UBX domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14570 AT1G14570 AT1G14570 AT1G14570 |
| fragaria_vesca | FvH4_4g36080 FvH4_4g36080 FvH4_4g36080 FvH4_4g36080 |
| malus_domestica | MD13G1012500.v1.1 MD16G1009200.v1.1 |
| prunus_persica | Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1 Prupe.1G341400_v2.0.a1 |
| pyrus_communis | pycom13g01000 pycom16g00890 |
| rosa_chinensis | RchiOBHm_Chr4g0445701 |
| rosa_laevigata | RLG00000005715 |
| rosa_multiflora | Rmu_sc0000961.1_g000019 Rmu_sc0002957.1_g000001 Rmu_sc0003637.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00386190 |
| rosa_rugosa | Rorug03G0328200 Rorug04G0365000 |
| rosa_samantha | Rh4AG425900 Rh4CG452900 Rh4DG434100 |
| rosa_wichuraiana | Rw4G036480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 452 |
| AccB1I | GGYRCC | 1 cut(s) | 316 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 249 |
| AccBSI | CCGCTC | 1 cut(s) | 481 |
| AccII | CGCG | 4 cut(s) | 226, 435, 1116, 1332 |
| AciI | CCGC | 6 cut(s) | 213, 226, 314, 479, 1318, 1330 |
| AclWI | GGATC | 4 cut(s) | 963, 978, 1011, 1331 |
| AcoI | YGGCCR | 4 cut(s) | 205, 306, 348, 1479 |
| AcuI | CTGAAG | 2 cut(s) | 864, 1056 |
| AcyI | GRCGYC | 1 cut(s) | 317 |
| AdeI | CACNNNGTG | 2 cut(s) | 83, 249 |
| AfaI | GTAC | 1 cut(s) | 384 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 249, 485, 914, 1378 |
| AgsI | TTSAA | 5 cut(s) | 59, 614, 674, 1431, 1466 |
| AjnI | CCWGG | 6 cut(s) | 562, 660, 699, 770, 998, 1420 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 713, 745 |
| Alw21I | GWGCWC | 2 cut(s) | 493, 897 |
| Alw26I | GTCTC | 5 cut(s) | 184, 759, 793, 1142, 1498 |
| AlwI | GGATC | 4 cut(s) | 963, 978, 1011, 1331 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 175, 235 |
| Ama87I | CYCGRG | 1 cut(s) | 1033 |
| ApaI | GGGCCC | 1 cut(s) | 127 |
| ApeKI | GCWGC | 3 cut(s) | 689, 1111, 1124 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 267 |
| AspLEI | GCGC | 6 cut(s) | 226, 319, 435, 437, 1116, 1118 |
| AspS9I | GGNCC | 7 cut(s) | 104, 123, 124, 580, 774, 995, 1312 |
| AsuC2I | CCSGG | 1 cut(s) | 953 |
| AsuHPI | GGTGA | 3 cut(s) | 730, 941, 1271 |
| AvaI | CYCGRG | 1 cut(s) | 1033 |
| AvaII | GGWCC | 2 cut(s) | 580, 1312 |
| BaeGI | GKGCMC | 1 cut(s) | 127 |
| BalI | TGGCCA | 1 cut(s) | 1481 |
| BanI | GGYRCC | 1 cut(s) | 316 |
| BanII | GRGCYC | 1 cut(s) | 127 |
| BbsI | GAAGAC | 1 cut(s) | 1286 |
| Bbv12I | GWGCWC | 2 cut(s) | 493, 897 |
| BbvCI | CCTCAGC | 2 cut(s) | 598, 1386 |
| BbvI | GCAGC | 3 cut(s) | 676, 1123, 1136 |
| BccI | CCATC | 4 cut(s) | 87, 115, 133, 1295 |
