Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006223

Physical Location & Seq

Genomic Coordinates Forward (+)

53694710 .. 53696391

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0365000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCCACCGTTACTACGACACCTCAGCTTCTGCTCTGCACCAACCGCGCCATTTTCGCAACCCGAACCCGATTCCGCAAACCCGACCCTGTAGCATTGGAAGCCCAAAAATGGTCTTCACAGTCACTCAGGGTCTCAAAGTTGAAGCCACTAGTTGTGTGCCACGCGGCGCGTCGGAAACCCACCACCGCTTTCCAACCGGAGACTGAAAATGAAAATTCCCGGCTACTGTTTCAGACTAGTCTCTGGGTTGCTGAAGCAGTCTACATTCTGTGGCTGTTTCTTCTTCCTTACGCTCCTGGAGACCCAGTGTGGGCTATAAGTTCAGATACAGTGAATTCTCTTCTGGGCCTCTCTTTGAACTTCTTCTTTGTCTTGCCTCTTTTCAACTCTGTTGGTATTAATTTTATTGATGCCCCAGTTCTTCACCCGATGTCTGAAGGGCTATTCAACTTTGTGATTGGGTGGACATTCATGTTTGCTCCTTTGCTTTTCACTGATGGGAAGAGGGACAGATACAAAGGGTCTCTTGATGTCTTATGGGGCTTTCAGATGTTCCTTACAAATACATTTTTGATACCTTACATGGCTATTCGGCTGAATGCACCTGAATCAGACTGCACTCCCAGCAAGCGCTCACAGCTTGGGGATGTGATGACCAACGGTGCTCCCATTGTCGGACTTGTTGGTGGAGGGATATGTCTGATATCTGCATTATGGGCACTTTATGGCCGAATGGACAGCAATTTCGGTGGCATTTCTGAGCGATGGGAGTTCTTGATCAATTATCTAGGATCCGAGAGGCTGGCTTATGCATTCATTTGGGATATAGTTCTCTATAGCGTCTTTCAGCCTTGGTTGATAGGCGATAATCTTCAAAATGTTAAGAGCGATAAGATTGGTATTGTAAATTACCTTAGATTTGTGCCAGTGATTGGCTTAGTTGCTTACCTTCTTTGTTTGAACCTTGATGAGGAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0030674 GO:0032182 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0060090 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_7 UBA_4 UBX

Protein Analysis

327

Amino Acids

36.83

Weight (kDa)

