(s) | 40, 401, 877, 1357 |
| MalI | GATC | 4 cut(s) | 59, 213, 837, 1197 |
| MboI | GATC | 4 cut(s) | 57, 211, 835, 1195 |
| MboII | GAAGA | 8 cut(s) | 293, 422, 968, 971, 1073, 1118, 1145, 1337 |
| MflI | RGATCY | 1 cut(s) | 835 |
| MluCI | AATT | 6 cut(s) | 129, 202, 390, 673, 1180, 1200 |
| MlyI | GAGTC | 4 cut(s) | 1155, 1261, 1303, 1337 |
| MmeI | TCCRAC | 4 cut(s) | 209, 247, 720, 1123 |
| MroXI | GAANNNNTTC | 1 cut(s) | 793 |
| MseI | TTAA | 2 cut(s) | 513, 624 |
| MspA1I | CMGCKG | 2 cut(s) | 136, 1177 |
| MspR9I | CCNGG | 8 cut(s) | 38, 429, 527, 566, 581, 637, 865, 1281 |
| Mva1269I | GAATGC | 2 cut(s) | 395, 795 |
| MvaI | CCWGG | 8 cut(s) | 38, 429, 527, 566, 581, 637, 865, 1281 |
| MvnI | CGCG | 1 cut(s) | 978 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 83, 473, 551, 647, 790, 986, 1171 |
| NdeI | CATATG | 2 cut(s) | 618, 694 |
| NdeII | GATC | 4 cut(s) | 57, 211, 835, 1195 |
| NlaIII | CATG | 5 cut(s) | 251, 377, 801, 878, 1006 |
| NlaIV | GGNNCC | 4 cut(s) | 532, 578, 862, 869 |
| NmuCI | GTSAC | 1 cut(s) | 40 |
| NspI | RCATGY | 1 cut(s) | 1006 |
| PaeI | GCATGC | 1 cut(s) | 1006 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PasI | CCCWGGG | 1 cut(s) | 864 |
| PauI | GCGCGC | 1 cut(s) | 976 |
| PctI | GAATGC | 2 cut(s) | 395, 795 |
| PdmI | GAANNNNTTC | 1 cut(s) | 793 |
| PfeI | GAWTC | 3 cut(s) | 377, 440, 743 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 111 |
| PfoI | TCCNGGA | 1 cut(s) | 564 |
| PkrI | GCNGC | 9 cut(s) | 117, 172, 175, 180, 337, 556, 975, 988, 1176 |
| PleI | GAGTC | 4 cut(s) | 1154, 1261, 1302, 1336 |
| PpsI | GAGTC | 4 cut(s) | 1154, 1261, 1302, 1336 |
| PsiI | TTATAA | 1 cut(s) | 311 |
| Psp6I | CCWGG | 8 cut(s) | 36, 427, 525, 564, 579, 635, 863, 1279 |
| PspGI | CCWGG | 8 cut(s) | 36, 427, 525, 564, 579, 635, 863, 1279 |
| PspN4I | GGNNCC | 4 cut(s) | 532, 578, 862, 869 |
| PspPI | GGNCC | 5 cut(s) | 34, 475, 639, 860, 868 |
| PspXI | VCTCGAGB | 1 cut(s) | 119 |
| PstI | CTGCAG | 1 cut(s) | 469 |
| PstNI | CAGNNNCTG | 1 cut(s) | 37 |
| PsuI | RGATCY | 1 cut(s) | 835 |
| PteI | GCGCGC | 1 cut(s) | 976 |
| PvuII | CAGCTG | 1 cut(s) | 136 |
| RsaI | GTAC | 1 cut(s) | 243 |
| RsaNI | GTAC | 1 cut(s) | 242 |
| SaqAI | TTAA | 2 cut(s) | 513, 624 |
| SatI | GCNGC | 9 cut(s) | 116, 171, 174, 179, 336, 555, 974, 987, 1175 |
| Sau3AI | GATC | 4 cut(s) | 57, 211, 835, 1195 |
| Sau96I | GGNCC | 5 cut(s) | 34, 475, 639, 860, 868 |
| SchI | GAGTC | 4 cut(s) | 1155, 1261, 1303, 1337 |
| ScrFI | CCNGG | 8 cut(s) | 38, 429, 527, 566, 581, 637, 865, 1281 |
| SfaNI | GCATC | 2 cut(s) | 322, 433 |
| SfcI | CTRYAG | 2 cut(s) | 465, 753 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 868 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmlI | CTYRAG | 2 cut(s) | 119, 1235 |
| SmoI | CTYRAG | 2 cut(s) | 119, 1235 |
| SphI | GCATGC | 1 cut(s) | 1006 |
| Sse9I | AATT | 6 cut(s) | 129, 202, 390, 673, 1180, 1200 |
| SsiI | CCGC | 6 cut(s) | 84, 173, 209, 335, 1177, 1255 |
| SspI | AATATT | 1 cut(s) | 196 |
| SspMI | CTAG | 1 cut(s) | 830 |
| StyD4I | CCNGG | 8 cut(s) | 36, 427, 525, 564, 579, 635, 863, 1279 |
| StyI | CCWWGG | 4 cut(s) | 353, 448, 899, 1113 |
| TaaI | ACNGT | 2 cut(s) | 93, 522 |
| TaiI | ACGT | 1 cut(s) | 321 |
| TaqI | TCGA | 3 cut(s) | 120, 628, 992 |
| TasI | AATT | 6 cut(s) | 129, 202, 390, 673, 1180, 1200 |
| TauI | GCSGC | 2 cut(s) | 176, 338 |
| TfiI | GAWTC | 3 cut(s) | 377, 440, 743 |
| Tru1I | TTAA | 2 cut(s) | 513, 624 |
| Tru9I | TTAA | 2 cut(s) | 513, 624 |
| TscAI | CASTG | 1 cut(s) | 1198 |
| TseFI | GTSAC | 1 cut(s) | 40 |
| TseI | GCWGC | 7 cut(s) | 115, 170, 178, 554, 973, 986, 1174 |
| Tsp45I | GTSAC | 1 cut(s) | 40 |
| TspDTI | ATGAA | 7 cut(s) | 168, 390, 434, 660, 786, 969, 1053 |
| TspGWI | ACGGA | 2 cut(s) | 389, 1139 |
| TspRI | CASTG | 1 cut(s) | 1198 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 111 |
| VpaK11BI | GGWCC | 1 cut(s) | 868 |
| XapI | RAATTY | 2 cut(s) | 202, 1180 |
| XceI | RCATGY | 1 cut(s) | 1006 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 793 |
| XspI | CTAG | 1 cut(s) | 830 |