| BceAI | ACGGC | 3 cut(s) | 185, 237, 304 |
| BciT130I | CCWGG | 6 cut(s) | 564, 662, 701, 772, 1000, 1422 |
| BclI | TGATCA | 1 cut(s) | 340 |
| BcnI | CCSGG | 1 cut(s) | 953 |
| BcoDI | GTCTC | 5 cut(s) | 184, 759, 793, 1142, 1498 |
| BfaI | CTAG | 2 cut(s) | 501, 1209 |
| BfmI | CTRYAG | 2 cut(s) | 236, 888 |
| BfoI | RGCGCY | 1 cut(s) | 320 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 221, 314 |
| BisI | GCNGC | 6 cut(s) | 227, 315, 479, 690, 1112, 1125 |
| BlpI | GCTNAGC | 1 cut(s) | 1047 |
| BlsI | GCNGC | 6 cut(s) | 228, 316, 480, 691, 1113, 1126 |
| Bme1390I | CCNGG | 7 cut(s) | 564, 662, 701, 772, 953, 1000, 1422 |
| Bme18I | GGWCC | 2 cut(s) | 580, 1312 |
| BmeT110I | CYCGRG | 1 cut(s) | 1033 |
| BmgT120I | GGNCC | 7 cut(s) | 104, 123, 124, 580, 774, 995, 1312 |
| BmiI | GGNNCC | 6 cut(s) | 125, 318, 667, 997, 1268, 1313 |
| BmrFI | CCNGG | 7 cut(s) | 564, 662, 701, 772, 953, 1000, 1422 |
| BmrI | ACTGGG | 1 cut(s) | 255 |
| BmsI | GCATC | 4 cut(s) | 568, 635, 1057, 1212 |
| BmuI | ACTGGG | 1 cut(s) | 255 |
| BoxI | GACNNNNGTC | 1 cut(s) | 176 |
| BpiI | GAAGAC | 1 cut(s) | 1286 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 731, 763 |
| BpmI | CTGGAG | 1 cut(s) | 986 |
| Bpu10I | CCTNAGC | 2 cut(s) | 598, 1386 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1047 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| BpuMI | CCSGG | 1 cut(s) | 953 |
| BsaHI | GRCGYC | 1 cut(s) | 317 |
| BsaI | GGTCTC | 2 cut(s) | 184, 1498 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1219, 1249 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 249, 485, 914, 1378 |
| Bse1I | ACTGG | 3 cut(s) | 250, 720, 919 |
| BseBI | CCWGG | 6 cut(s) | 564, 662, 701, 772, 1000, 1422 |
| BseGI | GGATG | 5 cut(s) | 107, 559, 593, 626, 1163 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 249, 485, 914, 1378 |
| BseMII | CTCAG | 3 cut(s) | 612, 1061, 1377 |
| BseNI | ACTGG | 3 cut(s) | 250, 720, 919 |
| BsePI | GCGCGC | 2 cut(s) | 433, 1114 |
| BseRI | GAGGAG | 1 cut(s) | 560 |
| BseSI | GKGCMC | 1 cut(s) | 127 |
| BseXI | GCAGC | 3 cut(s) | 676, 1123, 1136 |
| BseYI | CCCAGC | 1 cut(s) | 296 |
| BsgI | GTGCAG | 1 cut(s) | 1130 |
| Bsh1236I | CGCG | 4 cut(s) | 226, 435, 1116, 1332 |
| BshNI | GGYRCC | 1 cut(s) | 316 |
| BsiHKAI | GWGCWC | 2 cut(s) | 493, 897 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1033 |
| BsiSI | CCGG | 1 cut(s) | 953 |
| BslFI | GGGAC | 1 cut(s) | 470 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 249, 485, 914, 1378 |
| BsmAI | GTCTC | 5 cut(s) | 184, 759, 793, 1142, 1498 |
| BsmFI | GGGAC | 1 cut(s) | 470 |