6.74

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14570 AT1G14570 AT1G14570 AT1G14570
fragaria_vesca	FvH4_4g36080 FvH4_4g36080 FvH4_4g36080 FvH4_4g36080
malus_domestica	MD13G1012500.v1.1 MD16G1009200.v1.1
prunus_persica	Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1
pyrus_communis	pycom13g01000 pycom16g00890
rosa_chinensis	RchiOBHm_Chr4g0445701
rosa_laevigata	RLG00000005715
rosa_multiflora	Rmu_sc0000961.1_g000019 Rmu_sc0002957.1_g000001 Rmu_sc0003637.1_g000013
rosa_roxburghii	Rroxscaffold_5G00386190
rosa_rugosa	Rorug03G0328200 Rorug04G0365000
rosa_samantha	Rh4AG425900 Rh4CG452900 Rh4DG434100
rosa_wichuraiana	Rw4G036480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	935
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	3 cut(s)	48, 167, 172
AciI	CCGC	4 cut(s)	46, 76, 167, 189
AclWI	GGATC	2 cut(s)	789, 802
AcoI	YGGCCR	2 cut(s)	3, 730
AcsI	RAATTY	2 cut(s)	217, 337
AcuI	CTGAAG	2 cut(s)	276, 459
AfeI	AGCGCT	1 cut(s)	635
AfiI	CCNNNNNNNGG	5 cut(s)	111, 313, 677, 935, 973
AgsI	TTSAA	6 cut(s)	145, 361, 388, 451, 878, 964
AhlI	ACTAGT	2 cut(s)	151, 239
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	2 cut(s)	28, 643
AluI	AGCT	2 cut(s)	28, 643
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	5 cut(s)	139, 197, 248, 297, 531
AlwI	GGATC	2 cut(s)	789, 802
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	635
AoxI	GGCC	3 cut(s)	3, 349, 730
ApoI	RAATTY	2 cut(s)	217, 337
ArsI	GACNNNNNNTTYG	2 cut(s)	731, 763
AseI	ATTAAT	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	3 cut(s)	50, 172, 636
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	724
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	670
BbvCI	CCTCAGC	1 cut(s)	24
BccI	CCATC	2 cut(s)	494, 762
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	1 cut(s)	780
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	5 cut(s)	139, 197, 248, 297, 531
BcuI	ACTAGT	2 cut(s)	151, 239
BfaI	CTAG	3 cut(s)	152, 240, 791
BfmI	CTRYAG	2 cut(s)	90, 838
BfoI	RGCGCY	1 cut(s)	637
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	223, 300
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	796
BmrFI	CCNGG	2 cut(s)	223, 300
BmrI	ACTGGG	2 cut(s)	302, 413
BmsI	GCATC	1 cut(s)	403
BmuI	ACTGGG	2 cut(s)	302, 413
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	223
BsaI	GGTCTC	3 cut(s)	139, 297, 531
BsaJI	CCNNGG	1 cut(s)	854
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 313, 677, 935, 973
Bse1I	ACTGG	3 cut(s)	308, 419, 929
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	5 cut(s)	111, 313, 677, 935, 973
BseMII	CTCAG	3 cut(s)	38, 142, 753
BseNI	ACTGG	3 cut(s)	308, 419, 929
BseSI	GKGCMC	1 cut(s)	724
BseYI	CCCAGC	1 cut(s)	626
BsgI	GTGCAG	2 cut(s)	22, 604
Bsh1236I	CGCG	3 cut(s)	48, 167, 172
BshFI	GGCC	3 cut(s)	5, 351, 732
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	200, 223
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	5 cut(s)	111, 313, 677, 935, 973
BsmAI	GTCTC	5 cut(s)	139, 197, 248, 297, 531
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	2 cut(s)	607, 815
BsnI	GGCC	3 cut(s)	5, 351, 732
Bso31I	GGTCTC	3 cut(s)	139, 297, 531
Bsp1286I	GDGCHC	2 cut(s)	670, 724
Bsp143I	GATC	2 cut(s)	780, 794
BspACI	CCGC	4 cut(s)	46, 76, 167, 189
BspANI	GGCC	3 cut(s)	5, 351, 732
BspCNI	CTCAG	3 cut(s)	37, 141, 754
BspFNI	CGCG	3 cut(s)	48, 167, 172
BspLI	GGNNCC	1 cut(s)	796
BspPI	GGATC	2 cut(s)	789, 802
BspTNI	GGTCTC	3 cut(s)	139, 297, 531
BsrI	ACTGG	3 cut(s)	308, 419, 929
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	2 cut(s)	780, 794
BssT1I	CCWWGG	1 cut(s)	854
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	6 cut(s)	10, 123, 231, 334, 665, 981
Bst6I	CTCTTC	2 cut(s)	348, 500
BstC8I	GCNNGC	2 cut(s)	632, 807
BstDEI	CTNAG	5 cut(s)	24, 128, 762, 917, 940
BstENI	CCTNNNNNAGG	1 cut(s)	971
BstF5I	GGATG	1 cut(s)	655
BstFNI	CGCG	3 cut(s)	48, 167, 172
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	3 cut(s)	50, 172, 636
BstKTI	GATC	2 cut(s)	783, 797
BstMAI	GTCTC	5 cut(s)	139, 197, 248, 297, 531
BstMBI	GATC	2 cut(s)	780, 794
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 56, 101, 627, 640, 719
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	221, 298
BstSFI	CTRYAG	2 cut(s)	90, 838
BstSLI	GKGCMC	1 cut(s)	724
BstUI	CGCG	3 cut(s)	48, 167, 172
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
BsuRI	GGCC	3 cut(s)	5, 351, 732
BtgZI	GCGATG	1 cut(s)	781
BtsCI	GGATG	1 cut(s)	655
BtsIMutI	CAGTG	4 cut(s)	315, 339, 495, 936
Cac8I	GCNNGC	2 cut(s)	632, 807
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	3 cut(s)	50, 172, 636
Cfr13I	GGNCC	1 cut(s)	349
CseI	GACGC	2 cut(s)	161, 832
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	2 cut(s)	475, 586
DdeI	CTNAG	5 cut(s)	24, 128, 762, 917, 940
DpnI	GATC	2 cut(s)	782, 796
DpnII	GATC	2 cut(s)	780, 794
EaeI	YGGCCR	2 cut(s)	3, 730
Eam1104I	CTCTTC	2 cut(s)	348, 500
EarI	CTCTTC	2 cut(s)	348, 500
Eco130I	CCWWGG	1 cut(s)	854
Eco31I	GGTCTC	3 cut(s)	139, 297, 531
Eco32I	GATATC	1 cut(s)	708
Eco47III	AGCGCT	1 cut(s)	635
Eco57I	CTGAAG	2 cut(s)	276, 459
EcoNI	CCTNNNNNAGG	1 cut(s)	971
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	854
EcoT22I	ATGCAT	1 cut(s)	817
ErhI	CCWWGG	1 cut(s)	854
FaeI	CATG	2 cut(s)	478, 589
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	2 cut(s)	474, 585
FbaI	TGATCA	1 cut(s)	780
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	662
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	3 cut(s)	152, 240, 791
GlaI	GCGC	3 cut(s)	49, 171, 635
GluI	GCNGC	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	630
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	5, 351, 732
HapII	CCGG	2 cut(s)	200, 223
HgaI	GACGC	2 cut(s)	161, 832
HhaI	GCGC	3 cut(s)	50, 172, 636
Hin1II	CATG	2 cut(s)	478, 589
Hin6I	GCGC	3 cut(s)	48, 170, 634
HinP1I	GCGC	3 cut(s)	48, 170, 634
HinfI	GANTC	2 cut(s)	72, 611
HpaII	CCGG	2 cut(s)	200, 223
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	265, 468
Hpy188III	TCNNGA	2 cut(s)	530, 778
Hpy8I	GTNNAC	2 cut(s)	265, 468
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	434, 962
HpyCH4III	ACNGT	6 cut(s)	10, 123, 231, 334, 665, 981
HpyCH4V	TGCA	5 cut(s)	39, 605, 621, 713, 815
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 56, 101, 627, 640, 719
HpyF3I	CTNAG	5 cut(s)	24, 128, 762, 917, 940
Hsp92II	CATG	2 cut(s)	478, 589
HspAI	GCGC	3 cut(s)	48, 170, 634
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	2 cut(s)	780, 794
LmnI	GCTCC	3 cut(s)	301, 487, 673
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	3 cut(s)	152, 240, 791
MaeIII	GTNAC	2 cut(s)	10, 123
MalI	GATC	2 cut(s)	782, 796
MboI	GATC	2 cut(s)	780, 794
MboII	GAAGA	8 cut(s)	108, 275, 278, 335, 358, 416, 517, 866
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	2 cut(s)	670, 724
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	217, 337, 403, 745, 784, 910
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	155, 220, 658
MnlI	CCTC	7 cut(s)	33, 362, 390, 501, 686, 795, 967
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	817
MroXI	GAANNNNTTC	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	402, 885
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	200, 223
MspR9I	CCNGG	2 cut(s)	223, 300
Mva1269I	GAATGC	2 cut(s)	607, 815
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	3 cut(s)	48, 167, 172
MwoI	GCNNNNNNNGC	6 cut(s)	45, 56, 101, 627, 640, 719
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	2 cut(s)	780, 794
NlaIII	CATG	2 cut(s)	478, 589
NlaIV	GGNNCC	1 cut(s)	796
NmuCI	GTSAC	1 cut(s)	123
NsiI	ATGCAT	1 cut(s)	817
PctI	GAATGC	2 cut(s)	607, 815
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	72, 611
PflMI	CCANNNNNTGG	1 cut(s)	935
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	796
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	794
SaqAI	TTAA	2 cut(s)	402, 885
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	780, 794
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	223, 300
SduI	GDGCHC	2 cut(s)	670, 724
SetI	ASST	8 cut(s)	25, 30, 583, 610, 645, 918, 954, 969
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	2 cut(s)	90, 838
SpeI	ACTAGT	2 cut(s)	151, 239
Sse9I	AATT	6 cut(s)	217, 337, 403, 745, 784, 910
SsiI	CCGC	4 cut(s)	46, 76, 167, 189
SspMI	CTAG	3 cut(s)	152, 240, 791
StyD4I	CCNGG	2 cut(s)	221, 298
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	6 cut(s)	10, 123, 231, 334, 665, 981
TasI	AATT	6 cut(s)	217, 337, 403, 745, 784, 910
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	72, 611
Tru1I	TTAA	2 cut(s)	402, 885
Tru9I	TTAA	2 cut(s)	402, 885
TscAI	CASTG	4 cut(s)	315, 339, 502, 936
TseFI	GTSAC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	3 cut(s)	228, 463, 808
TspRI	CASTG	4 cut(s)	315, 339, 502, 936
Van91I	CCANNNNNTGG	1 cut(s)	935
VspI	ATTAAT	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	971
XapI	RAATTY	2 cut(s)	217, 337
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	3 cut(s)	152, 240, 791
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.