| Bso31I | GGTCTC | 2 cut(s) | 184, 1498 |
| BsoBI | CYCGRG | 1 cut(s) | 1033 |
| Bsp120I | GGGCCC | 1 cut(s) | 123 |
| Bsp1286I | GDGCHC | 3 cut(s) | 127, 493, 897 |
| Bsp143I | GATC | 6 cut(s) | 195, 340, 955, 970, 1003, 1336 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1047 |
| Bsp19I | CCATGG | 1 cut(s) | 1131 |
| BspACI | CCGC | 6 cut(s) | 213, 226, 314, 479, 1318, 1330 |
| BspCNI | CTCAG | 3 cut(s) | 611, 1060, 1378 |
| BspFNI | CGCG | 4 cut(s) | 226, 435, 1116, 1332 |
| BspLI | GGNNCC | 6 cut(s) | 125, 318, 667, 997, 1268, 1313 |
| BspMAI | CTGCAG | 1 cut(s) | 240 |
| BspPI | GGATC | 4 cut(s) | 963, 978, 1011, 1331 |
| BspT107I | GGYRCC | 1 cut(s) | 316 |
| BspTNI | GGTCTC | 2 cut(s) | 184, 1498 |
| BsrBI | CCGCTC | 1 cut(s) | 481 |
| BsrI | ACTGG | 3 cut(s) | 250, 720, 919 |
| BssHII | GCGCGC | 2 cut(s) | 433, 1114 |
| BssMI | GATC | 6 cut(s) | 195, 340, 955, 970, 1003, 1336 |
| BssNI | GRCGYC | 1 cut(s) | 317 |
| BssT1I | CCWWGG | 4 cut(s) | 494, 583, 1131, 1254 |
| Bst2UI | CCWGG | 6 cut(s) | 564, 662, 701, 772, 1000, 1422 |
| Bst4CI | ACNGT | 2 cut(s) | 83, 657 |
| Bst6I | CTCTTC | 3 cut(s) | 17, 187, 986 |
| BstACI | GRCGYC | 1 cut(s) | 317 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 235, 686 |
| BstC8I | GCNNGC | 5 cut(s) | 240, 435, 749, 1116, 1413 |
| BstDEI | CTNAG | 3 cut(s) | 598, 1047, 1386 |
| BstDSI | CCRYGG | 1 cut(s) | 1131 |
| BstF5I | GGATG | 5 cut(s) | 107, 559, 593, 626, 1163 |
| BstFNI | CGCG | 4 cut(s) | 226, 435, 1116, 1332 |
| BstH2I | RGCGCY | 1 cut(s) | 320 |
| BstHHI | GCGC | 6 cut(s) | 226, 319, 435, 437, 1116, 1118 |
| BstKTI | GATC | 6 cut(s) | 198, 343, 958, 973, 1006, 1339 |
| BstMAI | GTCTC | 5 cut(s) | 184, 759, 793, 1142, 1498 |
| BstMBI | GATC | 6 cut(s) | 195, 340, 955, 970, 1003, 1336 |
| BstNI | CCWGG | 6 cut(s) | 564, 662, 701, 772, 1000, 1422 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 176 |
| BstSCI | CCNGG | 7 cut(s) | 562, 660, 699, 770, 951, 998, 1420 |
| BstSFI | CTRYAG | 2 cut(s) | 236, 888 |
| BstSLI | GKGCMC | 1 cut(s) | 127 |
| BstUI | CGCG | 4 cut(s) | 226, 435, 1116, 1332 |
| BstV1I | GCAGC | 3 cut(s) | 676, 1123, 1136 |
| BstV2I | GAAGAC | 1 cut(s) | 1286 |
| BstX2I | RGATCY | 1 cut(s) | 970 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1489 |
| BstYI | RGATCY | 1 cut(s) | 970 |
| BtgI | CCRYGG | 1 cut(s) | 1131 |
| BtsCI | GGATG | 5 cut(s) | 107, 559, 593, 626, 1163 |
| BtsIMutI | CAGTG | 2 cut(s) | 88, 243 |
| Cac8I | GCNNGC | 5 cut(s) | 240, 435, 749, 1116, 1413 |
| CaiI | CAGNNNCTG | 2 cut(s) | 175, 235 |
| CfoI | GCGC | 6 cut(s) | 226, 319, 435, 437, 1116, 1118 |
| Cfr13I | GGNCC | 7 cut(s) | 104, 123, 124, 580, 774, 995, 1312 |
| CseI | GACGC | 1 cut(s) | 1417 |
| Csp6I | GTAC | 1 cut(s) | 383 |
| CviAII | CATG | 5 cut(s) | 515, 933, 1010, 1132, 1141 |
| CviQI | GTAC | 1 cut(s) | 383 |
| DdeI | CTNAG | 3 cut(s) | 598, 1047, 1386 |
| DinI | GGCGCC | 1 cut(s) | 318 |
| DpnI | GATC | 6 cut(s) | 197, 342, 957, 972, 1005, 1338 |
| DpnII | GATC | 6 cut(s) | 195, 340, 955, 970, 1003, 1336 |
| DraIII | CACNNNGTG | 2 cut(s) | 83, 249 |
| EaeI | YGGCCR | 4 cut(s) | 205, 306, 348, 1479 |
| Eam1104I | CTCTTC | 3 cut(s) | 17, 187, 986 |
| EarI | CTCTTC | 3 cut(s) | 17, 187, 986 |
| Eco130I | CCWWGG | 4 cut(s) | 494, 583, 1131, 1254 |
| Eco24I | GRGCYC | 1 cut(s) | 127 |
| Eco31I | GGTCTC | 2 cut(s) | 184, 1498 |
| Eco47I | GGWCC | 2 cut(s) | 580, 1312 |
| Eco57I | CTGAAG | 2 cut(s) | 864, 1056 |
| Eco88I | CYCGRG | 1 cut(s) | 1033 |
| EcoO109I | RGGNCCY | 1 cut(s) | 124 |
| EcoRII | CCWGG | 6 cut(s) | 562, 660, 699, 770, 998, 1420 |
| EcoT14I | CCWWGG | 4 cut(s) | 494, 583, 1131, 1254 |
| EcoT38I | GRGCYC | 1 cut(s) | 127 |
| EgeI | GGCGCC | 1 cut(s) | 318 |
| EheI | GGCGCC | 1 cut(s) | 318 |
| ErhI | CCWWGG | 4 cut(s) | 494, 583, 1131, 1254 |
| FaeI | CATG | 5 cut(s) | 518, 936, 1013, 1135, 1144 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 606, 638, 676, 708 |
| FaqI | GGGAC | 1 cut(s) | 470 |
| FatI | CATG | 5 cut(s) | 514, 932, 1009, 1131, 1140 |
| FauNDI | CATATG | 3 cut(s) | 119, 753, 829 |
| FbaI | TGATCA | 1 cut(s) | 340 |
| Fnu4HI | GCNGC | 6 cut(s) | 227, 315, 479, 690, 1112, 1125 |
| FokI | GGATG | 5 cut(s) | 94, 546, 580, 613, 1150 |
| FriOI | GRGCYC | 1 cut(s) | 127 |
| Fsp4HI | GCNGC | 6 cut(s) | 227, 315, 479, 690, 1112, 1125 |
| FspBI | CTAG | 2 cut(s) | 501, 1209 |
| GlaI | GCGC | 6 cut(s) | 225, 318, 434, 436, 1115, 1117 |
| GluI | GCNGC | 6 cut(s) | 227, 315, 479, 690, 1112, 1125 |
| GsaI | CCCAGC | 1 cut(s) | 300 |
| GsuI | CTGGAG | 1 cut(s) | 986 |
| HaeII | RGCGCY | 1 cut(s) | 320 |
| HapII | CCGG | 1 cut(s) | 953 |
| HgaI | GACGC | 1 cut(s) | 1417 |
| HhaI | GCGC | 6 cut(s) | 226, 319, 435, 437, 1116, 1118 |
| Hin1I | GRCGYC | 1 cut(s) | 317 |
| Hin1II | CATG | 5 cut(s) | 518, 936, 1013, 1135, 1144 |
| Hin6I | GCGC | 6 cut(s) | 224, 317, 433, 435, 1114, 1116 |
| HinP1I | GCGC | 6 cut(s) | 224, 317, 433, 435, 1114, 1116 |
| HindIII | AAGCTT | 2 cut(s) | 254, 357 |
| HinfI | GANTC | 6 cut(s) | 172, 575, 878, 1287, 1435, 1469 |
| HpaII | CCGG | 1 cut(s) | 953 |
| HphI | GGTGA | 3 cut(s) | 730, 941, 1271 |
| Hpy166II | GTNNAC | 2 cut(s) | 721, 949 |
| Hpy188I | TCNGA | 2 cut(s) | 580, 1192 |
| Hpy188III | TCNNGA | 6 cut(s) | 132, 614, 764, 1219, 1298, 1439 |
| Hpy8I | GTNNAC | 2 cut(s) | 721, 949 |
| Hpy99I | CGWCG | 1 cut(s) | 206 |
| HpyAV | CCTTC | 6 cut(s) | 541, 839, 847, 1130, 1138, 1189 |
| HpyCH4III | ACNGT | 2 cut(s) | 83, 657 |
| HpyCH4IV | ACGT | 1 cut(s) | 459 |
| HpyCH4V | TGCA | 7 cut(s) | 238, 626, 727, 861, 1079, 1111, 1278 |
| HpyF3I | CTNAG | 3 cut(s) | 598, 1047, 1386 |
| HpySE526I | ACGT | 1 cut(s) | 459 |
| Hsp92I | GRCGYC | 1 cut(s) | 317 |
| Hsp92II | CATG | 5 cut(s) | 518, 936, 1013, 1135, 1144 |
| HspAI | GCGC | 6 cut(s) | 224, 317, 433, 435, 1114, 1116 |
| KasI | GGCGCC | 1 cut(s) | 316 |
| Ksp22I | TGATCA | 1 cut(s) | 340 |
| Kzo9I | GATC | 6 cut(s) | 195, 340, 955, 970, 1003, 1336 |
| LmnI | GCTCC | 5 cut(s) | 442, 488, 900, 1266, 1424 |
| Lsp1109I | GCAGC | 3 cut(s) | 676, 1123, 1136 |
| LweI | GCATC | 4 cut(s) | 568, 635, 1057, 1212 |
| MaeI | CTAG | 2 cut(s) | 501, 1209 |
| MaeII | ACGT | 1 cut(s) | 459 |
| MaeIII | GTNAC | 5 cut(s) | 321, 536, 1012, 1259, 1498 |
| MalI | GATC | 6 cut(s) | 197, 342, 957, 972, 1005, 1338 |
| MbiI | CCGCTC | 1 cut(s) | 481 |
| MboI | GATC | 6 cut(s) | 195, 340, 955, 970, 1003, 1336 |
| MflI | RGATCY | 1 cut(s) | 970 |
| MhlI | GDGCHC | 3 cut(s) | 127, 493, 897 |
| MlsI | TGGCCA | 1 cut(s) | 1481 |
| MluCI | AATT | 7 cut(s) | 267, 336, 413, 525, 808, 1341, 1483 |
| MluNI | TGGCCA | 1 cut(s) | 1481 |
| Mly113I | GGCGCC | 1 cut(s) | 317 |
| MlyI | GAGTC | 2 cut(s) | 166, 1296 |
| MmeI | TCCRAC | 2 cut(s) | 855, 1264 |
| Mox20I | TGGCCA | 1 cut(s) | 1481 |
| MroXI | GAANNNNTTC | 1 cut(s) | 267 |
| MscI | TGGCCA | 1 cut(s) | 1481 |
| MseI | TTAA | 2 cut(s) | 648, 759 |
| Msp20I | TGGCCA | 1 cut(s) | 1481 |
| MspA1I | CMGCKG | 2 cut(s) | 1318, 1348 |
| MspI | CCGG | 1 cut(s) | 953 |
| MspR9I | CCNGG | 7 cut(s) | 564, 662, 701, 772, 953, 1000, 1422 |
| MvaI | CCWGG | 6 cut(s) | 564, 662, 701, 772, 1000, 1422 |
| MvnI | CGCG | 4 cut(s) | 226, 435, 1116, 1332 |
| NarI | GGCGCC | 1 cut(s) | 317 |
| NciI | CCSGG | 1 cut(s) | 953 |
| NcoI | CCATGG | 1 cut(s) | 1131 |
| NdeI | CATATG | 3 cut(s) | 119, 753, 829 |
| NdeII | GATC | 6 cut(s) | 195, 340, 955, 970, 1003, 1336 |
| NlaIII | CATG | 5 cut(s) | 518, 936, 1013, 1135, 1144 |
| NlaIV | GGNNCC | 6 cut(s) | 125, 318, 667, 997, 1268, 1313 |
| NmeAIII | GCCGAG | 1 cut(s) | 334 |
| NmuCI | GTSAC | 1 cut(s) | 1259 |
| PasI | CCCWGGG | 1 cut(s) | 999 |
| PauI | GCGCGC | 2 cut(s) | 433, 1114 |
| PdmI | GAANNNNTTC | 1 cut(s) | 267 |
| PfeI | GAWTC | 4 cut(s) | 575, 878, 1435, 1469 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 249 |
| PfoI | TCCNGGA | 1 cut(s) | 699 |
| PkrI | GCNGC | 6 cut(s) | 228, 316, 480, 691, 1113, 1126 |
| PleI | GAGTC | 2 cut(s) | 166, 1295 |
| PluTI | GGCGCC | 1 cut(s) | 320 |
| PpsI | GAGTC | 2 cut(s) | 166, 1295 |
| PshAI | GACNNNNGTC | 1 cut(s) | 176 |
| PsiI | TTATAA | 1 cut(s) | 452 |
| Psp6I | CCWGG | 6 cut(s) | 562, 660, 699, 770, 998, 1420 |
| PspFI | CCCAGC | 1 cut(s) | 296 |
| PspGI | CCWGG | 6 cut(s) | 562, 660, 699, 770, 998, 1420 |
| PspN4I | GGNNCC | 6 cut(s) | 125, 318, 667, 997, 1268, 1313 |
| PspOMI | GGGCCC | 1 cut(s) | 123 |
| PspPI | GGNCC | 7 cut(s) | 104, 123, 124, 580, 774, 995, 1312 |
| PstI | CTGCAG | 1 cut(s) | 240 |
| PstNI | CAGNNNCTG | 2 cut(s) | 175, 235 |
| PsuI | RGATCY | 1 cut(s) | 970 |
| PteI | GCGCGC | 2 cut(s) | 433, 1114 |
| PvuII | CAGCTG | 1 cut(s) | 1348 |
| RsaI | GTAC | 1 cut(s) | 384 |
| RsaNI | GTAC | 1 cut(s) | 383 |
| SaqAI | TTAA | 2 cut(s) | 648, 759 |
| SatI | GCNGC | 6 cut(s) | 227, 315, 479, 690, 1112, 1125 |
| Sau3AI | GATC | 6 cut(s) | 195, 340, 955, 970, 1003, 1336 |
| Sau96I | GGNCC | 7 cut(s) | 104, 123, 124, 580, 774, 995, 1312 |
| SchI | GAGTC | 2 cut(s) | 166, 1296 |
| ScrFI | CCNGG | 7 cut(s) | 564, 662, 701, 772, 953, 1000, 1422 |
| SduI | GDGCHC | 3 cut(s) | 127, 493, 897 |
| SfaNI | GCATC | 4 cut(s) | 568, 635, 1057, 1212 |
| SfcI | CTRYAG | 2 cut(s) | 236, 888 |
| SfoI | GGCGCC | 1 cut(s) | 318 |
| SinI | GGWCC | 2 cut(s) | 580, 1312 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| Sse9I | AATT | 7 cut(s) | 267, 336, 413, 525, 808, 1341, 1483 |
| SsiI | CCGC | 6 cut(s) | 213, 226, 314, 479, 1318, 1330 |
| SspDI | GGCGCC | 1 cut(s) | 316 |
| SspMI | CTAG | 2 cut(s) | 501, 1209 |
| StyD4I | CCNGG | 7 cut(s) | 562, 660, 699, 770, 951, 998, 1420 |
| StyI | CCWWGG | 4 cut(s) | 494, 583, 1131, 1254 |
| TaaI | ACNGT | 2 cut(s) | 83, 657 |
| TaiI | ACGT | 1 cut(s) | 462 |
| TaqI | TCGA | 1 cut(s) | 763 |
| TasI | AATT | 7 cut(s) | 267, 336, 413, 525, 808, 1341, 1483 |
| TauI | GCSGC | 3 cut(s) | 229, 317, 481 |
| TfiI | GAWTC | 4 cut(s) | 575, 878, 1435, 1469 |
| Tru1I | TTAA | 2 cut(s) | 648, 759 |
| Tru9I | TTAA | 2 cut(s) | 648, 759 |
| TscAI | CASTG | 2 cut(s) | 88, 250 |
| TseFI | GTSAC | 1 cut(s) | 1259 |
| TseI | GCWGC | 3 cut(s) | 689, 1111, 1124 |
| Tsp45I | GTSAC | 1 cut(s) | 1259 |
| TspDTI | ATGAA | 8 cut(s) | 106, 306, 387, 569, 921, 1107, 1157, 1194 |
| TspGWI | ACGGA | 2 cut(s) | 524, 1280 |
| TspRI | CASTG | 2 cut(s) | 88, 250 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 249 |
| VpaK11BI | GGWCC | 2 cut(s) | 580, 1312 |
| XmnI | GAANNNNTTC | 1 cut(s) | 267 |
| XspI | CTAG | 2 cut(s) | 501, 1209 |